Wall clock time and date at job start Wed Apr 1 2020 04:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31501 * 1 3 3 Si 1.86801 * 120.00102 * 2 1 4 4 H 1.48501 * 109.46993 * 269.99961 * 3 2 1 5 5 H 1.48502 * 109.46947 * 29.99735 * 3 2 1 6 6 H 1.48497 * 109.47159 * 150.00151 * 3 2 1 7 7 C 1.38721 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00191 * 180.02562 * 7 2 1 9 9 O 1.34788 * 119.99846 * 359.97438 * 7 2 1 10 10 C 1.35569 * 116.99782 * 185.29827 * 9 7 2 11 11 C 1.39177 * 119.90121 * 5.78799 * 10 9 7 12 12 C 1.37599 * 120.10391 * 179.70752 * 11 10 9 13 13 C 1.40027 * 119.89431 * 0.27074 * 12 11 10 14 14 C 1.46958 * 120.09832 * 179.97438 * 13 12 11 15 15 C 1.35022 * 120.00111 * 43.46464 * 14 13 12 16 16 C 1.46250 * 119.99761 * 11.38159 * 15 14 13 17 17 O 1.21721 * 120.00251 * 6.78689 * 16 15 14 18 18 N 1.34778 * 120.00020 * 186.78461 * 16 15 14 19 19 C 1.46499 * 119.99944 * 179.97438 * 18 16 15 20 20 C 1.53001 * 109.47046 * 180.02562 * 19 18 16 21 21 O 1.42901 * 109.54587 * 64.99554 * 20 19 18 22 22 C 1.53179 * 109.54199 * 304.82422 * 20 19 18 23 23 C 1.53104 * 109.15951 * 183.24494 * 22 20 19 24 24 O 1.42903 * 109.49009 * 57.46669 * 23 22 20 25 25 C 1.42897 * 114.09802 * 298.89420 * 24 23 22 26 26 C 1.53095 * 109.41474 * 61.15649 * 25 24 23 27 27 C 1.40024 * 119.79833 * 0.02562 * 13 12 11 28 28 C 1.37599 * 119.90024 * 359.97438 * 27 13 12 29 29 H 0.96999 * 120.00094 * 0.02562 * 1 2 3 30 30 H 1.08000 * 119.94713 * 359.97438 * 11 10 9 31 31 H 1.07993 * 120.05313 * 180.29465 * 12 11 10 32 32 H 1.08005 * 119.99859 * 223.46304 * 14 13 12 33 33 H 1.07993 * 119.99962 * 191.37636 * 15 14 13 34 34 H 0.96997 * 119.99765 * 0.02562 * 18 16 15 35 35 H 1.08999 * 109.47154 * 299.99986 * 19 18 16 36 36 H 1.08998 * 109.47359 * 60.00550 * 19 18 16 37 37 H 0.96696 * 114.00127 * 300.00811 * 21 20 19 38 38 H 1.09002 * 109.52329 * 303.05686 * 22 20 19 39 39 H 1.09000 * 109.52753 * 63.24505 * 22 20 19 40 40 H 1.09003 * 109.40017 * 297.48968 * 23 22 20 41 41 H 1.09002 * 109.49518 * 177.50731 * 23 22 20 42 42 H 1.08989 * 109.48414 * 301.17125 * 25 24 23 43 43 H 1.09004 * 109.49023 * 181.13915 * 25 24 23 44 44 H 1.09000 * 109.51951 * 182.48072 * 26 25 24 45 45 H 1.09001 * 109.57511 * 62.32611 * 26 25 24 46 46 H 1.08012 * 120.04939 * 179.97438 * 27 13 12 47 47 H 1.08000 * 119.94710 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0087 -1.2013 -0.0005 8 1 3.0886 -1.2013 -0.0001 9 8 1.3347 -2.3686 -0.0005 10 6 2.0687 -3.5030 0.1105 11 6 3.4393 -3.4230 0.3385 12 6 4.1873 -4.5718 0.4579 13 6 3.5683 -5.8226 0.3439 14 6 4.3630 -7.0524 0.4700 15 6 5.2930 -7.1584 1.4431 16 6 5.3431 -6.1676 2.5177 17 8 4.4736 -5.3204 2.6055 18 7 6.3521 -6.1928 3.4110 19 6 6.4025 -5.2000 4.4871 20 6 7.6387 -5.4495 5.3535 21 8 8.8185 -5.2264 4.5788 22 6 7.6251 -6.8944 5.8617 23 6 8.8213 -7.1111 6.7923 24 8 8.7643 -6.1725 7.8685 25 6 8.8225 -4.8061 7.4545 26 6 7.6250 -4.4962 6.5524 27 6 2.1901 -5.8981 0.1082 28 6 1.4502 -4.7440 -0.0097 29 1 -0.4850 0.8400 -0.0004 30 1 3.9158 -2.4578 0.4262 31 1 5.2500 -4.5088 0.6395 32 1 4.2030 -7.8714 -0.2156 33 1 5.9998 -7.9747 1.4278 34 1 7.0451 -6.8677 3.3409 35 1 6.4568 -4.2001 4.0567 36 1 5.5056 -5.2833 5.1007 37 1 8.8940 -5.7991 3.8034 38 1 6.7010 -7.0793 6.4094 39 1 7.6913 -7.5787 5.0158 40 1 9.7459 -6.9672 6.2331 41 1 8.7924 -8.1247 7.1921 42 1 9.7469 -4.6320 6.9041 43 1 8.7941 -4.1590 8.3313 44 1 7.6912 -3.4668 6.2001 45 1 6.7004 -4.6303 7.1139 46 1 1.7085 -6.8608 0.0192 47 1 0.3871 -4.8013 -0.1910 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492706279.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:09 Heat of formation + Delta-G solvation = -105.629722 kcal Electronic energy + Delta-G solvation = -30176.015304 eV Core-core repulsion = 25904.462230 eV Total energy + Delta-G solvation = -4271.553074 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.63655 -39.56937 -38.68451 -37.25030 -36.42198 -34.31755 -33.08953 -32.48305 -32.10961 -31.54347 -30.09643 -28.63572 -27.35652 -25.34542 -24.23676 -23.80875 -22.48080 -21.73307 -20.94699 -20.56140 -19.41207 -17.99866 -17.50761 -17.08272 -16.75370 -16.51669 -16.24429 -15.85276 -15.38333 -15.16643 -14.75935 -14.69123 -14.47112 -14.11761 -13.96402 -13.67914 -13.48510 -13.42723 -13.31942 -12.86078 -12.76395 -12.67994 -12.52241 -12.32005 -12.17954 -11.74747 -11.69037 -11.39073 -11.27881 -10.98977 -10.84835 -10.76359 -10.62489 -10.47693 -10.42870 -9.81887 -9.56866 -9.39910 -9.23317 -9.08364 -8.70319 -7.93233 -6.89454 -6.47004 -4.02231 1.20155 2.40137 2.68446 3.13414 3.14314 3.15762 3.18886 3.50254 3.56916 3.71290 3.96610 4.18973 4.21990 4.33213 4.57284 4.68089 4.84022 4.96275 5.05651 5.11536 5.13009 5.14996 5.18769 5.28136 5.29804 5.35085 5.39985 5.54272 5.55338 5.62889 5.71172 5.73840 5.80516 5.83993 6.23359 6.27471 6.34858 6.42310 6.59215 6.76261 6.81993 7.02114 7.11463 7.14267 7.31257 7.44135 7.49777 7.54556 7.90748 7.99774 8.46582 8.98836 9.70121 10.70855 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011068 B = 0.002539 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.267309 B =11026.945605 C =12991.919266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.389 4.389 8 H 0.093 0.907 9 O -0.172 6.172 10 C 0.171 3.829 11 C -0.243 4.243 12 C 0.017 3.983 13 C -0.193 4.193 14 C 0.031 3.969 15 C -0.271 4.271 16 C 0.539 3.461 17 O -0.507 6.507 18 N -0.739 5.739 19 C 0.098 3.902 20 C 0.124 3.876 21 O -0.552 6.552 22 C -0.182 4.182 23 C 0.065 3.935 24 O -0.384 6.384 25 C 0.065 3.935 26 C -0.141 4.141 27 C -0.044 4.044 28 C -0.210 4.210 29 H 0.271 0.729 30 H 0.124 0.876 31 H 0.096 0.904 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.390 0.610 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.375 0.625 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.056 0.944 41 H 0.093 0.907 42 H 0.060 0.940 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.110 0.890 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.305 -15.383 9.587 25.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.465 4.465 8 H 0.110 0.890 9 O -0.074 6.074 10 C 0.116 3.884 11 C -0.263 4.263 12 C -0.002 4.002 13 C -0.194 4.194 14 C 0.012 3.988 15 C -0.292 4.292 16 C 0.329 3.671 17 O -0.382 6.382 18 N -0.394 5.394 19 C -0.027 4.027 20 C 0.083 3.917 21 O -0.358 6.358 22 C -0.220 4.220 23 C -0.011 4.011 24 O -0.303 6.303 25 C -0.012 4.012 26 C -0.179 4.179 27 C -0.062 4.062 28 C -0.230 4.230 29 H 0.081 0.919 30 H 0.142 0.858 31 H 0.114 0.886 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.224 0.776 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.223 0.777 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.078 0.922 43 H 0.113 0.887 44 H 0.105 0.895 45 H 0.107 0.893 46 H 0.128 0.872 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 17.297 -14.103 10.299 24.580 hybrid contribution 0.722 0.045 -0.660 0.979 sum 18.019 -14.059 9.639 24.804 Atomic orbital electron populations 1.70016 1.06030 1.27796 1.45533 1.25323 0.95843 0.98914 0.96458 0.85704 0.78991 0.79968 0.78756 1.19802 1.20191 1.19128 1.21388 0.91895 0.80795 1.52416 0.88953 1.83918 1.34665 1.11692 1.77108 1.19552 0.90273 0.87718 0.90809 1.20959 0.94154 0.98718 1.12435 1.20544 0.97590 0.91178 0.90854 1.18288 0.93744 0.92007 1.15393 1.22346 0.89636 0.94564 0.92275 1.22547 1.05504 1.02772 0.98388 1.18506 0.81300 0.84924 0.82326 1.91016 1.37001 1.36879 1.73324 1.45968 1.28283 1.34295 1.30815 1.21955 0.97925 0.93529 0.89249 1.21459 0.84621 0.94586 0.91070 1.86575 1.42328 1.64650 1.42209 1.22875 1.01339 0.96884 1.00862 1.22489 0.96776 0.93177 0.88701 1.87927 1.94667 1.15506 1.32167 1.22524 0.97204 0.82873 0.98575 1.22149 1.00834 1.00100 0.94817 1.20631 0.92545 0.96648 0.96422 1.19999 0.99813 0.89983 1.13164 0.91925 0.85844 0.88576 0.86026 0.86225 0.77563 0.90394 0.90635 0.77730 0.89643 0.90540 0.92586 0.88914 0.92197 0.88674 0.89472 0.89295 0.87162 0.86623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 2 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 3 Si 0.94 20.86 29.55 -169.99 -5.02 15.84 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.39 -11.14 9.44 30.91 0.29 -10.85 16 8 H 0.09 2.48 5.27 -52.49 -0.28 2.20 16 9 O -0.17 -5.05 9.74 0.73 0.01 -5.04 16 10 C 0.17 4.36 6.66 -38.88 -0.26 4.10 16 11 C -0.24 -5.71 9.11 -39.47 -0.36 -6.07 16 12 C 0.02 0.34 6.60 -39.14 -0.26 0.08 16 13 C -0.19 -3.53 4.54 -105.03 -0.48 -4.00 16 14 C 0.03 0.43 9.80 -37.19 -0.36 0.06 16 15 C -0.27 -3.23 9.90 -37.51 -0.37 -3.60 16 16 C 0.54 7.62 6.77 -13.04 -0.09 7.53 16 17 O -0.51 -9.79 12.17 5.17 0.06 -9.72 16 18 N -0.74 -7.32 5.04 -61.76 -0.31 -7.63 16 19 C 0.10 1.02 4.85 -4.04 -0.02 1.00 16 20 C 0.12 0.99 0.72 -90.44 -0.07 0.92 16 21 O -0.55 -4.44 11.95 -35.23 -0.42 -4.86 16 22 C -0.18 -1.20 4.84 -26.58 -0.13 -1.33 16 23 C 0.07 0.46 6.69 37.21 0.25 0.71 16 24 O -0.38 -3.59 10.77 -35.23 -0.38 -3.96 16 25 C 0.06 0.52 6.69 37.21 0.25 0.77 16 26 C -0.14 -1.16 5.15 -26.59 -0.14 -1.29 16 27 C -0.04 -0.83 9.78 -39.15 -0.38 -1.21 16 28 C -0.21 -4.68 9.97 -39.47 -0.39 -5.07 16 29 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 30 H 0.12 2.93 5.69 -52.49 -0.30 2.63 16 31 H 0.10 1.80 7.01 -52.49 -0.37 1.43 16 32 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 33 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 34 H 0.39 2.50 6.39 -40.82 -0.26 2.24 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.38 1.95 8.20 45.56 0.37 2.33 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.37 6.71 -51.93 -0.35 0.02 16 40 H 0.06 0.38 7.82 -51.93 -0.41 -0.03 16 41 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.50 7.82 -51.94 -0.41 0.09 16 43 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 47 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 LS Contribution 383.69 15.07 5.78 5.78 Total: -1.00 -35.29 383.69 -7.91 -43.20 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -5.78 Total: 8.39 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -2.61 Total: -17.25 kcal Atomic # 7 Polarization: -32.83 SS G_CDS: 0.45 Total: -32.38 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.73 Total: -23.59 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.29 -7.91 -43.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492706279.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.425 kcal (2) G-P(sol) polarization free energy of solvation -35.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds