Wall clock time and date at job start Wed Apr 1 2020 04:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00242 * 2 1 4 4 H 1.48497 * 109.47140 * 270.00378 * 3 2 1 5 5 H 1.48500 * 109.46755 * 30.00058 * 3 2 1 6 6 H 1.48494 * 109.47098 * 149.99645 * 3 2 1 7 7 C 1.38715 * 119.99576 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99809 * 180.02562 * 7 2 1 9 9 O 1.34781 * 120.00509 * 359.97438 * 7 2 1 10 10 C 1.35568 * 117.00593 * 185.06027 * 9 7 2 11 11 C 1.39176 * 119.89457 * 354.36290 * 10 9 7 12 12 C 1.37597 * 120.10182 * 179.97438 * 11 10 9 13 13 C 1.40026 * 119.89799 * 359.97438 * 12 11 10 14 14 C 1.46958 * 120.10274 * 179.97438 * 13 12 11 15 15 C 1.35020 * 120.00012 * 136.67644 * 14 13 12 16 16 C 1.46255 * 120.00075 * 348.69148 * 15 14 13 17 17 O 1.21722 * 120.00149 * 353.20435 * 16 15 14 18 18 N 1.34777 * 120.00139 * 173.21161 * 16 15 14 19 19 C 1.46499 * 120.00162 * 179.97438 * 18 16 15 20 20 C 1.52996 * 109.47185 * 179.97438 * 19 18 16 21 21 H 1.09001 * 109.47666 * 60.00012 * 20 19 18 22 22 O 1.42904 * 109.47460 * 299.99833 * 20 19 18 23 23 C 1.53002 * 109.47134 * 180.02562 * 20 19 18 24 24 H 1.09002 * 110.45544 * 59.29894 * 23 20 19 25 25 C 1.54510 * 110.50940 * 181.90391 * 23 20 19 26 26 C 1.54485 * 104.06161 * 118.64579 * 25 23 20 27 27 O 1.44423 * 104.80303 * 23.97628 * 26 25 23 28 28 C 1.44643 * 105.36932 * 319.56825 * 27 26 25 29 29 C 1.40026 * 119.79638 * 0.25045 * 13 12 11 30 30 C 1.37599 * 119.89388 * 359.47062 * 29 13 12 31 31 H 0.96996 * 119.99559 * 359.97438 * 1 2 3 32 32 H 1.08009 * 119.95207 * 359.97438 * 11 10 9 33 33 H 1.08009 * 120.05400 * 180.02562 * 12 11 10 34 34 H 1.08001 * 120.00319 * 316.68056 * 14 13 12 35 35 H 1.07998 * 120.00159 * 168.68153 * 15 14 13 36 36 H 0.97004 * 119.99620 * 359.97438 * 18 16 15 37 37 H 1.08992 * 109.47182 * 299.99765 * 19 18 16 38 38 H 1.09003 * 109.47132 * 59.99698 * 19 18 16 39 39 H 0.96698 * 113.99628 * 300.00712 * 22 20 19 40 40 H 1.09003 * 110.50943 * 237.28599 * 25 23 20 41 41 H 1.08996 * 110.51679 * 359.97438 * 25 23 20 42 42 H 1.08998 * 110.37267 * 142.80856 * 26 25 23 43 43 H 1.08994 * 110.36752 * 265.14325 * 26 25 23 44 44 H 1.09003 * 110.34085 * 281.59193 * 28 27 26 45 45 H 1.09001 * 110.50774 * 159.19042 * 28 27 26 46 46 H 1.07994 * 120.04952 * 179.74724 * 29 13 12 47 47 H 1.08002 * 119.94532 * 180.29295 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0086 -1.2014 -0.0005 8 1 3.0887 -1.2014 -0.0001 9 8 1.3348 -2.3686 -0.0005 10 6 2.0690 -3.5033 0.1055 11 6 3.4589 -3.4342 0.0895 12 6 4.2083 -4.5831 0.1973 13 6 3.5704 -5.8232 0.3238 14 6 4.3664 -7.0532 0.4387 15 6 4.0229 -7.9979 1.3402 16 6 3.0222 -7.7015 2.3648 17 8 2.5898 -6.5699 2.4840 18 7 2.5788 -8.6812 3.1772 19 6 1.5769 -8.3842 4.2039 20 6 1.2493 -9.6607 4.9811 21 1 2.1545 -10.0396 5.4557 22 8 0.7338 -10.6460 4.0836 23 6 0.2024 -9.3506 6.0530 24 1 -0.7062 -8.9587 5.5959 25 6 -0.1115 -10.6143 6.8847 26 6 0.2997 -10.2288 8.3230 27 8 0.2263 -8.7868 8.3538 28 6 0.7649 -8.3483 7.0851 29 6 2.1717 -5.8883 0.3346 30 6 1.4306 -4.7335 0.2320 31 1 -0.4849 0.8400 0.0004 32 1 3.9502 -2.4772 -0.0077 33 1 5.2869 -4.5285 0.1852 34 1 5.2261 -7.2015 -0.1979 35 1 4.4869 -8.9724 1.3045 36 1 2.9232 -9.5831 3.0820 37 1 1.9698 -7.6325 4.8882 38 1 0.6715 -8.0057 3.7293 39 1 -0.0734 -10.3761 3.6248 40 1 -1.1758 -10.8457 6.8409 41 1 0.4787 -11.4601 6.5321 42 1 -0.3944 -10.6596 9.0446 43 1 1.3171 -10.5614 8.5288 44 1 1.8540 -8.3909 7.1008 45 1 0.4272 -7.3376 6.8557 46 1 1.6755 -6.8429 0.4279 47 1 0.3518 -4.7823 0.2451 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492138186.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:40 Heat of formation + Delta-G solvation = -135.227980 kcal Electronic energy + Delta-G solvation = -29622.287649 eV Core-core repulsion = 25349.451098 eV Total energy + Delta-G solvation = -4272.836551 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.22022 -40.77444 -40.25525 -38.49675 -37.94029 -35.25267 -34.58631 -33.92106 -33.43406 -31.82087 -31.04601 -29.77722 -28.34151 -27.37600 -25.08979 -24.12561 -23.51815 -23.09173 -22.33149 -21.66014 -20.50506 -19.76981 -18.90273 -18.10706 -17.87743 -17.67997 -16.92629 -16.68694 -16.45557 -16.34236 -16.18535 -16.02646 -15.66206 -15.47272 -15.44352 -14.93792 -14.67382 -14.52689 -14.36577 -14.21804 -13.95677 -13.71831 -13.56275 -13.52770 -13.06119 -12.99916 -12.81761 -12.63811 -12.35202 -12.24183 -12.22366 -12.12561 -11.83971 -11.63617 -11.24258 -11.14072 -10.92503 -10.81324 -10.64113 -10.39064 -10.04181 -9.56687 -8.55477 -8.48750 -6.16064 -0.00091 0.71595 1.12890 1.33092 1.45062 1.51673 2.16718 2.29447 2.49061 2.86846 2.97881 3.20715 3.26475 3.48396 3.52466 3.68110 3.86825 3.95981 4.02888 4.08083 4.11951 4.16123 4.17131 4.21717 4.31565 4.40310 4.54686 4.60454 4.68049 4.72965 4.77305 4.78369 4.83469 4.95654 5.05635 5.07776 5.09795 5.16891 5.25751 5.27700 5.46342 5.51424 5.68152 5.72673 5.79431 5.85097 6.02215 6.25132 6.66178 6.73574 6.95098 7.45835 7.77301 8.74321 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011799 B = 0.002211 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.449667 B =12659.137087 C =14279.558278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.025 4.025 3 Si 1.022 2.978 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.254 1.254 7 C -0.415 4.415 8 H 0.102 0.898 9 O -0.231 6.231 10 C 0.126 3.874 11 C -0.260 4.260 12 C -0.048 4.048 13 C -0.160 4.160 14 C 0.004 3.996 15 C -0.231 4.231 16 C 0.524 3.476 17 O -0.569 6.569 18 N -0.710 5.710 19 C 0.085 3.915 20 C 0.127 3.873 21 H 0.118 0.882 22 O -0.559 6.559 23 C -0.148 4.148 24 H 0.089 0.911 25 C -0.137 4.137 26 C 0.035 3.965 27 O -0.404 6.404 28 C 0.044 3.956 29 C 0.015 3.985 30 C -0.221 4.221 31 H 0.273 0.727 32 H 0.119 0.881 33 H 0.148 0.852 34 H 0.168 0.832 35 H 0.173 0.827 36 H 0.416 0.584 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.389 0.611 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.087 0.913 46 H 0.120 0.880 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.587 -26.673 10.421 29.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.222 4.222 3 Si 0.840 3.160 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.177 1.177 7 C -0.491 4.491 8 H 0.120 0.880 9 O -0.137 6.137 10 C 0.076 3.924 11 C -0.279 4.279 12 C -0.066 4.066 13 C -0.161 4.161 14 C -0.015 4.015 15 C -0.251 4.251 16 C 0.315 3.685 17 O -0.449 6.449 18 N -0.363 5.363 19 C -0.039 4.039 20 C 0.067 3.933 21 H 0.135 0.865 22 O -0.366 6.366 23 C -0.168 4.168 24 H 0.108 0.892 25 C -0.174 4.174 26 C -0.041 4.041 27 O -0.324 6.324 28 C -0.033 4.033 29 C -0.003 4.003 30 C -0.241 4.241 31 H 0.082 0.918 32 H 0.137 0.863 33 H 0.165 0.835 34 H 0.186 0.814 35 H 0.190 0.810 36 H 0.253 0.747 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.239 0.761 40 H 0.099 0.901 41 H 0.113 0.887 42 H 0.119 0.881 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.105 0.895 46 H 0.137 0.863 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.278 -25.919 10.897 29.044 hybrid contribution -0.642 1.136 -0.221 1.323 sum 6.636 -24.784 10.676 27.789 Atomic orbital electron populations 1.70178 1.08137 1.28877 1.48723 1.26675 0.96902 1.02867 0.95754 0.84553 0.77728 0.74266 0.79418 1.18433 1.19501 1.17724 1.21880 0.92596 0.81396 1.53202 0.88041 1.83871 1.36281 1.12732 1.80851 1.20012 0.91714 0.87563 0.93152 1.21096 0.92826 1.00128 1.13827 1.21187 0.99815 0.90640 0.94980 1.18882 0.92820 0.94213 1.10177 1.22572 0.95350 0.89254 0.94370 1.23060 1.02398 1.02231 0.97406 1.19114 0.82122 0.84489 0.82789 1.91015 1.59277 1.22942 1.71699 1.45696 1.43019 1.12687 1.34937 1.22063 0.92363 0.98576 0.90941 1.21986 0.96482 0.86669 0.88168 0.86469 1.86553 1.47498 1.42804 1.59729 1.23173 0.99924 0.96810 0.96861 0.89214 1.22882 1.03279 0.97496 0.93777 1.23666 1.02137 0.80358 0.97981 1.89159 1.84369 1.21901 1.36927 1.23585 0.98625 0.98721 0.82361 1.20659 0.93144 0.95561 0.90930 1.20182 0.99242 0.90963 1.13678 0.91768 0.86279 0.83474 0.81437 0.80972 0.74664 0.91860 0.92494 0.76101 0.90131 0.88673 0.88145 0.91200 0.91103 0.89458 0.86250 0.88087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.56 13.67 21.62 0.30 -58.26 16 2 C -0.02 -1.46 5.49 84.85 0.47 -0.99 16 3 Si 1.02 44.35 29.55 68.60 2.03 46.37 16 4 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 5 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 6 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 7 C -0.41 -25.36 9.48 67.93 0.64 -24.72 16 8 H 0.10 5.71 5.18 -2.91 -0.02 5.69 16 9 O -0.23 -14.83 9.74 -20.24 -0.20 -15.02 16 10 C 0.13 6.89 6.66 22.72 0.15 7.04 16 11 C -0.26 -12.25 9.14 22.34 0.20 -12.05 16 12 C -0.05 -1.80 9.78 22.55 0.22 -1.58 16 13 C -0.16 -5.50 4.54 -20.13 -0.09 -5.59 16 14 C 0.00 0.09 9.80 23.82 0.23 0.32 16 15 C -0.23 -4.34 9.90 23.61 0.23 -4.11 16 16 C 0.52 13.21 6.77 86.33 0.58 13.79 16 17 O -0.57 -21.00 12.18 -4.42 -0.05 -21.05 16 18 N -0.71 -12.19 5.44 -467.51 -2.54 -14.73 16 19 C 0.09 1.45 5.15 86.38 0.44 1.89 16 20 C 0.13 1.33 2.31 30.59 0.07 1.41 16 21 H 0.12 1.04 8.12 -2.39 -0.02 1.02 16 22 O -0.56 -5.64 12.67 -148.98 -1.89 -7.53 16 23 C -0.15 -1.73 2.87 -9.78 -0.03 -1.75 16 24 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 25 C -0.14 -1.34 6.53 31.61 0.21 -1.14 16 26 C 0.03 0.42 7.64 72.49 0.55 0.97 16 27 O -0.40 -7.84 11.65 -148.98 -1.74 -9.58 16 28 C 0.04 0.69 6.21 72.48 0.45 1.14 16 29 C 0.02 0.60 6.60 22.55 0.15 0.75 16 30 C -0.22 -10.75 9.97 22.34 0.22 -10.53 16 31 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 32 H 0.12 5.63 5.62 -2.91 -0.02 5.61 16 33 H 0.15 4.21 8.06 -2.91 -0.02 4.19 16 34 H 0.17 2.36 8.06 -2.91 -0.02 2.33 16 35 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 36 H 0.42 4.58 8.33 -92.71 -0.77 3.81 16 37 H 0.06 1.28 7.33 -2.39 -0.02 1.26 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.39 2.47 9.04 -74.06 -0.67 1.80 16 40 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.09 0.78 7.57 -2.39 -0.02 0.76 16 42 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.07 0.98 7.79 -2.39 -0.02 0.96 16 45 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.12 4.15 7.02 -2.91 -0.02 4.13 16 47 H 0.10 4.95 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -85.90 390.48 0.19 -85.71 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: -0.43 Total: 29.22 kcal Atomic # 6 Polarization: -39.84 SS G_CDS: 4.72 Total: -35.13 kcal Atomic # 7 Polarization: -70.74 SS G_CDS: -2.25 Total: -72.99 kcal Atomic # 8 Polarization: -49.31 SS G_CDS: -3.87 Total: -53.18 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -85.90 0.19 -85.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492138186.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.518 kcal (2) G-P(sol) polarization free energy of solvation -85.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds