Wall clock time and date at job start Wed Apr 1 2020 04:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00233 * 2 1 4 4 H 1.48499 * 109.47447 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47353 * 300.00435 * 3 2 1 6 6 H 1.48505 * 109.47110 * 60.00314 * 3 2 1 7 7 C 1.38719 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00120 * 179.97438 * 7 2 1 9 9 O 1.34786 * 120.00264 * 359.97438 * 7 2 1 10 10 C 1.35569 * 117.00334 * 174.94117 * 9 7 2 11 11 C 1.39172 * 119.89570 * 5.58577 * 10 9 7 12 12 C 1.37597 * 120.10057 * 180.02562 * 11 10 9 13 13 C 1.40030 * 119.89532 * 0.02562 * 12 11 10 14 14 C 1.46962 * 120.09778 * 179.97438 * 13 12 11 15 15 C 1.35026 * 119.99883 * 179.97438 * 14 13 12 16 16 C 1.46247 * 119.99938 * 179.97438 * 15 14 13 17 17 O 1.21722 * 120.00495 * 0.02562 * 16 15 14 18 18 N 1.34778 * 119.99975 * 180.02562 * 16 15 14 19 19 C 1.46498 * 120.00220 * 180.02562 * 18 16 15 20 20 C 1.52995 * 109.47340 * 180.02562 * 19 18 16 21 21 H 1.09003 * 109.47187 * 60.00367 * 20 19 18 22 22 O 1.42903 * 109.47424 * 300.00314 * 20 19 18 23 23 C 1.53003 * 109.47492 * 179.97438 * 20 19 18 24 24 H 1.09001 * 110.56230 * 57.39720 * 23 20 19 25 25 C 1.54504 * 110.51193 * 294.72165 * 23 20 19 26 26 C 1.54478 * 104.06248 * 241.35263 * 25 23 20 27 27 O 1.44429 * 104.90071 * 335.96208 * 26 25 23 28 28 C 1.44696 * 105.13318 * 40.50190 * 27 26 25 29 29 C 1.40023 * 119.79751 * 0.24977 * 13 12 11 30 30 C 1.37594 * 119.89753 * 359.46903 * 29 13 12 31 31 H 0.97004 * 119.99850 * 359.97438 * 1 2 3 32 32 H 1.07996 * 119.95488 * 359.97438 * 11 10 9 33 33 H 1.07997 * 120.05741 * 180.02562 * 12 11 10 34 34 H 1.08004 * 120.00304 * 359.97438 * 14 13 12 35 35 H 1.08004 * 119.99812 * 0.02562 * 15 14 13 36 36 H 0.97005 * 119.99917 * 0.02562 * 18 16 15 37 37 H 1.09000 * 109.47414 * 60.00269 * 19 18 16 38 38 H 1.09000 * 109.47222 * 300.00017 * 19 18 16 39 39 H 0.96702 * 113.99532 * 304.98969 * 22 20 19 40 40 H 1.09000 * 110.51079 * 122.70981 * 25 23 20 41 41 H 1.08998 * 110.63118 * 0.04933 * 25 23 20 42 42 H 1.08994 * 110.37883 * 94.85364 * 26 25 23 43 43 H 1.09000 * 110.37368 * 217.07992 * 26 25 23 44 44 H 1.09002 * 110.35010 * 200.67718 * 28 27 26 45 45 H 1.08991 * 110.45169 * 78.40682 * 28 27 26 46 46 H 1.07999 * 120.04742 * 179.74465 * 29 13 12 47 47 H 1.07997 * 119.94631 * 180.29524 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0087 -1.2014 -0.0005 8 1 3.0887 -1.2014 -0.0010 9 8 1.3348 -2.3687 -0.0005 10 6 2.0690 -3.5033 -0.1076 11 6 3.4589 -3.4340 -0.0937 12 6 4.2083 -4.5829 -0.2026 13 6 3.5702 -5.8230 -0.3281 14 6 4.3662 -7.0528 -0.4452 15 6 3.7489 -8.2477 -0.5656 16 6 4.5410 -9.4715 -0.6828 17 8 5.7567 -9.4131 -0.6713 18 7 3.9248 -10.6641 -0.8035 19 6 4.7182 -11.8900 -0.9203 20 6 3.7819 -13.0936 -1.0443 21 1 3.1580 -12.9788 -1.9307 22 8 2.9512 -13.1726 0.1158 23 6 4.6105 -14.3740 -1.1669 24 1 5.2757 -14.4830 -0.3104 25 6 5.4191 -14.3716 -2.4835 26 6 4.8889 -15.6023 -3.2519 27 8 4.3624 -16.4787 -2.2317 28 6 3.6873 -15.6059 -1.2956 29 6 2.1716 -5.8872 -0.3474 30 6 1.4305 -4.7336 -0.2321 31 1 -0.4850 0.8401 0.0004 32 1 3.9502 -2.4770 0.0019 33 1 5.2868 -4.5283 -0.1913 34 1 5.4450 -7.0010 -0.4351 35 1 2.6701 -8.2995 -0.5762 36 1 2.9559 -10.7106 -0.8130 37 1 5.3424 -12.0047 -0.0341 38 1 5.3514 -11.8301 -1.8055 39 1 3.4410 -13.1990 0.9492 40 1 6.4840 -14.4794 -2.2778 41 1 5.2306 -13.4585 -3.0482 42 1 4.0993 -15.3071 -3.9429 43 1 5.7002 -16.0917 -3.7908 44 1 3.5761 -16.0992 -0.3300 45 1 2.7129 -15.3109 -1.6847 46 1 1.6753 -6.8411 -0.4481 47 1 0.3517 -4.7827 -0.2420 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492138179.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:29 Heat of formation + Delta-G solvation = -125.697918 kcal Electronic energy + Delta-G solvation = -28219.891873 eV Core-core repulsion = 23947.468577 eV Total energy + Delta-G solvation = -4272.423296 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.43942 -39.53134 -39.13354 -37.69527 -36.89306 -34.46460 -33.25575 -33.08517 -32.30998 -30.45251 -29.89612 -29.00665 -27.71033 -25.69714 -24.05912 -23.32144 -22.65370 -22.11820 -21.22158 -20.66907 -19.39119 -18.23194 -17.63235 -17.28227 -17.15968 -17.01226 -16.16520 -15.70574 -15.57955 -15.44963 -14.95493 -14.78431 -14.62739 -14.44398 -14.27548 -13.89386 -13.82511 -13.49457 -13.37275 -13.05866 -13.02337 -12.61064 -12.41124 -12.11190 -11.96256 -11.86357 -11.78284 -11.73629 -11.68003 -11.16113 -11.13872 -11.08704 -10.68747 -10.57359 -10.53920 -10.29480 -9.84402 -9.63698 -9.51525 -9.23410 -8.87377 -8.40217 -7.13634 -6.67046 -4.21809 1.03793 2.11752 2.52524 3.01716 3.02211 3.03569 3.09297 3.44952 3.53352 3.70635 3.80643 3.99187 4.15548 4.27428 4.42576 4.49011 4.63058 4.65880 4.77410 4.85531 4.90399 4.97489 5.02884 5.15992 5.22284 5.25096 5.26036 5.32687 5.38444 5.45249 5.51471 5.60530 5.62262 5.64938 5.99473 6.09714 6.23933 6.27194 6.44001 6.45827 6.58880 6.77096 6.90225 7.03652 7.11157 7.21656 7.26067 7.48735 7.61991 7.78424 8.27661 8.77857 9.44693 10.49602 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.035012 B = 0.001367 C = 0.001341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.533913 B =20472.330319 C =20880.789691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.042 3.958 3 Si 0.945 3.055 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.393 4.393 8 H 0.098 0.902 9 O -0.162 6.162 10 C 0.167 3.833 11 C -0.242 4.242 12 C -0.035 4.035 13 C -0.200 4.200 14 C 0.040 3.960 15 C -0.284 4.284 16 C 0.556 3.444 17 O -0.561 6.561 18 N -0.730 5.730 19 C 0.088 3.912 20 C 0.105 3.895 21 H 0.108 0.892 22 O -0.555 6.555 23 C -0.151 4.151 24 H 0.090 0.910 25 C -0.153 4.153 26 C 0.043 3.957 27 O -0.378 6.378 28 C 0.057 3.943 29 C -0.042 4.042 30 C -0.199 4.199 31 H 0.274 0.726 32 H 0.131 0.869 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.405 0.595 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.379 0.621 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.061 0.939 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.066 0.934 46 H 0.118 0.882 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.580 -25.501 -2.995 26.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.165 4.165 3 Si 0.769 3.231 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.469 4.469 8 H 0.115 0.885 9 O -0.063 6.063 10 C 0.110 3.890 11 C -0.261 4.261 12 C -0.053 4.053 13 C -0.201 4.201 14 C 0.020 3.980 15 C -0.305 4.305 16 C 0.348 3.652 17 O -0.442 6.442 18 N -0.382 5.382 19 C -0.036 4.036 20 C 0.046 3.954 21 H 0.126 0.874 22 O -0.360 6.360 23 C -0.171 4.171 24 H 0.109 0.891 25 C -0.191 4.191 26 C -0.034 4.034 27 O -0.296 6.296 28 C -0.020 4.020 29 C -0.061 4.061 30 C -0.219 4.219 31 H 0.084 0.916 32 H 0.149 0.851 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.240 0.760 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.227 0.773 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.079 0.921 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.084 0.916 46 H 0.136 0.864 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.525 -25.447 -3.401 26.753 hybrid contribution 0.480 1.040 0.370 1.204 sum 8.004 -24.407 -3.031 25.864 Atomic orbital electron populations 1.70024 1.06147 1.28173 1.44043 1.25399 0.95904 0.99157 0.96000 0.85579 0.79235 0.79802 0.78474 1.18855 1.19903 1.19905 1.21533 0.92142 0.80544 1.52641 0.88468 1.83903 1.35005 1.11818 1.75596 1.19616 0.90330 0.87883 0.91122 1.21100 0.93640 0.99144 1.12262 1.20990 0.98583 0.91388 0.94336 1.18461 0.92987 0.92307 1.16359 1.22288 0.99164 0.91020 0.85522 1.22409 0.99776 0.91799 1.16546 1.18439 0.87625 0.83822 0.75304 1.90776 1.14316 1.87416 1.51668 1.45734 1.10454 1.05671 1.76380 1.22005 0.94359 0.84213 1.03038 1.22215 0.91726 0.91511 0.89989 0.87448 1.86608 1.36627 1.96569 1.16218 1.23199 0.98006 0.96043 0.99842 0.89144 1.23026 1.01022 0.99556 0.95462 1.23433 0.98331 0.90336 0.91264 1.89203 1.73051 1.30462 1.36922 1.23406 0.95060 0.89377 0.94121 1.20884 0.92644 0.96908 0.95639 1.20150 0.99788 0.90175 1.11742 0.91631 0.85107 0.86819 0.85975 0.85833 0.76032 0.91280 0.90577 0.77266 0.90040 0.89842 0.92091 0.88961 0.88855 0.91585 0.86389 0.86108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.68 13.67 55.48 0.76 -22.92 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 3 Si 0.95 19.40 29.55 -169.99 -5.02 14.38 16 4 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.39 -10.38 9.48 30.91 0.29 -10.09 16 8 H 0.10 2.36 5.18 -52.49 -0.27 2.09 16 9 O -0.16 -4.38 9.74 0.73 0.01 -4.38 16 10 C 0.17 3.81 6.66 -38.89 -0.26 3.55 16 11 C -0.24 -4.97 9.14 -39.47 -0.36 -5.33 16 12 C -0.03 -0.61 9.78 -39.14 -0.38 -0.99 16 13 C -0.20 -3.37 5.87 -105.02 -0.62 -3.98 16 14 C 0.04 0.60 9.45 -37.19 -0.35 0.24 16 15 C -0.28 -3.78 9.41 -37.51 -0.35 -4.13 16 16 C 0.56 7.44 7.74 -13.04 -0.10 7.34 16 17 O -0.56 -9.44 16.23 5.17 0.08 -9.36 16 18 N -0.73 -6.90 5.44 -61.76 -0.34 -7.24 16 19 C 0.09 0.67 5.11 -4.05 -0.02 0.64 16 20 C 0.11 0.56 2.33 -26.73 -0.06 0.50 16 21 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 22 O -0.55 -3.25 12.78 -35.23 -0.45 -3.70 16 23 C -0.15 -0.76 2.90 -89.05 -0.26 -1.01 16 24 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 25 C -0.15 -0.75 6.22 -25.17 -0.16 -0.91 16 26 C 0.04 0.25 7.62 37.93 0.29 0.54 16 27 O -0.38 -3.13 11.67 -35.23 -0.41 -3.54 16 28 C 0.06 0.35 6.89 37.93 0.26 0.61 16 29 C -0.04 -0.72 9.40 -39.15 -0.37 -1.08 16 30 C -0.20 -3.95 9.97 -39.47 -0.39 -4.34 16 31 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.13 2.66 5.62 -52.49 -0.29 2.37 16 33 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.12 1.81 7.52 -52.48 -0.39 1.42 16 35 H 0.12 1.42 6.07 -52.48 -0.32 1.10 16 36 H 0.40 3.15 8.33 -40.82 -0.34 2.81 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.62 6.86 -51.93 -0.36 0.26 16 39 H 0.38 1.28 9.03 45.56 0.41 1.69 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.37 6.81 -51.93 -0.35 0.02 16 42 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.41 7.87 -51.93 -0.41 0.00 16 46 H 0.12 1.62 6.16 -52.49 -0.32 1.29 16 47 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 394.73 15.07 5.95 5.95 Total: -1.00 -32.37 394.73 -7.95 -40.32 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -5.59 Total: 7.96 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -2.94 Total: -17.47 kcal Atomic # 7 Polarization: -30.59 SS G_CDS: 0.42 Total: -30.16 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.77 Total: -20.98 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.37 -7.95 -40.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492138179.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.379 kcal (2) G-P(sol) polarization free energy of solvation -32.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds