Wall clock time and date at job start Wed Apr 1 2020 04:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86794 * 120.00536 * 2 1 4 4 H 1.48499 * 109.47299 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47137 * 299.99792 * 3 2 1 6 6 H 1.48499 * 109.47237 * 59.99585 * 3 2 1 7 7 C 1.38725 * 119.99258 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99723 * 180.02562 * 7 2 1 9 9 O 1.34772 * 120.00371 * 0.02562 * 7 2 1 10 10 C 1.35571 * 117.00328 * 185.52672 * 9 7 2 11 11 C 1.39177 * 119.89482 * 6.00191 * 10 9 7 12 12 C 1.37603 * 120.10260 * 180.02562 * 11 10 9 13 13 C 1.40025 * 119.89375 * 359.97438 * 12 11 10 14 14 C 1.46961 * 120.09987 * 180.02562 * 13 12 11 15 15 C 1.35025 * 120.00178 * 46.74788 * 14 13 12 16 16 C 1.46258 * 119.99884 * 10.56325 * 15 14 13 17 17 O 1.21719 * 119.99977 * 6.99850 * 16 15 14 18 18 N 1.34774 * 120.00204 * 186.99589 * 16 15 14 19 19 C 1.46496 * 120.00367 * 174.87048 * 18 16 15 20 20 C 1.52997 * 109.54003 * 304.51810 * 19 18 16 21 21 O 1.42895 * 109.47459 * 305.37033 * 20 19 18 22 22 C 1.53171 * 109.54569 * 184.34196 * 19 18 16 23 23 C 1.53281 * 109.06545 * 297.02490 * 22 19 18 24 24 O 1.42904 * 109.46234 * 302.44807 * 23 22 19 25 25 C 1.42909 * 114.09685 * 61.15133 * 24 23 22 26 26 C 1.53083 * 109.41724 * 298.84428 * 25 24 23 27 27 C 1.40028 * 119.80195 * 0.26907 * 13 12 11 28 28 C 1.37600 * 119.89294 * 359.42939 * 27 13 12 29 29 H 0.96999 * 119.99517 * 0.02562 * 1 2 3 30 30 H 1.08003 * 119.95194 * 359.97114 * 11 10 9 31 31 H 1.07997 * 120.05617 * 180.02562 * 12 11 10 32 32 H 1.08002 * 120.00371 * 227.02738 * 14 13 12 33 33 H 1.07995 * 120.00503 * 190.56694 * 15 14 13 34 34 H 0.97005 * 119.99972 * 354.86472 * 18 16 15 35 35 H 1.09002 * 109.47537 * 65.37410 * 20 19 18 36 36 H 1.09007 * 109.47229 * 185.36581 * 20 19 18 37 37 H 0.96702 * 114.00382 * 180.02562 * 21 20 19 38 38 H 1.09001 * 109.52554 * 57.01708 * 22 19 18 39 39 H 1.09006 * 109.52315 * 177.20823 * 22 19 18 40 40 H 1.08999 * 109.46412 * 182.44543 * 23 22 19 41 41 H 1.09009 * 109.46258 * 62.44580 * 23 22 19 42 42 H 1.08997 * 109.47818 * 178.85807 * 25 24 23 43 43 H 1.09003 * 109.48580 * 58.83564 * 25 24 23 44 44 H 1.09000 * 109.52365 * 297.70232 * 26 25 24 45 45 H 1.08998 * 109.57594 * 177.54380 * 26 25 24 46 46 H 1.07997 * 120.05194 * 179.72499 * 27 13 12 47 47 H 1.07998 * 119.94629 * 180.26795 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0085 -1.2015 0.0005 8 1 3.0885 -1.2016 0.0010 9 8 1.3346 -2.3686 0.0005 10 6 2.0679 -3.5028 0.1174 11 6 3.4368 -3.4224 0.3555 12 6 4.1853 -4.5709 0.4743 13 6 3.5676 -5.8219 0.3559 14 6 4.3625 -7.0514 0.4826 15 6 5.2421 -7.1851 1.4983 16 6 5.2425 -6.2197 2.5970 17 8 4.3713 -5.3723 2.6630 18 7 6.2076 -6.2684 3.5365 19 6 6.2740 -5.2351 4.5728 20 6 6.3526 -3.8557 3.9156 21 8 7.4504 -3.8254 3.0014 22 6 7.5150 -5.4600 5.4420 23 6 7.3878 -6.8102 6.1564 24 8 6.1889 -6.8265 6.9339 25 6 4.9938 -6.6668 6.1667 26 6 5.0236 -5.3122 5.4543 27 6 2.1909 -5.8979 0.1112 28 6 1.4494 -4.7441 0.0001 29 1 -0.4849 0.8401 -0.0004 30 1 3.9125 -2.4570 0.4463 31 1 5.2474 -4.5076 0.6595 32 1 4.2466 -7.8463 -0.2393 33 1 5.9453 -8.0047 1.4994 34 1 6.8583 -6.9878 3.5266 35 1 5.4260 -3.6562 3.3774 36 1 6.4978 -3.0953 4.6831 37 1 7.5611 -2.9788 2.5474 38 1 8.4051 -5.4607 4.8130 39 1 7.5911 -4.6628 6.1816 40 1 8.2473 -6.9574 6.8105 41 1 7.3525 -7.6104 5.4170 42 1 4.1287 -6.7107 6.8283 43 1 4.9269 -7.4650 5.4275 44 1 5.0494 -4.5120 6.1940 45 1 4.1336 -5.2061 4.8340 46 1 1.7111 -6.8606 0.0147 47 1 0.3869 -4.8018 -0.1843 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492471767.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:01 Heat of formation + Delta-G solvation = -101.071353 kcal Electronic energy + Delta-G solvation = -31597.730574 eV Core-core repulsion = 27326.375165 eV Total energy + Delta-G solvation = -4271.355408 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.79351 -39.14976 -38.42808 -36.97067 -36.31730 -34.72944 -33.07350 -32.21866 -31.60216 -31.35629 -30.08217 -28.08918 -27.34947 -25.36385 -23.97172 -23.66916 -22.67253 -21.80307 -21.18591 -19.48764 -19.14658 -17.98343 -17.36928 -17.35621 -16.67950 -16.30872 -16.12711 -15.91244 -15.09336 -14.84125 -14.69355 -14.48891 -14.39900 -13.94918 -13.82739 -13.57453 -13.45182 -13.22595 -13.16201 -12.89453 -12.65632 -12.60539 -12.42286 -12.22849 -11.80832 -11.69274 -11.55110 -11.31875 -10.99881 -10.89910 -10.75526 -10.60356 -10.58548 -10.42865 -10.06741 -9.82928 -9.39755 -9.29552 -9.11842 -8.86747 -8.69447 -7.93077 -6.87881 -6.46893 -4.02506 1.29037 2.40935 2.67877 3.11766 3.12158 3.17643 3.27237 3.63651 3.67285 3.95475 4.07216 4.40507 4.59969 4.68423 4.73807 4.89838 5.00534 5.06654 5.12977 5.22400 5.23579 5.31480 5.36087 5.42016 5.45998 5.49865 5.61778 5.64245 5.76311 5.81155 5.84386 5.86260 5.92142 6.08384 6.24586 6.33094 6.44104 6.60422 6.64156 6.77788 6.97045 7.03780 7.12027 7.32704 7.46716 7.50557 7.58370 7.72366 7.91941 7.99875 8.58408 8.99118 9.71681 10.71269 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011884 B = 0.003257 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.464439 B = 8593.717642 C = 9781.973273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.388 4.388 8 H 0.092 0.908 9 O -0.175 6.175 10 C 0.170 3.830 11 C -0.241 4.241 12 C 0.011 3.989 13 C -0.182 4.182 14 C 0.023 3.977 15 C -0.261 4.261 16 C 0.547 3.453 17 O -0.510 6.510 18 N -0.720 5.720 19 C 0.189 3.811 20 C 0.062 3.938 21 O -0.569 6.569 22 C -0.155 4.155 23 C 0.061 3.939 24 O -0.384 6.384 25 C 0.067 3.933 26 C -0.168 4.168 27 C -0.047 4.047 28 C -0.208 4.208 29 H 0.270 0.730 30 H 0.122 0.878 31 H 0.098 0.902 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.393 0.607 35 H 0.079 0.921 36 H 0.046 0.954 37 H 0.378 0.622 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.048 0.952 42 H 0.094 0.906 43 H 0.052 0.948 44 H 0.077 0.923 45 H 0.102 0.898 46 H 0.109 0.891 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.559 -13.321 8.583 22.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.464 4.464 8 H 0.110 0.890 9 O -0.077 6.077 10 C 0.115 3.885 11 C -0.261 4.261 12 C -0.007 4.007 13 C -0.183 4.183 14 C 0.004 3.996 15 C -0.282 4.282 16 C 0.337 3.663 17 O -0.387 6.387 18 N -0.373 5.373 19 C 0.103 3.897 20 C -0.017 4.017 21 O -0.374 6.374 22 C -0.193 4.193 23 C -0.016 4.016 24 O -0.303 6.303 25 C -0.009 4.009 26 C -0.206 4.206 27 C -0.065 4.065 28 C -0.227 4.227 29 H 0.080 0.920 30 H 0.140 0.860 31 H 0.116 0.884 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.227 0.773 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.225 0.775 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.067 0.933 42 H 0.113 0.887 43 H 0.070 0.930 44 H 0.095 0.905 45 H 0.120 0.880 46 H 0.127 0.873 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 14.557 -13.088 9.016 21.552 hybrid contribution 0.870 1.115 -0.371 1.462 sum 15.427 -11.972 8.645 21.356 Atomic orbital electron populations 1.70029 1.05996 1.27600 1.45838 1.25310 0.95831 0.98857 0.96580 0.85656 0.79140 0.80404 0.78284 1.19117 1.20087 1.20132 1.21394 0.91819 0.80837 1.52387 0.89032 1.83919 1.34664 1.11675 1.77449 1.19532 0.90283 0.87704 0.90983 1.20931 0.94168 0.98577 1.12398 1.20551 0.97597 0.91097 0.91489 1.18272 0.93671 0.91991 1.14394 1.22317 0.89779 0.94415 0.93137 1.22647 1.05318 1.02891 0.97318 1.18383 0.81119 0.84614 0.82188 1.90921 1.35844 1.36633 1.75295 1.45924 1.32717 1.28803 1.29869 1.20194 0.94974 0.87479 0.87083 1.22634 0.91097 0.95439 0.92532 1.86370 1.51272 1.39814 1.59914 1.22465 0.98185 0.99342 0.99276 1.22600 0.88055 0.95727 0.95238 1.87927 1.14120 1.93662 1.34584 1.22515 0.87330 0.95952 0.95133 1.22576 0.99831 0.98833 0.99371 1.20610 0.92572 0.96589 0.96773 1.19990 0.99723 0.90016 1.12973 0.92028 0.86036 0.88417 0.86199 0.86400 0.77292 0.90290 0.93627 0.77495 0.89522 0.89810 0.88755 0.93337 0.88750 0.92996 0.90463 0.87978 0.87284 0.86745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.34 13.67 55.48 0.76 -24.58 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 20.57 29.55 -169.99 -5.02 15.55 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.39 -10.96 9.43 30.91 0.29 -10.66 16 8 H 0.09 2.41 5.28 -52.49 -0.28 2.13 16 9 O -0.17 -5.07 9.74 0.76 0.01 -5.06 16 10 C 0.17 4.23 6.66 -38.88 -0.26 3.97 16 11 C -0.24 -5.48 9.11 -39.46 -0.36 -5.84 16 12 C 0.01 0.22 6.68 -39.14 -0.26 -0.04 16 13 C -0.18 -3.27 4.42 -105.02 -0.46 -3.73 16 14 C 0.02 0.32 9.78 -37.19 -0.36 -0.05 16 15 C -0.26 -3.26 9.93 -37.50 -0.37 -3.63 16 16 C 0.55 7.73 6.29 -13.04 -0.08 7.64 16 17 O -0.51 -9.09 8.63 5.17 0.04 -9.05 16 18 N -0.72 -8.03 4.03 -48.86 -0.20 -8.23 16 19 C 0.19 2.12 0.44 -131.64 -0.06 2.06 16 20 C 0.06 0.78 5.56 37.16 0.21 0.98 16 21 O -0.57 -6.82 13.04 -35.23 -0.46 -7.28 16 22 C -0.15 -1.39 4.86 -26.50 -0.13 -1.51 16 23 C 0.06 0.51 6.67 37.30 0.25 0.75 16 24 O -0.38 -4.17 10.77 -35.23 -0.38 -4.55 16 25 C 0.07 0.72 6.68 37.20 0.25 0.97 16 26 C -0.17 -1.99 4.82 -26.59 -0.13 -2.12 16 27 C -0.05 -0.88 9.78 -39.14 -0.38 -1.26 16 28 C -0.21 -4.56 9.97 -39.47 -0.39 -4.96 16 29 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.12 2.78 5.70 -52.48 -0.30 2.48 16 31 H 0.10 1.80 7.29 -52.49 -0.38 1.42 16 32 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 33 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.39 3.50 7.37 -40.82 -0.30 3.20 16 35 H 0.08 1.26 6.21 -51.93 -0.32 0.94 16 36 H 0.05 0.52 8.14 -51.92 -0.42 0.09 16 37 H 0.38 3.45 9.12 45.56 0.42 3.86 16 38 H 0.09 0.75 7.93 -51.93 -0.41 0.34 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.05 0.36 7.01 -51.92 -0.36 -0.01 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.05 0.56 7.75 -51.93 -0.40 0.16 16 44 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.10 1.50 6.29 -51.93 -0.33 1.17 16 46 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 47 H 0.11 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 378.53 15.07 5.70 5.70 Total: -1.00 -33.62 378.53 -7.51 -41.13 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -5.61 Total: 12.81 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -2.35 Total: -16.45 kcal Atomic # 7 Polarization: -33.36 SS G_CDS: 0.56 Total: -32.80 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.79 Total: -25.94 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.62 -7.51 -41.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492471767.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.942 kcal (2) G-P(sol) polarization free energy of solvation -33.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds