Wall clock time and date at job start Wed Apr 1 2020 04:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31501 * 1 3 3 Si 1.86801 * 120.00102 * 2 1 4 4 H 1.48501 * 109.46993 * 269.99961 * 3 2 1 5 5 H 1.48502 * 109.46947 * 29.99735 * 3 2 1 6 6 H 1.48497 * 109.47159 * 150.00151 * 3 2 1 7 7 C 1.38721 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00191 * 180.02562 * 7 2 1 9 9 O 1.34788 * 119.99846 * 359.97438 * 7 2 1 10 10 C 1.35569 * 116.99782 * 185.29827 * 9 7 2 11 11 C 1.39177 * 119.90121 * 5.78799 * 10 9 7 12 12 C 1.37599 * 120.10391 * 179.70752 * 11 10 9 13 13 C 1.40027 * 119.89431 * 0.27074 * 12 11 10 14 14 C 1.46958 * 120.09832 * 179.97438 * 13 12 11 15 15 C 1.35022 * 120.00111 * 43.46464 * 14 13 12 16 16 C 1.46250 * 119.99761 * 11.38159 * 15 14 13 17 17 O 1.21721 * 120.00251 * 6.78689 * 16 15 14 18 18 N 1.34778 * 120.00020 * 186.78461 * 16 15 14 19 19 C 1.46499 * 119.99944 * 179.97438 * 18 16 15 20 20 C 1.53001 * 109.47046 * 180.02562 * 19 18 16 21 21 O 1.42901 * 109.54587 * 64.99554 * 20 19 18 22 22 C 1.53179 * 109.54199 * 304.82422 * 20 19 18 23 23 C 1.53104 * 109.15951 * 183.24494 * 22 20 19 24 24 O 1.42903 * 109.49009 * 57.46669 * 23 22 20 25 25 C 1.42897 * 114.09802 * 298.89420 * 24 23 22 26 26 C 1.53095 * 109.41474 * 61.15649 * 25 24 23 27 27 C 1.40024 * 119.79833 * 0.02562 * 13 12 11 28 28 C 1.37599 * 119.90024 * 359.97438 * 27 13 12 29 29 H 0.96999 * 120.00094 * 0.02562 * 1 2 3 30 30 H 1.08000 * 119.94713 * 359.97438 * 11 10 9 31 31 H 1.07993 * 120.05313 * 180.29465 * 12 11 10 32 32 H 1.08005 * 119.99859 * 223.46304 * 14 13 12 33 33 H 1.07993 * 119.99962 * 191.37636 * 15 14 13 34 34 H 0.96997 * 119.99765 * 0.02562 * 18 16 15 35 35 H 1.08999 * 109.47154 * 299.99986 * 19 18 16 36 36 H 1.08998 * 109.47359 * 60.00550 * 19 18 16 37 37 H 0.96696 * 114.00127 * 300.00811 * 21 20 19 38 38 H 1.09002 * 109.52329 * 303.05686 * 22 20 19 39 39 H 1.09000 * 109.52753 * 63.24505 * 22 20 19 40 40 H 1.09003 * 109.40017 * 297.48968 * 23 22 20 41 41 H 1.09002 * 109.49518 * 177.50731 * 23 22 20 42 42 H 1.08989 * 109.48414 * 301.17125 * 25 24 23 43 43 H 1.09004 * 109.49023 * 181.13915 * 25 24 23 44 44 H 1.09000 * 109.51951 * 182.48072 * 26 25 24 45 45 H 1.09001 * 109.57511 * 62.32611 * 26 25 24 46 46 H 1.08012 * 120.04939 * 179.97438 * 27 13 12 47 47 H 1.08000 * 119.94710 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0087 -1.2013 -0.0005 8 1 3.0886 -1.2013 -0.0001 9 8 1.3347 -2.3686 -0.0005 10 6 2.0687 -3.5030 0.1105 11 6 3.4393 -3.4230 0.3385 12 6 4.1873 -4.5718 0.4579 13 6 3.5683 -5.8226 0.3439 14 6 4.3630 -7.0524 0.4700 15 6 5.2930 -7.1584 1.4431 16 6 5.3431 -6.1676 2.5177 17 8 4.4736 -5.3204 2.6055 18 7 6.3521 -6.1928 3.4110 19 6 6.4025 -5.2000 4.4871 20 6 7.6387 -5.4495 5.3535 21 8 8.8185 -5.2264 4.5788 22 6 7.6251 -6.8944 5.8617 23 6 8.8213 -7.1111 6.7923 24 8 8.7643 -6.1725 7.8685 25 6 8.8225 -4.8061 7.4545 26 6 7.6250 -4.4962 6.5524 27 6 2.1901 -5.8981 0.1082 28 6 1.4502 -4.7440 -0.0097 29 1 -0.4850 0.8400 -0.0004 30 1 3.9158 -2.4578 0.4262 31 1 5.2500 -4.5088 0.6395 32 1 4.2030 -7.8714 -0.2156 33 1 5.9998 -7.9747 1.4278 34 1 7.0451 -6.8677 3.3409 35 1 6.4568 -4.2001 4.0567 36 1 5.5056 -5.2833 5.1007 37 1 8.8940 -5.7991 3.8034 38 1 6.7010 -7.0793 6.4094 39 1 7.6913 -7.5787 5.0158 40 1 9.7459 -6.9672 6.2331 41 1 8.7924 -8.1247 7.1921 42 1 9.7469 -4.6320 6.9041 43 1 8.7941 -4.1590 8.3313 44 1 7.6912 -3.4668 6.2001 45 1 6.7004 -4.6303 7.1139 46 1 1.7085 -6.8608 0.0192 47 1 0.3871 -4.8013 -0.1910 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492706279.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:08 Heat of formation + Delta-G solvation = -133.386045 kcal Electronic energy + Delta-G solvation = -30177.218909 eV Core-core repulsion = 25904.462230 eV Total energy + Delta-G solvation = -4272.756679 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.46970 -40.86268 -40.19748 -38.32876 -37.74792 -35.31135 -34.60829 -33.94434 -33.17644 -32.12761 -31.78964 -29.99403 -28.45126 -27.30655 -25.04276 -24.64014 -23.69144 -23.33320 -22.27246 -21.21864 -20.54803 -19.89166 -19.06667 -18.18825 -17.69364 -17.37475 -16.96254 -16.77832 -16.54272 -16.24762 -16.15887 -15.91550 -15.74927 -15.56151 -15.25426 -15.14616 -14.82929 -14.59168 -14.31472 -14.12025 -13.95188 -13.93085 -13.56978 -13.51357 -13.28170 -13.01600 -12.94551 -12.61687 -12.41082 -12.33371 -12.25123 -12.15282 -11.97245 -11.47941 -11.27132 -11.09037 -10.99799 -10.71755 -10.44983 -10.41237 -10.11067 -9.57890 -8.57055 -8.51515 -6.17742 -0.01487 0.70764 1.11805 1.30337 1.42304 1.48491 2.14636 2.23211 2.46018 2.84680 2.93476 3.09719 3.21311 3.48088 3.50443 3.58372 3.69978 3.95485 4.00617 4.04818 4.11938 4.19448 4.27733 4.36152 4.47063 4.55042 4.56538 4.61880 4.64169 4.66984 4.73086 4.76566 4.84240 5.00168 5.02671 5.04824 5.08297 5.18824 5.19862 5.34415 5.40748 5.42538 5.66305 5.72252 5.84704 6.00233 6.23496 6.24759 6.61594 6.67285 6.93056 7.40758 7.74589 8.71961 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011068 B = 0.002539 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.267309 B =11026.945605 C =12991.919266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.022 4.022 3 Si 1.019 2.981 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.415 4.415 8 H 0.095 0.905 9 O -0.229 6.229 10 C 0.126 3.874 11 C -0.258 4.258 12 C 0.013 3.987 13 C -0.162 4.162 14 C 0.006 3.994 15 C -0.231 4.231 16 C 0.525 3.475 17 O -0.568 6.568 18 N -0.713 5.713 19 C 0.102 3.898 20 C 0.135 3.865 21 O -0.560 6.560 22 C -0.175 4.175 23 C 0.061 3.939 24 O -0.403 6.403 25 C 0.068 3.932 26 C -0.147 4.147 27 C -0.045 4.045 28 C -0.223 4.223 29 H 0.274 0.726 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.172 0.828 33 H 0.178 0.822 34 H 0.413 0.587 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.389 0.611 38 H 0.077 0.923 39 H 0.102 0.898 40 H 0.062 0.938 41 H 0.108 0.892 42 H 0.058 0.942 43 H 0.104 0.896 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.157 0.843 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.970 -19.432 9.871 30.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.219 4.219 3 Si 0.837 3.163 4 H -0.183 1.183 5 H -0.192 1.192 6 H -0.182 1.182 7 C -0.491 4.491 8 H 0.113 0.887 9 O -0.135 6.135 10 C 0.075 3.925 11 C -0.277 4.277 12 C -0.006 4.006 13 C -0.163 4.163 14 C -0.013 4.013 15 C -0.251 4.251 16 C 0.316 3.684 17 O -0.448 6.448 18 N -0.368 5.368 19 C -0.023 4.023 20 C 0.094 3.906 21 O -0.368 6.368 22 C -0.213 4.213 23 C -0.016 4.016 24 O -0.323 6.323 25 C -0.009 4.009 26 C -0.185 4.185 27 C -0.063 4.063 28 C -0.242 4.242 29 H 0.083 0.917 30 H 0.124 0.876 31 H 0.129 0.871 32 H 0.189 0.811 33 H 0.196 0.804 34 H 0.252 0.748 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.238 0.762 38 H 0.096 0.904 39 H 0.120 0.880 40 H 0.080 0.920 41 H 0.126 0.874 42 H 0.076 0.924 43 H 0.122 0.878 44 H 0.099 0.901 45 H 0.105 0.895 46 H 0.174 0.826 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 21.053 -18.256 10.588 29.809 hybrid contribution -0.118 0.812 -0.596 1.014 sum 20.934 -17.444 9.992 29.024 Atomic orbital electron populations 1.70155 1.07995 1.28921 1.48546 1.26612 0.96899 1.02692 0.95722 0.84600 0.77654 0.74508 0.79490 1.18319 1.19159 1.18165 1.21785 0.92309 0.81595 1.53393 0.88728 1.83877 1.35999 1.12691 1.80930 1.20086 0.91332 0.87951 0.93160 1.20989 0.93868 0.99448 1.13404 1.20740 0.98139 0.91148 0.90527 1.18903 0.93989 0.93510 1.09890 1.22610 0.89758 0.93823 0.95083 1.23054 1.04100 1.02259 0.95728 1.19188 0.81142 0.84734 0.83320 1.91029 1.39533 1.39413 1.74790 1.45725 1.27634 1.34055 1.29353 1.21869 0.98768 0.92410 0.89281 1.21288 0.83346 0.95674 0.90324 1.86576 1.41830 1.65392 1.42955 1.22840 1.00942 0.95901 1.01620 1.22667 0.97000 0.93462 0.88421 1.87906 1.94726 1.16084 1.33541 1.22531 0.96701 0.82820 0.98846 1.22189 1.01069 0.99991 0.95222 1.21140 0.92911 0.97152 0.95112 1.20315 1.00308 0.90249 1.13333 0.91670 0.87631 0.87077 0.81085 0.80443 0.74844 0.93141 0.92152 0.76155 0.90406 0.87966 0.92016 0.87361 0.92417 0.87774 0.90131 0.89490 0.82553 0.86815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.42 13.67 21.62 0.30 -58.12 16 2 C -0.02 -1.29 5.49 84.86 0.47 -0.82 16 3 Si 1.02 45.00 29.55 68.60 2.03 47.03 16 4 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 6 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 7 C -0.41 -25.77 9.44 67.94 0.64 -25.13 16 8 H 0.10 5.53 5.27 -2.91 -0.02 5.51 16 9 O -0.23 -14.72 9.74 -20.32 -0.20 -14.92 16 10 C 0.13 6.86 6.66 22.72 0.15 7.01 16 11 C -0.26 -12.80 9.11 22.34 0.20 -12.60 16 12 C 0.01 0.51 6.60 22.55 0.15 0.66 16 13 C -0.16 -5.48 4.54 -20.13 -0.09 -5.57 16 14 C 0.01 0.14 9.80 23.82 0.23 0.37 16 15 C -0.23 -3.98 9.90 23.61 0.23 -3.75 16 16 C 0.53 12.93 6.77 86.32 0.58 13.51 16 17 O -0.57 -21.30 12.17 -4.42 -0.05 -21.36 16 18 N -0.71 -11.50 5.04 -467.51 -2.36 -13.86 16 19 C 0.10 2.00 4.85 86.38 0.42 2.42 16 20 C 0.13 1.89 0.72 -10.68 -0.01 1.88 16 21 O -0.56 -7.49 11.95 -148.98 -1.78 -9.27 16 22 C -0.18 -1.75 4.84 30.69 0.15 -1.60 16 23 C 0.06 0.67 6.69 72.02 0.48 1.15 16 24 O -0.40 -6.78 10.77 -148.98 -1.60 -8.38 16 25 C 0.07 1.00 6.69 72.01 0.48 1.49 16 26 C -0.15 -2.31 5.15 30.68 0.16 -2.15 16 27 C -0.05 -1.62 9.78 22.55 0.22 -1.40 16 28 C -0.22 -10.29 9.97 22.34 0.22 -10.06 16 29 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 30 H 0.11 5.46 5.69 -2.91 -0.02 5.44 16 31 H 0.11 4.04 7.01 -2.91 -0.02 4.02 16 32 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 33 H 0.18 1.17 8.06 -2.91 -0.02 1.15 16 34 H 0.41 2.96 6.39 -92.71 -0.59 2.37 16 35 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.39 2.50 8.20 -74.06 -0.61 1.90 16 38 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.10 0.46 6.71 -2.39 -0.02 0.45 16 40 H 0.06 0.62 7.82 -2.39 -0.02 0.60 16 41 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.06 0.88 7.82 -2.39 -0.02 0.86 16 43 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.16 4.13 8.06 -2.90 -0.02 4.10 16 47 H 0.11 5.13 8.06 -2.91 -0.02 5.10 16 Total: -1.00 -87.82 383.69 0.84 -86.98 By element: Atomic # 1 Polarization: 26.68 SS G_CDS: -0.18 Total: 26.50 kcal Atomic # 6 Polarization: -39.29 SS G_CDS: 4.70 Total: -34.59 kcal Atomic # 7 Polarization: -69.92 SS G_CDS: -2.06 Total: -71.98 kcal Atomic # 8 Polarization: -50.30 SS G_CDS: -3.64 Total: -53.93 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -87.82 0.84 -86.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492706279.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.407 kcal (2) G-P(sol) polarization free energy of solvation -87.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds