Wall clock time and date at job start Wed Apr 1 2020 04:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00233 * 2 1 4 4 H 1.48499 * 109.47447 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47353 * 300.00435 * 3 2 1 6 6 H 1.48505 * 109.47110 * 60.00314 * 3 2 1 7 7 C 1.38719 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00120 * 179.97438 * 7 2 1 9 9 O 1.34786 * 120.00264 * 359.97438 * 7 2 1 10 10 C 1.35569 * 117.00334 * 174.94117 * 9 7 2 11 11 C 1.39172 * 119.89570 * 5.58577 * 10 9 7 12 12 C 1.37597 * 120.10057 * 180.02562 * 11 10 9 13 13 C 1.40030 * 119.89532 * 0.02562 * 12 11 10 14 14 C 1.46962 * 120.09778 * 179.97438 * 13 12 11 15 15 C 1.35026 * 119.99883 * 179.97438 * 14 13 12 16 16 C 1.46247 * 119.99938 * 179.97438 * 15 14 13 17 17 O 1.21722 * 120.00495 * 0.02562 * 16 15 14 18 18 N 1.34778 * 119.99975 * 180.02562 * 16 15 14 19 19 C 1.46498 * 120.00220 * 180.02562 * 18 16 15 20 20 C 1.52995 * 109.47340 * 180.02562 * 19 18 16 21 21 H 1.09003 * 109.47187 * 60.00367 * 20 19 18 22 22 O 1.42903 * 109.47424 * 300.00314 * 20 19 18 23 23 C 1.53003 * 109.47492 * 179.97438 * 20 19 18 24 24 H 1.09001 * 110.56230 * 57.39720 * 23 20 19 25 25 C 1.54504 * 110.51193 * 294.72165 * 23 20 19 26 26 C 1.54478 * 104.06248 * 241.35263 * 25 23 20 27 27 O 1.44429 * 104.90071 * 335.96208 * 26 25 23 28 28 C 1.44696 * 105.13318 * 40.50190 * 27 26 25 29 29 C 1.40023 * 119.79751 * 0.24977 * 13 12 11 30 30 C 1.37594 * 119.89753 * 359.46903 * 29 13 12 31 31 H 0.97004 * 119.99850 * 359.97438 * 1 2 3 32 32 H 1.07996 * 119.95488 * 359.97438 * 11 10 9 33 33 H 1.07997 * 120.05741 * 180.02562 * 12 11 10 34 34 H 1.08004 * 120.00304 * 359.97438 * 14 13 12 35 35 H 1.08004 * 119.99812 * 0.02562 * 15 14 13 36 36 H 0.97005 * 119.99917 * 0.02562 * 18 16 15 37 37 H 1.09000 * 109.47414 * 60.00269 * 19 18 16 38 38 H 1.09000 * 109.47222 * 300.00017 * 19 18 16 39 39 H 0.96702 * 113.99532 * 304.98969 * 22 20 19 40 40 H 1.09000 * 110.51079 * 122.70981 * 25 23 20 41 41 H 1.08998 * 110.63118 * 0.04933 * 25 23 20 42 42 H 1.08994 * 110.37883 * 94.85364 * 26 25 23 43 43 H 1.09000 * 110.37368 * 217.07992 * 26 25 23 44 44 H 1.09002 * 110.35010 * 200.67718 * 28 27 26 45 45 H 1.08991 * 110.45169 * 78.40682 * 28 27 26 46 46 H 1.07999 * 120.04742 * 179.74465 * 29 13 12 47 47 H 1.07997 * 119.94631 * 180.29524 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0087 -1.2014 -0.0005 8 1 3.0887 -1.2014 -0.0010 9 8 1.3348 -2.3687 -0.0005 10 6 2.0690 -3.5033 -0.1076 11 6 3.4589 -3.4340 -0.0937 12 6 4.2083 -4.5829 -0.2026 13 6 3.5702 -5.8230 -0.3281 14 6 4.3662 -7.0528 -0.4452 15 6 3.7489 -8.2477 -0.5656 16 6 4.5410 -9.4715 -0.6828 17 8 5.7567 -9.4131 -0.6713 18 7 3.9248 -10.6641 -0.8035 19 6 4.7182 -11.8900 -0.9203 20 6 3.7819 -13.0936 -1.0443 21 1 3.1580 -12.9788 -1.9307 22 8 2.9512 -13.1726 0.1158 23 6 4.6105 -14.3740 -1.1669 24 1 5.2757 -14.4830 -0.3104 25 6 5.4191 -14.3716 -2.4835 26 6 4.8889 -15.6023 -3.2519 27 8 4.3624 -16.4787 -2.2317 28 6 3.6873 -15.6059 -1.2956 29 6 2.1716 -5.8872 -0.3474 30 6 1.4305 -4.7336 -0.2321 31 1 -0.4850 0.8401 0.0004 32 1 3.9502 -2.4770 0.0019 33 1 5.2868 -4.5283 -0.1913 34 1 5.4450 -7.0010 -0.4351 35 1 2.6701 -8.2995 -0.5762 36 1 2.9559 -10.7106 -0.8130 37 1 5.3424 -12.0047 -0.0341 38 1 5.3514 -11.8301 -1.8055 39 1 3.4410 -13.1990 0.9492 40 1 6.4840 -14.4794 -2.2778 41 1 5.2306 -13.4585 -3.0482 42 1 4.0993 -15.3071 -3.9429 43 1 5.7002 -16.0917 -3.7908 44 1 3.5761 -16.0992 -0.3300 45 1 2.7129 -15.3109 -1.6847 46 1 1.6753 -6.8411 -0.4481 47 1 0.3517 -4.7827 -0.2420 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492138179.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:28 Heat of formation + Delta-G solvation = -149.958782 kcal Electronic energy + Delta-G solvation = -28220.943903 eV Core-core repulsion = 23947.468577 eV Total energy + Delta-G solvation = -4273.475326 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.08668 -40.82366 -40.32070 -38.55226 -38.18238 -35.28717 -34.73258 -34.00205 -33.60745 -31.96727 -30.43863 -30.01293 -28.72635 -27.46973 -25.03144 -23.84891 -23.75099 -23.41893 -22.05175 -21.54463 -20.63818 -19.76448 -18.86941 -18.30322 -18.09533 -17.68008 -16.80819 -16.59883 -16.50044 -16.31808 -16.08334 -15.99029 -15.87597 -15.62036 -15.43842 -15.23874 -14.79239 -14.67966 -14.51311 -14.10308 -13.91752 -13.70470 -13.60309 -13.30678 -13.14887 -12.90583 -12.72854 -12.56614 -12.54612 -12.29582 -12.19939 -12.10477 -12.09004 -11.55376 -11.21469 -11.17968 -11.12177 -10.84948 -10.76558 -10.58589 -10.08733 -9.89111 -8.67731 -8.52310 -6.18440 -0.24387 0.58680 1.13540 1.36075 1.45188 1.53897 2.15135 2.20469 2.37180 2.86577 3.01817 3.17818 3.26260 3.42726 3.49829 3.73354 3.78872 3.89034 3.95254 4.01540 4.08882 4.14696 4.23293 4.31430 4.36335 4.36622 4.41425 4.48048 4.64410 4.69437 4.72827 4.85242 4.87548 4.90436 4.94853 5.03396 5.07253 5.18980 5.19882 5.28097 5.33729 5.44321 5.59034 5.64089 5.81810 5.81952 5.97508 6.10779 6.58110 6.73203 6.92250 7.27768 7.69354 8.69948 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.035012 B = 0.001367 C = 0.001341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.533913 B =20472.330319 C =20880.789691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.018 4.018 3 Si 1.018 2.982 4 H -0.251 1.251 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.417 4.417 8 H 0.106 0.894 9 O -0.220 6.220 10 C 0.129 3.871 11 C -0.249 4.249 12 C -0.040 4.040 13 C -0.171 4.171 14 C 0.015 3.985 15 C -0.246 4.246 16 C 0.550 3.450 17 O -0.595 6.595 18 N -0.711 5.711 19 C 0.087 3.913 20 C 0.121 3.879 21 H 0.112 0.888 22 O -0.564 6.564 23 C -0.144 4.144 24 H 0.096 0.904 25 C -0.152 4.152 26 C 0.037 3.963 27 O -0.405 6.405 28 C 0.055 3.945 29 C -0.038 4.038 30 C -0.207 4.207 31 H 0.275 0.725 32 H 0.124 0.876 33 H 0.144 0.856 34 H 0.125 0.875 35 H 0.150 0.850 36 H 0.417 0.583 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.391 0.609 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.067 0.933 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.065 0.935 46 H 0.160 0.840 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.227 -28.522 -3.318 30.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.217 4.217 3 Si 0.838 3.162 4 H -0.174 1.174 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.492 4.492 8 H 0.123 0.877 9 O -0.126 6.126 10 C 0.077 3.923 11 C -0.268 4.268 12 C -0.058 4.058 13 C -0.172 4.172 14 C -0.005 4.005 15 C -0.267 4.267 16 C 0.341 3.659 17 O -0.479 6.479 18 N -0.363 5.363 19 C -0.037 4.037 20 C 0.061 3.939 21 H 0.129 0.871 22 O -0.372 6.372 23 C -0.164 4.164 24 H 0.114 0.886 25 C -0.189 4.189 26 C -0.039 4.039 27 O -0.324 6.324 28 C -0.022 4.022 29 C -0.056 4.056 30 C -0.226 4.226 31 H 0.084 0.916 32 H 0.142 0.858 33 H 0.162 0.838 34 H 0.143 0.857 35 H 0.168 0.832 36 H 0.254 0.746 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.240 0.760 40 H 0.102 0.898 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.083 0.917 46 H 0.177 0.823 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.188 -28.564 -3.723 30.236 hybrid contribution 0.160 1.263 0.422 1.341 sum 9.348 -27.301 -3.301 29.045 Atomic orbital electron populations 1.70155 1.08051 1.29018 1.47803 1.26598 0.96818 1.02738 0.95502 0.84526 0.78332 0.74771 0.78602 1.17405 1.19338 1.19311 1.21942 0.92723 0.81219 1.53362 0.87701 1.83884 1.36263 1.12766 1.79637 1.20195 0.91559 0.88024 0.92516 1.21197 0.93056 1.00133 1.12410 1.21320 1.00098 0.90702 0.93722 1.18793 0.93232 0.92865 1.12268 1.22169 0.99250 0.90591 0.88444 1.22770 1.01085 0.91263 1.11561 1.18498 0.87116 0.84844 0.75404 1.90782 1.15847 1.87986 1.53248 1.45643 1.11255 1.05257 1.74108 1.22142 0.94634 0.83967 1.02937 1.22055 0.91194 0.90521 0.90142 0.87052 1.86595 1.37167 1.96483 1.16908 1.23128 0.97779 0.95291 1.00164 0.88552 1.23030 1.01097 0.99443 0.95353 1.23585 0.98794 0.90458 0.91088 1.89177 1.73459 1.31930 1.37862 1.23473 0.95103 0.89613 0.94000 1.21288 0.92669 0.97472 0.94123 1.20420 1.00376 0.90208 1.11588 0.91609 0.85803 0.83787 0.85719 0.83219 0.74634 0.91402 0.90737 0.75952 0.89840 0.89175 0.91479 0.88309 0.88478 0.91653 0.82256 0.85953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.18 13.67 21.62 0.30 -53.88 16 2 C -0.02 -0.98 5.49 84.86 0.47 -0.51 16 3 Si 1.02 41.33 29.55 68.60 2.03 43.36 16 4 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 5 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 6 H -0.27 -10.46 7.11 99.48 0.71 -9.76 16 7 C -0.42 -23.37 9.48 67.94 0.64 -22.72 16 8 H 0.11 5.38 5.18 -2.91 -0.02 5.37 16 9 O -0.22 -12.73 9.74 -20.31 -0.20 -12.93 16 10 C 0.13 6.12 6.66 22.72 0.15 6.27 16 11 C -0.25 -10.35 9.14 22.34 0.20 -10.15 16 12 C -0.04 -1.35 9.78 22.55 0.22 -1.13 16 13 C -0.17 -5.20 5.87 -20.12 -0.12 -5.32 16 14 C 0.02 0.40 9.45 23.82 0.23 0.62 16 15 C -0.25 -5.33 9.41 23.61 0.22 -5.11 16 16 C 0.55 12.45 7.74 86.32 0.67 13.12 16 17 O -0.60 -18.15 16.23 -4.42 -0.07 -18.22 16 18 N -0.71 -10.42 5.44 -467.51 -2.54 -12.97 16 19 C 0.09 1.01 5.11 86.38 0.44 1.45 16 20 C 0.12 0.89 2.33 30.59 0.07 0.96 16 21 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 22 O -0.56 -4.65 12.78 -148.98 -1.90 -6.56 16 23 C -0.14 -1.06 2.90 -9.78 -0.03 -1.09 16 24 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 25 C -0.15 -1.13 6.22 31.61 0.20 -0.93 16 26 C 0.04 0.36 7.62 72.48 0.55 0.91 16 27 O -0.40 -6.14 11.67 -148.98 -1.74 -7.88 16 28 C 0.05 0.56 6.89 72.48 0.50 1.06 16 29 C -0.04 -1.16 9.40 22.55 0.21 -0.95 16 30 C -0.21 -8.16 9.97 22.34 0.22 -7.94 16 31 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 32 H 0.12 5.23 5.62 -2.91 -0.02 5.21 16 33 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 34 H 0.12 3.27 7.52 -2.91 -0.02 3.24 16 35 H 0.15 2.47 6.07 -2.91 -0.02 2.45 16 36 H 0.42 4.41 8.33 -92.70 -0.77 3.64 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.07 0.96 6.86 -2.39 -0.02 0.94 16 39 H 0.39 1.30 9.03 -74.06 -0.67 0.63 16 40 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.09 0.55 6.81 -2.39 -0.02 0.54 16 42 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.07 0.67 7.87 -2.39 -0.02 0.65 16 46 H 0.16 3.51 6.16 -2.91 -0.02 3.50 16 47 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -75.31 394.73 0.30 -75.01 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: -0.41 Total: 25.53 kcal Atomic # 6 Polarization: -36.31 SS G_CDS: 4.85 Total: -31.46 kcal Atomic # 7 Polarization: -64.60 SS G_CDS: -2.25 Total: -66.85 kcal Atomic # 8 Polarization: -41.67 SS G_CDS: -3.91 Total: -45.58 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -75.31 0.30 -75.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492138179.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.953 kcal (2) G-P(sol) polarization free energy of solvation -75.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds