Wall clock time and date at job start Wed Apr 1 2020 04:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86796 * 120.00270 * 2 1 4 4 H 1.48503 * 109.47114 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47012 * 299.99789 * 3 2 1 6 6 H 1.48495 * 109.46919 * 59.99928 * 3 2 1 7 7 C 1.38719 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00291 * 179.97438 * 7 2 1 9 9 O 1.34782 * 119.99836 * 0.02562 * 7 2 1 10 10 C 1.35575 * 116.99724 * 185.05937 * 9 7 2 11 11 C 1.39167 * 119.89985 * 354.36468 * 10 9 7 12 12 C 1.37605 * 120.10172 * 180.02562 * 11 10 9 13 13 C 1.40015 * 119.89754 * 0.02562 * 12 11 10 14 14 C 1.46966 * 120.10309 * 179.97438 * 13 12 11 15 15 C 1.35026 * 119.99651 * 136.67773 * 14 13 12 16 16 C 1.46254 * 120.00454 * 348.69093 * 15 14 13 17 17 O 1.21722 * 119.99624 * 353.21542 * 16 15 14 18 18 N 1.34768 * 119.99931 * 173.20860 * 16 15 14 19 19 C 1.46500 * 119.99928 * 180.02562 * 18 16 15 20 20 C 1.52999 * 109.47323 * 180.02562 * 19 18 16 21 21 H 1.09003 * 109.86676 * 59.30047 * 20 19 18 22 22 C 1.54100 * 109.87760 * 180.30464 * 20 19 18 23 23 C 1.54810 * 104.18656 * 121.60531 * 22 20 19 24 24 C 1.55002 * 102.09380 * 20.87895 * 23 22 20 25 25 H 1.08994 * 110.61319 * 81.47551 * 24 23 22 26 26 C 1.52990 * 110.61885 * 204.31953 * 24 23 22 27 27 O 1.42899 * 109.47171 * 185.00008 * 26 24 23 28 28 O 1.43737 * 109.87768 * 298.29354 * 20 19 18 29 29 C 1.40028 * 119.80026 * 0.25374 * 13 12 11 30 30 C 1.37601 * 119.89556 * 359.48502 * 29 13 12 31 31 H 0.96996 * 119.99912 * 0.02562 * 1 2 3 32 32 H 1.08003 * 119.95303 * 359.97438 * 11 10 9 33 33 H 1.08003 * 120.05055 * 180.02562 * 12 11 10 34 34 H 1.08000 * 120.00004 * 316.69007 * 14 13 12 35 35 H 1.07998 * 119.99582 * 168.68909 * 15 14 13 36 36 H 0.96999 * 120.00580 * 0.02562 * 18 16 15 37 37 H 1.09003 * 109.47392 * 60.00094 * 19 18 16 38 38 H 1.09005 * 109.47171 * 300.00045 * 19 18 16 39 39 H 1.08998 * 110.48590 * 240.27999 * 22 20 19 40 40 H 1.08999 * 110.49174 * 2.79525 * 22 20 19 41 41 H 1.09000 * 110.90644 * 139.07397 * 23 22 20 42 42 H 1.09003 * 110.90585 * 262.64731 * 23 22 20 43 43 H 1.09003 * 109.47173 * 304.99794 * 26 24 23 44 44 H 1.09000 * 109.47611 * 64.99623 * 26 24 23 45 45 H 0.96704 * 114.00146 * 179.97438 * 27 26 24 46 46 H 1.08003 * 120.05132 * 179.74812 * 29 13 12 47 47 H 1.07997 * 119.95382 * 180.23590 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0086 -1.2014 -0.0005 8 1 3.0886 -1.2015 -0.0010 9 8 1.3346 -2.3686 -0.0016 10 6 2.0689 -3.5033 0.1045 11 6 3.4587 -3.4342 0.0896 12 6 4.2081 -4.5834 0.1965 13 6 3.5700 -5.8237 0.3197 14 6 4.3659 -7.0539 0.4335 15 6 4.0210 -8.0003 1.3328 16 6 3.0188 -7.7058 2.3565 17 8 2.5861 -6.5744 2.4769 18 7 2.5742 -8.6871 3.1662 19 6 1.5699 -8.3922 4.1912 20 6 1.2421 -9.6698 4.9666 21 1 2.1453 -10.0606 5.4353 22 6 0.1803 -9.3717 6.0429 23 6 -0.9903 -10.3230 5.6947 24 6 -0.2852 -11.4057 4.8385 25 1 0.2092 -12.1379 5.4768 26 6 -1.2864 -12.0932 3.9081 27 8 -0.6375 -13.1620 3.2163 28 8 0.6885 -10.6532 4.0765 29 6 2.1713 -5.8889 0.3283 30 6 1.4302 -4.7340 0.2263 31 1 -0.4850 0.8400 -0.0004 32 1 3.9501 -2.4773 -0.0067 33 1 5.2867 -4.5288 0.1853 34 1 5.2267 -7.2010 -0.2019 35 1 4.4852 -8.9747 1.2961 36 1 2.9191 -9.5886 3.0704 37 1 0.6653 -8.0135 3.7153 38 1 1.9610 -7.6412 4.8777 39 1 0.5706 -9.5945 7.0359 40 1 -0.1404 -8.3316 5.9847 41 1 -1.4188 -10.7590 6.5972 42 1 -1.7539 -9.8042 5.1151 43 1 -2.1146 -12.4902 4.4951 44 1 -1.6666 -11.3708 3.1858 45 1 -1.2140 -13.6439 2.6076 46 1 1.6750 -6.8438 0.4191 47 1 0.3514 -4.7829 0.2367 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492797973.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:25 Heat of formation + Delta-G solvation = -104.785012 kcal Electronic energy + Delta-G solvation = -29518.908724 eV Core-core repulsion = 25247.392279 eV Total energy + Delta-G solvation = -4271.516445 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.23057 -39.47168 -38.60017 -37.01048 -36.44173 -34.55592 -32.97751 -32.59054 -32.09859 -31.19265 -30.06354 -28.33156 -27.18233 -25.39642 -24.23353 -22.59465 -21.75403 -21.66459 -21.48842 -20.80060 -19.12092 -17.88631 -17.84569 -17.18283 -16.95661 -16.56699 -16.35099 -16.05420 -15.23817 -14.79578 -14.58963 -14.45472 -14.37557 -14.10914 -13.96616 -13.67192 -13.43187 -13.23797 -13.11818 -12.88092 -12.69724 -12.36232 -12.25524 -12.12403 -12.05980 -11.73542 -11.65109 -11.49799 -11.30314 -11.08452 -10.96995 -10.63377 -10.55612 -10.46710 -10.37142 -10.00547 -9.43136 -9.35248 -9.10634 -8.87084 -8.65150 -7.86334 -6.80772 -6.42415 -3.98012 1.32327 2.47672 2.76020 3.15678 3.17163 3.21602 3.22127 3.52945 3.66036 3.73731 4.00033 4.09708 4.45339 4.47957 4.67745 4.74815 4.78593 4.82531 5.01212 5.03759 5.04353 5.14106 5.22600 5.30721 5.31131 5.35643 5.40768 5.52144 5.59536 5.66777 5.69749 5.79119 5.85605 5.91097 6.30446 6.39942 6.48345 6.52198 6.65575 6.66501 6.84931 7.09115 7.17252 7.21533 7.41925 7.51128 7.55060 7.78386 7.97669 8.04835 8.63822 9.03567 9.76352 10.75731 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.014212 B = 0.002078 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.629654 B =13468.177609 C =14407.052776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.038 3.962 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.388 4.388 8 H 0.094 0.906 9 O -0.174 6.174 10 C 0.171 3.829 11 C -0.251 4.251 12 C -0.042 4.042 13 C -0.187 4.187 14 C 0.024 3.976 15 C -0.264 4.264 16 C 0.538 3.462 17 O -0.515 6.515 18 N -0.731 5.731 19 C 0.126 3.874 20 C 0.064 3.936 21 H 0.074 0.926 22 C -0.148 4.148 23 C -0.148 4.148 24 C 0.077 3.923 25 H 0.077 0.923 26 C 0.082 3.918 27 O -0.568 6.568 28 O -0.357 6.357 29 C 0.013 3.987 30 C -0.203 4.203 31 H 0.269 0.731 32 H 0.126 0.874 33 H 0.106 0.894 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.399 0.601 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.381 0.619 46 H 0.101 0.899 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.151 -24.405 10.179 26.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.166 4.166 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.465 4.465 8 H 0.111 0.889 9 O -0.077 6.077 10 C 0.116 3.884 11 C -0.270 4.270 12 C -0.061 4.061 13 C -0.188 4.188 14 C 0.005 3.995 15 C -0.285 4.285 16 C 0.328 3.672 17 O -0.391 6.391 18 N -0.384 5.384 19 C 0.001 3.999 20 C 0.006 3.994 21 H 0.092 0.908 22 C -0.187 4.187 23 C -0.186 4.186 24 C 0.019 3.981 25 H 0.095 0.905 26 C 0.004 3.996 27 O -0.374 6.374 28 O -0.276 6.276 29 C -0.006 4.006 30 C -0.222 4.222 31 H 0.079 0.921 32 H 0.143 0.857 33 H 0.124 0.876 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.233 0.767 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.228 0.772 46 H 0.119 0.881 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.949 -23.152 10.389 25.394 hybrid contribution 0.126 0.113 0.045 0.175 sum 1.075 -23.039 10.434 25.315 Atomic orbital electron populations 1.70034 1.06012 1.27566 1.45966 1.25323 0.95845 0.98893 0.96587 0.85631 0.79192 0.80313 0.78209 1.19046 1.20150 1.20150 1.21439 0.91933 0.80808 1.52291 0.88863 1.83908 1.34749 1.11632 1.77398 1.19523 0.90260 0.87722 0.90855 1.20948 0.93657 0.98767 1.13636 1.20743 0.97874 0.91564 0.95904 1.18300 0.93017 0.92242 1.15240 1.22324 0.93968 0.91398 0.91837 1.22609 1.05014 1.00887 0.99957 1.18495 0.81935 0.84773 0.82007 1.90992 1.57422 1.20605 1.70119 1.45858 1.43704 1.12468 1.36363 1.21476 0.92816 0.94915 0.90666 1.23011 0.96700 0.89361 0.90369 0.90777 1.22909 0.95111 1.01582 0.99049 1.23094 0.98520 0.96490 1.00449 1.23191 0.89396 0.93406 0.92112 0.90531 1.22192 0.93505 0.89104 0.94831 1.86521 1.41671 1.48063 1.61115 1.89083 1.56473 1.47450 1.34626 1.20455 0.92131 0.96215 0.91760 1.20001 0.99265 0.90235 1.12694 0.92067 0.85675 0.87625 0.86096 0.86153 0.76706 0.90924 0.90441 0.90069 0.89422 0.89751 0.89912 0.92220 0.92465 0.77238 0.88083 0.86901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.83 13.67 55.48 0.76 -25.07 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 21.02 29.55 -169.99 -5.02 16.00 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.39 -11.24 9.48 30.91 0.29 -10.94 16 8 H 0.09 2.51 5.18 -52.49 -0.27 2.24 16 9 O -0.17 -5.21 9.74 0.72 0.01 -5.20 16 10 C 0.17 4.45 6.66 -38.89 -0.26 4.19 16 11 C -0.25 -5.87 9.14 -39.47 -0.36 -6.23 16 12 C -0.04 -0.85 9.78 -39.15 -0.38 -1.24 16 13 C -0.19 -3.60 4.54 -105.03 -0.48 -4.07 16 14 C 0.02 0.36 9.80 -37.19 -0.36 0.00 16 15 C -0.26 -3.59 9.90 -37.50 -0.37 -3.96 16 16 C 0.54 8.49 6.77 -13.04 -0.09 8.40 16 17 O -0.51 -10.44 12.18 5.17 0.06 -10.38 16 18 N -0.73 -9.08 5.47 -61.75 -0.34 -9.42 16 19 C 0.13 1.45 5.15 -4.04 -0.02 1.43 16 20 C 0.06 0.56 3.48 -26.16 -0.09 0.47 16 21 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 22 C -0.15 -1.00 6.64 -25.20 -0.17 -1.17 16 23 C -0.15 -0.91 6.59 -24.72 -0.16 -1.07 16 24 C 0.08 0.61 3.62 -25.68 -0.09 0.52 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 26 C 0.08 0.58 6.80 37.15 0.25 0.83 16 27 O -0.57 -4.75 13.66 -35.23 -0.48 -5.23 16 28 O -0.36 -3.79 10.76 -35.23 -0.38 -4.17 16 29 C 0.01 0.27 6.60 -39.14 -0.26 0.01 16 30 C -0.20 -4.79 9.97 -39.46 -0.39 -5.19 16 31 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.13 2.89 5.62 -52.48 -0.29 2.60 16 33 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 34 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 35 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.40 4.10 8.39 -40.82 -0.34 3.76 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.61 7.70 -51.93 -0.40 0.22 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 0.52 8.06 -51.93 -0.42 0.10 16 43 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.38 1.41 9.12 45.56 0.42 1.82 16 46 H 0.10 1.96 7.02 -52.48 -0.37 1.59 16 47 H 0.11 2.61 8.06 -52.49 -0.42 2.18 16 LS Contribution 393.54 15.07 5.93 5.93 Total: -1.00 -36.91 393.54 -8.39 -45.30 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -5.89 Total: 9.29 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -3.04 Total: -17.06 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.42 Total: -34.48 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.79 Total: -24.98 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.91 -8.39 -45.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492797973.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.482 kcal (2) G-P(sol) polarization free energy of solvation -36.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds