Wall clock time and date at job start Wed Apr 1 2020 04:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 119.99956 * 2 1 4 4 H 1.48503 * 109.46956 * 240.00424 * 3 2 1 5 5 H 1.48499 * 109.47083 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47309 * 120.00302 * 3 2 1 7 7 C 1.38718 * 120.00341 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00083 * 179.97438 * 7 2 1 9 9 O 1.34788 * 119.99766 * 359.97438 * 7 2 1 10 10 C 1.35572 * 116.99637 * 174.96993 * 9 7 2 11 11 C 1.39170 * 119.90164 * 5.33518 * 10 9 7 12 12 C 1.37598 * 120.10545 * 180.02562 * 11 10 9 13 13 C 1.40028 * 119.89400 * 359.97438 * 12 11 10 14 14 C 1.46958 * 120.10132 * 179.97438 * 13 12 11 15 15 C 1.35020 * 120.00147 * 180.02562 * 14 13 12 16 16 C 1.46255 * 119.99948 * 180.02562 * 15 14 13 17 17 O 1.21715 * 120.00275 * 4.96528 * 16 15 14 18 18 N 1.34778 * 119.99919 * 184.96978 * 16 15 14 19 19 C 1.46938 * 120.60202 * 354.66697 * 18 16 15 20 20 C 1.53193 * 108.77107 * 233.53233 * 19 18 16 21 21 C 1.53041 * 109.33801 * 305.41674 * 20 19 18 22 22 H 1.08997 * 109.46351 * 301.34100 * 21 20 19 23 23 C 1.53007 * 109.45890 * 181.36709 * 21 20 19 24 24 O 1.42896 * 109.47041 * 64.99908 * 23 21 20 25 25 C 1.53044 * 109.53877 * 61.35239 * 21 20 19 26 26 H 1.08997 * 109.49822 * 58.61445 * 25 21 20 27 27 O 1.42896 * 109.49803 * 178.68332 * 25 21 20 28 28 C 1.46921 * 120.63348 * 174.64550 * 18 16 15 29 29 C 1.40029 * 119.79616 * 0.25865 * 13 12 11 30 30 C 1.37595 * 119.89617 * 359.48352 * 29 13 12 31 31 H 0.96997 * 120.00066 * 359.97438 * 1 2 3 32 32 H 1.08008 * 119.95037 * 0.03279 * 11 10 9 33 33 H 1.07997 * 120.05408 * 179.97438 * 12 11 10 34 34 H 1.08003 * 119.99985 * 0.02562 * 14 13 12 35 35 H 1.08003 * 119.99869 * 0.02562 * 15 14 13 36 36 H 1.09001 * 109.56122 * 113.76770 * 19 18 16 37 37 H 1.08998 * 109.61541 * 353.33948 * 19 18 16 38 38 H 1.08993 * 109.49628 * 185.44823 * 20 19 18 39 39 H 1.09002 * 109.49457 * 65.38445 * 20 19 18 40 40 H 1.08999 * 109.46923 * 185.00092 * 23 21 20 41 41 H 1.09002 * 109.46695 * 305.00254 * 23 21 20 42 42 H 0.96696 * 114.00130 * 180.02562 * 24 23 21 43 43 H 0.96695 * 114.00255 * 179.97438 * 27 25 21 44 44 H 1.09003 * 109.58274 * 6.64328 * 28 18 16 45 45 H 1.09006 * 109.58614 * 246.22423 * 28 18 16 46 46 H 1.08002 * 120.04640 * 179.74483 * 29 13 12 47 47 H 1.07999 * 119.94864 * 180.27785 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0087 -1.2013 -0.0005 8 1 3.0887 -1.2012 -0.0010 9 8 1.3348 -2.3686 -0.0005 10 6 2.0692 -3.5032 -0.1070 11 6 3.4591 -3.4334 -0.0978 12 6 4.2086 -4.5822 -0.2061 13 6 3.5707 -5.8231 -0.3252 14 6 4.3667 -7.0529 -0.4417 15 6 3.7495 -8.2482 -0.5570 16 6 4.5417 -9.4722 -0.6724 17 8 5.7539 -9.4241 -0.5739 18 7 3.9295 -10.6534 -0.8879 19 6 2.4630 -10.7459 -0.8929 20 6 2.0345 -11.8367 0.0936 21 6 2.7487 -13.1445 -0.2553 22 1 2.5013 -13.4320 -1.2771 23 6 2.2968 -14.2446 0.7074 24 8 0.9064 -14.5087 0.5099 25 6 4.2618 -12.9499 -0.1328 26 1 4.5075 -12.6388 0.8825 27 8 4.9264 -14.1797 -0.4289 28 6 4.7156 -11.8722 -1.1225 29 6 2.1720 -5.8879 -0.3389 30 6 1.4308 -4.7342 -0.2247 31 1 -0.4850 0.8400 0.0004 32 1 3.9504 -2.4759 -0.0053 33 1 5.2872 -4.5271 -0.1993 34 1 5.4454 -7.0006 -0.4352 35 1 2.6707 -8.3005 -0.5639 36 1 2.1170 -11.0024 -1.8942 37 1 2.0351 -9.7903 -0.5897 38 1 0.9563 -11.9825 0.0289 39 1 2.3008 -11.5358 1.1069 40 1 2.8697 -15.1521 0.5167 41 1 2.4626 -13.9192 1.7344 42 1 0.5508 -15.1970 1.0885 43 1 5.8903 -14.1297 -0.3710 44 1 5.7738 -11.6593 -0.9710 45 1 4.5533 -12.2210 -2.1424 46 1 1.6758 -6.8423 -0.4347 47 1 0.3520 -4.7837 -0.2307 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493734412.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:28 Heat of formation + Delta-G solvation = -120.056218 kcal Electronic energy + Delta-G solvation = -29125.193180 eV Core-core repulsion = 24853.014526 eV Total energy + Delta-G solvation = -4272.178654 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.51964 -39.23136 -38.61821 -36.97539 -36.84084 -36.03757 -33.30802 -32.99296 -32.34210 -30.54158 -30.42039 -28.54205 -27.38255 -25.69166 -24.01423 -23.55953 -22.67851 -22.08456 -20.96179 -20.10200 -18.78872 -18.16632 -17.74795 -17.61712 -17.37280 -16.99663 -16.09568 -15.75273 -15.16115 -15.06582 -14.79947 -14.67553 -14.50156 -14.32367 -14.06138 -13.84609 -13.57750 -13.49497 -13.14999 -13.06112 -12.92628 -12.73899 -12.59855 -12.27653 -11.93509 -11.80139 -11.77213 -11.36266 -11.12496 -11.12344 -11.09643 -10.88037 -10.71523 -10.61414 -10.56146 -10.28716 -9.77098 -9.63045 -9.52400 -8.92347 -8.76797 -8.40690 -7.14020 -6.66981 -4.21855 1.02618 2.11372 2.50998 2.80820 3.02775 3.04234 3.06869 3.48003 3.66950 3.80680 3.80978 4.28132 4.42214 4.48574 4.62960 4.67212 4.78107 4.86599 4.89898 4.95464 5.01334 5.04008 5.10694 5.20090 5.38328 5.41221 5.46968 5.49964 5.52219 5.54509 5.61178 5.65682 5.74932 5.92705 5.98900 6.09696 6.22286 6.43994 6.48571 6.58044 6.76646 6.89140 7.10337 7.15342 7.20853 7.24448 7.24758 7.34277 7.61492 7.78122 8.21675 8.77550 9.44165 10.49439 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.023819 B = 0.001706 C = 0.001607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.270092 B =16413.511674 C =17422.849831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.042 3.958 3 Si 0.945 3.055 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.394 4.394 8 H 0.097 0.903 9 O -0.161 6.161 10 C 0.167 3.833 11 C -0.242 4.242 12 C -0.034 4.034 13 C -0.200 4.200 14 C 0.042 3.958 15 C -0.288 4.288 16 C 0.561 3.439 17 O -0.559 6.559 18 N -0.613 5.613 19 C 0.104 3.896 20 C -0.126 4.126 21 C -0.079 4.079 22 H 0.086 0.914 23 C 0.084 3.916 24 O -0.574 6.574 25 C 0.099 3.901 26 H 0.062 0.938 27 O -0.563 6.563 28 C 0.085 3.915 29 C -0.042 4.042 30 C -0.199 4.199 31 H 0.275 0.725 32 H 0.131 0.869 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.043 0.957 42 H 0.379 0.621 43 H 0.382 0.618 44 H 0.095 0.905 45 H 0.073 0.927 46 H 0.117 0.883 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.226 -24.170 0.417 24.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.164 4.164 3 Si 0.769 3.231 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.469 4.469 8 H 0.114 0.886 9 O -0.062 6.062 10 C 0.110 3.890 11 C -0.262 4.262 12 C -0.052 4.052 13 C -0.201 4.201 14 C 0.022 3.978 15 C -0.308 4.308 16 C 0.355 3.645 17 O -0.440 6.440 18 N -0.348 5.348 19 C -0.019 4.019 20 C -0.164 4.164 21 C -0.098 4.098 22 H 0.105 0.895 23 C 0.006 3.994 24 O -0.379 6.379 25 C 0.039 3.961 26 H 0.080 0.920 27 O -0.368 6.368 28 C -0.039 4.039 29 C -0.060 4.060 30 C -0.218 4.218 31 H 0.085 0.915 32 H 0.149 0.851 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.089 0.911 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.226 0.774 43 H 0.230 0.770 44 H 0.114 0.886 45 H 0.091 0.909 46 H 0.135 0.865 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.850 -23.632 -0.043 24.124 hybrid contribution 0.922 0.522 0.508 1.175 sum 5.772 -23.110 0.465 23.825 Atomic orbital electron populations 1.70000 1.06143 1.28414 1.43819 1.25398 0.95909 0.99162 0.95981 0.85712 0.78773 0.79196 0.79448 1.19237 1.20064 1.19243 1.21433 0.92089 0.80561 1.52819 0.88566 1.83905 1.34965 1.11801 1.75524 1.19611 0.90327 0.87877 0.91138 1.21099 0.93641 0.99137 1.12291 1.20988 0.98587 0.91375 0.94286 1.18451 0.92975 0.92270 1.16440 1.22305 0.99174 0.91048 0.85271 1.22499 0.99819 0.91716 1.16797 1.18441 0.87401 0.83589 0.75072 1.90756 1.14584 1.86623 1.52031 1.47850 1.06793 1.07544 1.72634 1.21892 0.79518 1.00607 0.99870 1.21956 1.01515 0.93186 0.99782 1.21106 0.92230 0.95184 1.01231 0.89543 1.22121 0.81829 0.97892 0.97565 1.86447 1.24522 1.61750 1.65219 1.22095 0.92236 0.83998 0.97777 0.92013 1.86500 1.24100 1.32854 1.93359 1.22196 0.97905 0.84562 0.99220 1.20862 0.92625 0.96851 0.95695 1.20146 0.99787 0.90147 1.11769 0.91511 0.85110 0.86814 0.85983 0.85510 0.91137 0.88465 0.88975 0.91234 0.92601 0.93885 0.77381 0.77020 0.88623 0.90889 0.86505 0.86093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.65 13.67 55.48 0.76 -22.89 16 2 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 19.37 29.55 -169.99 -5.02 14.35 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 6 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 7 C -0.39 -10.37 9.48 30.91 0.29 -10.07 16 8 H 0.10 2.32 5.18 -52.49 -0.27 2.05 16 9 O -0.16 -4.33 9.74 0.72 0.01 -4.33 16 10 C 0.17 3.80 6.66 -38.89 -0.26 3.54 16 11 C -0.24 -4.96 9.14 -39.47 -0.36 -5.32 16 12 C -0.03 -0.60 9.79 -39.14 -0.38 -0.98 16 13 C -0.20 -3.36 5.87 -105.02 -0.62 -3.98 16 14 C 0.04 0.63 9.45 -37.20 -0.35 0.28 16 15 C -0.29 -3.91 8.72 -37.51 -0.33 -4.23 16 16 C 0.56 7.89 7.61 -13.04 -0.10 7.80 16 17 O -0.56 -9.58 15.66 5.18 0.08 -9.50 16 18 N -0.61 -6.71 2.97 -174.46 -0.52 -7.23 16 19 C 0.10 0.89 6.31 -3.70 -0.02 0.87 16 20 C -0.13 -1.00 5.27 -26.61 -0.14 -1.14 16 21 C -0.08 -0.64 2.14 -90.57 -0.19 -0.84 16 22 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 23 C 0.08 0.63 6.34 37.16 0.24 0.86 16 24 O -0.57 -4.40 13.17 -35.23 -0.46 -4.87 16 25 C 0.10 0.80 3.07 -26.61 -0.08 0.72 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 O -0.56 -4.15 12.51 -35.23 -0.44 -4.59 16 28 C 0.08 0.80 6.07 -3.71 -0.02 0.78 16 29 C -0.04 -0.70 9.40 -39.15 -0.37 -1.07 16 30 C -0.20 -3.92 9.97 -39.47 -0.39 -4.32 16 31 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 32 H 0.13 2.64 5.61 -52.48 -0.29 2.35 16 33 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 34 H 0.12 1.82 7.53 -52.48 -0.40 1.43 16 35 H 0.13 1.48 3.91 -52.48 -0.20 1.27 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.10 0.80 5.37 -51.93 -0.28 0.52 16 38 H 0.09 0.71 7.79 -51.93 -0.40 0.31 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.43 7.50 -51.93 -0.39 0.04 16 41 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 42 H 0.38 1.28 9.12 45.56 0.42 1.70 16 43 H 0.38 1.42 9.08 45.56 0.41 1.83 16 44 H 0.10 0.99 6.99 -51.93 -0.36 0.63 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.12 1.58 6.16 -52.49 -0.32 1.25 16 47 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 386.91 15.07 5.83 5.83 Total: -1.00 -32.76 386.91 -7.57 -40.33 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -4.61 Total: 9.01 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -3.19 Total: -16.12 kcal Atomic # 7 Polarization: -30.36 SS G_CDS: 0.24 Total: -30.12 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.82 Total: -23.28 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.76 -7.57 -40.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493734412.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.722 kcal (2) G-P(sol) polarization free energy of solvation -32.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds