Wall clock time and date at job start Wed Apr 1 2020 04:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86796 * 120.00270 * 2 1 4 4 H 1.48503 * 109.47114 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47012 * 299.99789 * 3 2 1 6 6 H 1.48495 * 109.46919 * 59.99928 * 3 2 1 7 7 C 1.38719 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00291 * 179.97438 * 7 2 1 9 9 O 1.34782 * 119.99836 * 0.02562 * 7 2 1 10 10 C 1.35575 * 116.99724 * 185.05937 * 9 7 2 11 11 C 1.39167 * 119.89985 * 354.36468 * 10 9 7 12 12 C 1.37605 * 120.10172 * 180.02562 * 11 10 9 13 13 C 1.40015 * 119.89754 * 0.02562 * 12 11 10 14 14 C 1.46966 * 120.10309 * 179.97438 * 13 12 11 15 15 C 1.35026 * 119.99651 * 136.67773 * 14 13 12 16 16 C 1.46254 * 120.00454 * 348.69093 * 15 14 13 17 17 O 1.21722 * 119.99624 * 353.21542 * 16 15 14 18 18 N 1.34768 * 119.99931 * 173.20860 * 16 15 14 19 19 C 1.46500 * 119.99928 * 180.02562 * 18 16 15 20 20 C 1.52999 * 109.47323 * 180.02562 * 19 18 16 21 21 H 1.09003 * 109.86676 * 59.30047 * 20 19 18 22 22 C 1.54100 * 109.87760 * 180.30464 * 20 19 18 23 23 C 1.54810 * 104.18656 * 121.60531 * 22 20 19 24 24 C 1.55002 * 102.09380 * 20.87895 * 23 22 20 25 25 H 1.08994 * 110.61319 * 81.47551 * 24 23 22 26 26 C 1.52990 * 110.61885 * 204.31953 * 24 23 22 27 27 O 1.42899 * 109.47171 * 185.00008 * 26 24 23 28 28 O 1.43737 * 109.87768 * 298.29354 * 20 19 18 29 29 C 1.40028 * 119.80026 * 0.25374 * 13 12 11 30 30 C 1.37601 * 119.89556 * 359.48502 * 29 13 12 31 31 H 0.96996 * 119.99912 * 0.02562 * 1 2 3 32 32 H 1.08003 * 119.95303 * 359.97438 * 11 10 9 33 33 H 1.08003 * 120.05055 * 180.02562 * 12 11 10 34 34 H 1.08000 * 120.00004 * 316.69007 * 14 13 12 35 35 H 1.07998 * 119.99582 * 168.68909 * 15 14 13 36 36 H 0.96999 * 120.00580 * 0.02562 * 18 16 15 37 37 H 1.09003 * 109.47392 * 60.00094 * 19 18 16 38 38 H 1.09005 * 109.47171 * 300.00045 * 19 18 16 39 39 H 1.08998 * 110.48590 * 240.27999 * 22 20 19 40 40 H 1.08999 * 110.49174 * 2.79525 * 22 20 19 41 41 H 1.09000 * 110.90644 * 139.07397 * 23 22 20 42 42 H 1.09003 * 110.90585 * 262.64731 * 23 22 20 43 43 H 1.09003 * 109.47173 * 304.99794 * 26 24 23 44 44 H 1.09000 * 109.47611 * 64.99623 * 26 24 23 45 45 H 0.96704 * 114.00146 * 179.97438 * 27 26 24 46 46 H 1.08003 * 120.05132 * 179.74812 * 29 13 12 47 47 H 1.07997 * 119.95382 * 180.23590 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0086 -1.2014 -0.0005 8 1 3.0886 -1.2015 -0.0010 9 8 1.3346 -2.3686 -0.0016 10 6 2.0689 -3.5033 0.1045 11 6 3.4587 -3.4342 0.0896 12 6 4.2081 -4.5834 0.1965 13 6 3.5700 -5.8237 0.3197 14 6 4.3659 -7.0539 0.4335 15 6 4.0210 -8.0003 1.3328 16 6 3.0188 -7.7058 2.3565 17 8 2.5861 -6.5744 2.4769 18 7 2.5742 -8.6871 3.1662 19 6 1.5699 -8.3922 4.1912 20 6 1.2421 -9.6698 4.9666 21 1 2.1453 -10.0606 5.4353 22 6 0.1803 -9.3717 6.0429 23 6 -0.9903 -10.3230 5.6947 24 6 -0.2852 -11.4057 4.8385 25 1 0.2092 -12.1379 5.4768 26 6 -1.2864 -12.0932 3.9081 27 8 -0.6375 -13.1620 3.2163 28 8 0.6885 -10.6532 4.0765 29 6 2.1713 -5.8889 0.3283 30 6 1.4302 -4.7340 0.2263 31 1 -0.4850 0.8400 -0.0004 32 1 3.9501 -2.4773 -0.0067 33 1 5.2867 -4.5288 0.1853 34 1 5.2267 -7.2010 -0.2019 35 1 4.4852 -8.9747 1.2961 36 1 2.9191 -9.5886 3.0704 37 1 0.6653 -8.0135 3.7153 38 1 1.9610 -7.6412 4.8777 39 1 0.5706 -9.5945 7.0359 40 1 -0.1404 -8.3316 5.9847 41 1 -1.4188 -10.7590 6.5972 42 1 -1.7539 -9.8042 5.1151 43 1 -2.1146 -12.4902 4.4951 44 1 -1.6666 -11.3708 3.1858 45 1 -1.2140 -13.6439 2.6076 46 1 1.6750 -6.8438 0.4191 47 1 0.3514 -4.7829 0.2367 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492797973.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:24 Heat of formation + Delta-G solvation = -134.030093 kcal Electronic energy + Delta-G solvation = -29520.176886 eV Core-core repulsion = 25247.392279 eV Total energy + Delta-G solvation = -4272.784607 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.20861 -40.74052 -40.19179 -38.22659 -37.55320 -35.70494 -34.58978 -33.92607 -33.21273 -32.00570 -31.82542 -29.75464 -28.19659 -27.37179 -25.15445 -23.87871 -23.42528 -22.40639 -22.29288 -22.12171 -20.45280 -19.75980 -18.88289 -18.42863 -18.06601 -17.64469 -17.13741 -16.93154 -16.40278 -16.33814 -16.17154 -15.86244 -15.57751 -15.50289 -15.09433 -14.90862 -14.57951 -14.52615 -14.48532 -14.23532 -13.89882 -13.71126 -13.59655 -13.56002 -13.03833 -12.82043 -12.68646 -12.64804 -12.37919 -12.32865 -12.22684 -12.09243 -12.07251 -11.63597 -11.23890 -11.01334 -10.96697 -10.70047 -10.67541 -10.39566 -10.04312 -9.57151 -8.55954 -8.48612 -6.15894 -0.00998 0.71028 1.12195 1.33454 1.44695 1.53017 2.16957 2.31910 2.48129 2.74987 2.86806 3.18244 3.20348 3.50046 3.51814 3.79916 3.90758 4.00062 4.06816 4.11192 4.14112 4.16310 4.20363 4.25641 4.38899 4.46544 4.51308 4.54380 4.59713 4.68777 4.74656 4.76911 4.88677 4.96633 5.04782 5.07452 5.09743 5.14307 5.25254 5.26638 5.45548 5.50777 5.67536 5.72021 5.84861 5.91418 6.02409 6.24433 6.70262 6.86195 6.95220 7.43918 7.77409 8.74839 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.014212 B = 0.002078 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.629654 B =13468.177609 C =14407.052776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.025 4.025 3 Si 1.023 2.977 4 H -0.250 1.250 5 H -0.265 1.265 6 H -0.268 1.268 7 C -0.414 4.414 8 H 0.103 0.897 9 O -0.231 6.231 10 C 0.128 3.872 11 C -0.258 4.258 12 C -0.047 4.047 13 C -0.160 4.160 14 C 0.006 3.994 15 C -0.232 4.232 16 C 0.524 3.476 17 O -0.569 6.569 18 N -0.713 5.713 19 C 0.124 3.876 20 C 0.070 3.930 21 H 0.090 0.910 22 C -0.148 4.148 23 C -0.142 4.142 24 C 0.069 3.931 25 H 0.082 0.918 26 C 0.079 3.921 27 O -0.592 6.592 28 O -0.384 6.384 29 C 0.014 3.986 30 C -0.221 4.221 31 H 0.273 0.727 32 H 0.121 0.879 33 H 0.149 0.851 34 H 0.171 0.829 35 H 0.171 0.829 36 H 0.413 0.587 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.079 0.921 41 H 0.109 0.891 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.047 0.953 45 H 0.398 0.602 46 H 0.114 0.886 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.201 -27.638 11.246 30.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.223 4.223 3 Si 0.842 3.158 4 H -0.174 1.174 5 H -0.190 1.190 6 H -0.193 1.193 7 C -0.490 4.490 8 H 0.120 0.880 9 O -0.137 6.137 10 C 0.077 3.923 11 C -0.277 4.277 12 C -0.065 4.065 13 C -0.161 4.161 14 C -0.014 4.014 15 C -0.253 4.253 16 C 0.315 3.685 17 O -0.450 6.450 18 N -0.366 5.366 19 C 0.000 4.000 20 C 0.012 3.988 21 H 0.108 0.892 22 C -0.187 4.187 23 C -0.179 4.179 24 C 0.012 3.988 25 H 0.100 0.900 26 C 0.002 3.998 27 O -0.400 6.400 28 O -0.304 6.304 29 C -0.004 4.004 30 C -0.240 4.240 31 H 0.082 0.918 32 H 0.139 0.861 33 H 0.167 0.833 34 H 0.188 0.812 35 H 0.188 0.812 36 H 0.250 0.750 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.121 0.879 40 H 0.098 0.902 41 H 0.127 0.873 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.065 0.935 45 H 0.247 0.753 46 H 0.132 0.868 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.023 -26.508 11.464 29.159 hybrid contribution -0.739 0.562 -0.163 0.943 sum 3.284 -25.945 11.301 28.490 Atomic orbital electron populations 1.70184 1.08163 1.28824 1.48778 1.26694 0.96919 1.02897 0.95753 0.84477 0.78238 0.74470 0.78647 1.17351 1.19018 1.19322 1.21936 0.92632 0.81359 1.53108 0.87972 1.83878 1.36301 1.12731 1.80826 1.19985 0.91729 0.87480 0.93117 1.21095 0.92753 1.00137 1.13750 1.21187 0.99874 0.90512 0.94887 1.18868 0.92701 0.94277 1.10222 1.22583 0.95369 0.89226 0.94191 1.23055 1.02386 1.02233 0.97591 1.19121 0.82178 0.84456 0.82735 1.90996 1.59490 1.22892 1.71626 1.45786 1.42787 1.12582 1.35409 1.21517 0.91499 0.96630 0.90391 1.23000 0.97962 0.87769 0.90076 0.89207 1.22951 0.94894 1.01382 0.99430 1.23094 0.97992 0.95770 1.01092 1.23409 0.89300 0.93714 0.92392 0.90040 1.22291 0.93929 0.88787 0.94841 1.86463 1.43188 1.48521 1.61877 1.89043 1.57362 1.47968 1.36011 1.20642 0.93277 0.95477 0.91037 1.20159 0.99163 0.90972 1.13745 0.91761 0.86102 0.83288 0.81222 0.81169 0.75006 0.93439 0.90861 0.87913 0.90204 0.87285 0.90534 0.89485 0.93505 0.75251 0.86760 0.88209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.91 13.67 21.62 0.30 -58.61 16 2 C -0.03 -1.51 5.49 84.86 0.47 -1.04 16 3 Si 1.02 44.62 29.55 68.60 2.03 46.65 16 4 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 6 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.41 -25.55 9.48 67.94 0.64 -24.90 16 8 H 0.10 5.80 5.18 -2.91 -0.02 5.78 16 9 O -0.23 -15.01 9.74 -20.33 -0.20 -15.21 16 10 C 0.13 7.10 6.66 22.72 0.15 7.26 16 11 C -0.26 -12.42 9.14 22.34 0.20 -12.21 16 12 C -0.05 -1.79 9.78 22.55 0.22 -1.57 16 13 C -0.16 -5.80 4.54 -20.13 -0.09 -5.89 16 14 C 0.01 0.14 9.80 23.82 0.23 0.37 16 15 C -0.23 -5.13 9.90 23.62 0.23 -4.89 16 16 C 0.52 15.27 6.77 86.33 0.58 15.86 16 17 O -0.57 -22.84 12.18 -4.42 -0.05 -22.89 16 18 N -0.71 -16.14 5.47 -467.50 -2.56 -18.70 16 19 C 0.12 2.79 5.15 86.38 0.44 3.23 16 20 C 0.07 1.12 3.48 30.97 0.11 1.23 16 21 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 22 C -0.15 -1.76 6.64 31.58 0.21 -1.55 16 23 C -0.14 -1.47 6.59 31.90 0.21 -1.26 16 24 C 0.07 0.97 3.62 31.28 0.11 1.08 16 25 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 26 C 0.08 1.00 6.80 71.98 0.49 1.49 16 27 O -0.59 -9.00 13.66 -148.98 -2.03 -11.03 16 28 O -0.38 -7.56 10.76 -148.98 -1.60 -9.17 16 29 C 0.01 0.59 6.60 22.55 0.15 0.73 16 30 C -0.22 -11.14 9.97 22.35 0.22 -10.92 16 31 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 32 H 0.12 5.79 5.62 -2.91 -0.02 5.77 16 33 H 0.15 4.40 8.06 -2.91 -0.02 4.37 16 34 H 0.17 2.69 8.06 -2.91 -0.02 2.66 16 35 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 36 H 0.41 7.08 8.39 -92.71 -0.78 6.30 16 37 H 0.05 1.31 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.08 1.08 7.70 -2.39 -0.02 1.06 16 41 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.08 0.89 8.06 -2.39 -0.02 0.87 16 43 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.40 2.40 9.12 -74.05 -0.68 1.72 16 46 H 0.11 4.39 7.02 -2.91 -0.02 4.37 16 47 H 0.10 5.09 8.06 -2.91 -0.02 5.06 16 Total: -1.00 -89.14 393.54 0.03 -89.11 By element: Atomic # 1 Polarization: 33.30 SS G_CDS: -0.44 Total: 32.86 kcal Atomic # 6 Polarization: -37.59 SS G_CDS: 4.59 Total: -33.00 kcal Atomic # 7 Polarization: -75.05 SS G_CDS: -2.26 Total: -77.31 kcal Atomic # 8 Polarization: -54.41 SS G_CDS: -3.89 Total: -58.30 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -89.14 0.03 -89.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492797973.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.918 kcal (2) G-P(sol) polarization free energy of solvation -89.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds