Wall clock time and date at job start Wed Apr 1 2020 04:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00242 * 2 1 4 4 H 1.48497 * 109.47140 * 270.00378 * 3 2 1 5 5 H 1.48500 * 109.46755 * 30.00058 * 3 2 1 6 6 H 1.48494 * 109.47098 * 149.99645 * 3 2 1 7 7 C 1.38715 * 119.99576 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99809 * 180.02562 * 7 2 1 9 9 O 1.34781 * 120.00509 * 359.97438 * 7 2 1 10 10 C 1.35568 * 117.00593 * 185.06027 * 9 7 2 11 11 C 1.39176 * 119.89457 * 354.36290 * 10 9 7 12 12 C 1.37597 * 120.10182 * 179.97438 * 11 10 9 13 13 C 1.40026 * 119.89799 * 359.97438 * 12 11 10 14 14 C 1.46958 * 120.10274 * 179.97438 * 13 12 11 15 15 C 1.35020 * 120.00012 * 136.67644 * 14 13 12 16 16 C 1.46255 * 120.00075 * 348.69148 * 15 14 13 17 17 O 1.21722 * 120.00149 * 353.20435 * 16 15 14 18 18 N 1.34777 * 120.00139 * 173.21161 * 16 15 14 19 19 C 1.46499 * 120.00162 * 179.97438 * 18 16 15 20 20 C 1.52996 * 109.47185 * 179.97438 * 19 18 16 21 21 H 1.09001 * 109.47666 * 60.00012 * 20 19 18 22 22 O 1.42904 * 109.47460 * 299.99833 * 20 19 18 23 23 C 1.53002 * 109.47134 * 180.02562 * 20 19 18 24 24 H 1.09002 * 110.45544 * 59.29894 * 23 20 19 25 25 C 1.54510 * 110.50940 * 181.90391 * 23 20 19 26 26 C 1.54485 * 104.06161 * 118.64579 * 25 23 20 27 27 O 1.44423 * 104.80303 * 23.97628 * 26 25 23 28 28 C 1.44643 * 105.36932 * 319.56825 * 27 26 25 29 29 C 1.40026 * 119.79638 * 0.25045 * 13 12 11 30 30 C 1.37599 * 119.89388 * 359.47062 * 29 13 12 31 31 H 0.96996 * 119.99559 * 359.97438 * 1 2 3 32 32 H 1.08009 * 119.95207 * 359.97438 * 11 10 9 33 33 H 1.08009 * 120.05400 * 180.02562 * 12 11 10 34 34 H 1.08001 * 120.00319 * 316.68056 * 14 13 12 35 35 H 1.07998 * 120.00159 * 168.68153 * 15 14 13 36 36 H 0.97004 * 119.99620 * 359.97438 * 18 16 15 37 37 H 1.08992 * 109.47182 * 299.99765 * 19 18 16 38 38 H 1.09003 * 109.47132 * 59.99698 * 19 18 16 39 39 H 0.96698 * 113.99628 * 300.00712 * 22 20 19 40 40 H 1.09003 * 110.50943 * 237.28599 * 25 23 20 41 41 H 1.08996 * 110.51679 * 359.97438 * 25 23 20 42 42 H 1.08998 * 110.37267 * 142.80856 * 26 25 23 43 43 H 1.08994 * 110.36752 * 265.14325 * 26 25 23 44 44 H 1.09003 * 110.34085 * 281.59193 * 28 27 26 45 45 H 1.09001 * 110.50774 * 159.19042 * 28 27 26 46 46 H 1.07994 * 120.04952 * 179.74724 * 29 13 12 47 47 H 1.08002 * 119.94532 * 180.29295 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0086 -1.2014 -0.0005 8 1 3.0887 -1.2014 -0.0001 9 8 1.3348 -2.3686 -0.0005 10 6 2.0690 -3.5033 0.1055 11 6 3.4589 -3.4342 0.0895 12 6 4.2083 -4.5831 0.1973 13 6 3.5704 -5.8232 0.3238 14 6 4.3664 -7.0532 0.4387 15 6 4.0229 -7.9979 1.3402 16 6 3.0222 -7.7015 2.3648 17 8 2.5898 -6.5699 2.4840 18 7 2.5788 -8.6812 3.1772 19 6 1.5769 -8.3842 4.2039 20 6 1.2493 -9.6607 4.9811 21 1 2.1545 -10.0396 5.4557 22 8 0.7338 -10.6460 4.0836 23 6 0.2024 -9.3506 6.0530 24 1 -0.7062 -8.9587 5.5959 25 6 -0.1115 -10.6143 6.8847 26 6 0.2997 -10.2288 8.3230 27 8 0.2263 -8.7868 8.3538 28 6 0.7649 -8.3483 7.0851 29 6 2.1717 -5.8883 0.3346 30 6 1.4306 -4.7335 0.2320 31 1 -0.4849 0.8400 0.0004 32 1 3.9502 -2.4772 -0.0077 33 1 5.2869 -4.5285 0.1852 34 1 5.2261 -7.2015 -0.1979 35 1 4.4869 -8.9724 1.3045 36 1 2.9232 -9.5831 3.0820 37 1 1.9698 -7.6325 4.8882 38 1 0.6715 -8.0057 3.7293 39 1 -0.0734 -10.3761 3.6248 40 1 -1.1758 -10.8457 6.8409 41 1 0.4787 -11.4601 6.5321 42 1 -0.3944 -10.6596 9.0446 43 1 1.3171 -10.5614 8.5288 44 1 1.8540 -8.3909 7.1008 45 1 0.4272 -7.3376 6.8557 46 1 1.6755 -6.8429 0.4279 47 1 0.3518 -4.7823 0.2451 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492138186.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:41 Heat of formation + Delta-G solvation = -107.366881 kcal Electronic energy + Delta-G solvation = -29621.079501 eV Core-core repulsion = 25349.451098 eV Total energy + Delta-G solvation = -4271.628403 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.34444 -39.61880 -38.71995 -37.62766 -36.43943 -34.26052 -33.05640 -32.81415 -32.12487 -30.37685 -30.12249 -28.48566 -27.31879 -25.43341 -24.22891 -23.19048 -22.23762 -21.76897 -21.26648 -20.77169 -19.29231 -17.94416 -17.35485 -17.23810 -17.01666 -16.63827 -16.25550 -15.87106 -15.40837 -15.16230 -14.80654 -14.59212 -14.40564 -14.18026 -13.90956 -13.75326 -13.49231 -13.33082 -13.20871 -12.99705 -12.78660 -12.55000 -12.33072 -12.20509 -12.17218 -11.71108 -11.69367 -11.37413 -11.29980 -11.06986 -11.01628 -10.68800 -10.62469 -10.45947 -10.41401 -10.18886 -9.51307 -9.42395 -9.16408 -9.01654 -8.69673 -7.92817 -6.86653 -6.45926 -4.01642 1.23941 2.41976 2.69830 3.13548 3.15045 3.16158 3.19391 3.57360 3.62267 3.82656 3.97151 4.08935 4.23659 4.45016 4.58288 4.67408 4.69499 4.75597 4.87000 4.98512 5.08031 5.12721 5.23223 5.29436 5.33695 5.35290 5.39777 5.46710 5.53564 5.56391 5.64350 5.73122 5.73805 5.84376 6.24648 6.32435 6.36312 6.42280 6.47835 6.59478 6.78556 7.03292 7.12334 7.12907 7.35945 7.44813 7.50224 7.65320 7.91999 8.00863 8.52249 8.99809 9.71658 10.71957 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011799 B = 0.002211 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.449667 B =12659.137087 C =14279.558278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.390 4.390 8 H 0.094 0.906 9 O -0.173 6.173 10 C 0.171 3.829 11 C -0.251 4.251 12 C -0.041 4.041 13 C -0.190 4.190 14 C 0.028 3.972 15 C -0.267 4.267 16 C 0.538 3.462 17 O -0.512 6.512 18 N -0.732 5.732 19 C 0.087 3.913 20 C 0.107 3.893 21 H 0.106 0.894 22 O -0.556 6.556 23 C -0.153 4.153 24 H 0.092 0.908 25 C -0.144 4.144 26 C 0.042 3.958 27 O -0.375 6.375 28 C 0.049 3.951 29 C 0.013 3.987 30 C -0.203 4.203 31 H 0.271 0.729 32 H 0.126 0.874 33 H 0.106 0.894 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.399 0.601 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.380 0.620 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.099 0.901 46 H 0.100 0.900 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.244 -22.790 10.025 25.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.166 4.166 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.466 4.466 8 H 0.111 0.889 9 O -0.075 6.075 10 C 0.116 3.884 11 C -0.270 4.270 12 C -0.060 4.060 13 C -0.191 4.191 14 C 0.008 3.992 15 C -0.288 4.288 16 C 0.328 3.672 17 O -0.388 6.388 18 N -0.386 5.386 19 C -0.037 4.037 20 C 0.047 3.953 21 H 0.123 0.877 22 O -0.361 6.361 23 C -0.173 4.173 24 H 0.110 0.890 25 C -0.182 4.182 26 C -0.035 4.035 27 O -0.293 6.293 28 C -0.028 4.028 29 C -0.006 4.006 30 C -0.222 4.222 31 H 0.080 0.920 32 H 0.144 0.856 33 H 0.124 0.876 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.234 0.766 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.227 0.773 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.109 0.891 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.117 0.883 46 H 0.118 0.882 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.903 -21.911 10.492 24.605 hybrid contribution 0.288 0.508 -0.263 0.640 sum 4.191 -21.403 10.229 24.089 Atomic orbital electron populations 1.70026 1.06028 1.27759 1.45633 1.25329 0.95852 0.98919 0.96490 0.85694 0.78970 0.79961 0.78720 1.19832 1.20221 1.19134 1.21395 0.91919 0.80782 1.52482 0.88887 1.83903 1.34767 1.11652 1.77184 1.19521 0.90263 0.87735 0.90845 1.20956 0.93661 0.98796 1.13581 1.20748 0.97894 0.91566 0.95769 1.18293 0.93018 0.92255 1.15522 1.22338 0.93836 0.91323 0.91682 1.22576 1.05235 1.00995 1.00020 1.18523 0.81912 0.84761 0.82017 1.91005 1.57165 1.20511 1.70133 1.45840 1.44026 1.12589 1.36129 1.21995 0.93301 0.97187 0.91267 1.22186 0.96128 0.88163 0.88786 0.87656 1.86567 1.46817 1.43021 1.59726 1.23233 1.00066 0.96781 0.97184 0.89002 1.22925 1.02865 0.97841 0.94577 1.23463 1.01112 0.81829 0.97124 1.89190 1.84043 1.19981 1.36109 1.23533 0.98223 0.98777 0.82274 1.20425 0.92103 0.96139 0.91924 1.19996 0.99270 0.90263 1.12721 0.91955 0.85645 0.87606 0.86070 0.86150 0.76646 0.90653 0.91086 0.77253 0.90488 0.89649 0.89064 0.92253 0.91778 0.88299 0.88166 0.86890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.53 13.67 55.48 0.76 -24.77 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.78 29.55 -169.99 -5.02 15.76 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.39 -11.12 9.48 30.91 0.29 -10.83 16 8 H 0.09 2.46 5.18 -52.48 -0.27 2.19 16 9 O -0.17 -5.08 9.74 0.75 0.01 -5.08 16 10 C 0.17 4.36 6.66 -38.89 -0.26 4.10 16 11 C -0.25 -5.73 9.14 -39.47 -0.36 -6.09 16 12 C -0.04 -0.80 9.78 -39.15 -0.38 -1.19 16 13 C -0.19 -3.50 4.54 -105.03 -0.48 -3.97 16 14 C 0.03 0.39 9.80 -37.20 -0.36 0.02 16 15 C -0.27 -3.32 9.90 -37.51 -0.37 -3.69 16 16 C 0.54 7.70 6.77 -13.04 -0.09 7.61 16 17 O -0.51 -9.76 12.18 5.17 0.06 -9.69 16 18 N -0.73 -7.57 5.44 -61.76 -0.34 -7.91 16 19 C 0.09 0.81 5.15 -4.04 -0.02 0.79 16 20 C 0.11 0.70 2.31 -26.73 -0.06 0.64 16 21 H 0.11 0.66 8.12 -51.93 -0.42 0.24 16 22 O -0.56 -3.74 12.67 -35.23 -0.45 -4.18 16 23 C -0.15 -1.01 2.87 -89.05 -0.26 -1.26 16 24 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 25 C -0.14 -0.87 6.53 -25.16 -0.16 -1.03 16 26 C 0.04 0.28 7.64 37.94 0.29 0.57 16 27 O -0.37 -3.72 11.65 -35.23 -0.41 -4.13 16 28 C 0.05 0.39 6.21 37.93 0.24 0.63 16 29 C 0.01 0.25 6.60 -39.14 -0.26 -0.01 16 30 C -0.20 -4.66 9.97 -39.47 -0.39 -5.05 16 31 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.13 2.84 5.62 -52.48 -0.29 2.54 16 33 H 0.11 1.72 8.06 -52.48 -0.42 1.29 16 34 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.40 3.21 8.33 -40.82 -0.34 2.87 16 37 H 0.08 0.78 7.33 -51.93 -0.38 0.40 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.38 1.74 9.04 45.56 0.41 2.15 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.49 7.57 -51.93 -0.39 0.09 16 42 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.47 7.79 -51.93 -0.40 0.07 16 45 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.10 1.81 7.02 -52.49 -0.37 1.44 16 47 H 0.11 2.52 8.06 -52.49 -0.42 2.10 16 LS Contribution 390.48 15.07 5.88 5.88 Total: -1.00 -35.26 390.48 -8.07 -43.32 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -5.83 Total: 8.57 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -2.74 Total: -17.77 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.42 Total: -32.68 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.79 Total: -23.09 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.26 -8.07 -43.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492138186.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.044 kcal (2) G-P(sol) polarization free energy of solvation -35.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds