Wall clock time and date at job start Wed Apr 1 2020 04:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00201 * 2 1 4 4 H 1.48501 * 109.47137 * 240.00135 * 3 2 1 5 5 H 1.48503 * 109.46947 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47283 * 119.99538 * 3 2 1 7 7 C 1.38716 * 119.99508 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99353 * 179.97438 * 7 2 1 9 9 O 1.34777 * 120.00382 * 0.02562 * 7 2 1 10 10 C 1.35575 * 116.99998 * 185.06700 * 9 7 2 11 11 C 1.39175 * 119.89844 * 173.96513 * 10 9 7 12 12 C 1.37600 * 120.10256 * 179.71903 * 11 10 9 13 13 C 1.40023 * 119.89479 * 0.57441 * 12 11 10 14 14 C 1.46958 * 120.10184 * 179.67644 * 13 12 11 15 15 C 1.35023 * 119.99869 * 46.51484 * 14 13 12 16 16 C 1.46250 * 119.99966 * 10.68718 * 15 14 13 17 17 O 1.21722 * 120.00076 * 7.08041 * 16 15 14 18 18 N 1.34776 * 120.00121 * 187.08157 * 16 15 14 19 19 C 1.46930 * 120.62782 * 4.82896 * 18 16 15 20 20 C 1.52767 * 109.00506 * 233.58593 * 19 18 16 21 21 C 1.53044 * 109.38217 * 305.58867 * 20 19 18 22 22 H 1.09001 * 109.45135 * 301.22758 * 21 20 19 23 23 C 1.53005 * 109.45840 * 181.26418 * 21 20 19 24 24 O 1.42896 * 109.47239 * 64.93180 * 23 21 20 25 25 C 1.53042 * 109.53918 * 61.24109 * 21 20 19 26 26 H 1.09000 * 109.51949 * 178.66779 * 25 21 20 27 27 O 1.42901 * 109.49580 * 58.58689 * 25 21 20 28 28 C 1.46930 * 120.63254 * 185.11008 * 18 16 15 29 29 C 1.40026 * 119.79641 * 359.70127 * 13 12 11 30 30 C 1.37598 * 119.90379 * 359.97438 * 29 13 12 31 31 H 0.97005 * 119.99766 * 0.02562 * 1 2 3 32 32 H 1.08003 * 119.94969 * 359.97438 * 11 10 9 33 33 H 1.08000 * 120.05266 * 180.26991 * 12 11 10 34 34 H 1.08003 * 119.99826 * 226.52401 * 14 13 12 35 35 H 1.08002 * 120.00110 * 190.68257 * 15 14 13 36 36 H 1.08994 * 109.58648 * 353.41812 * 19 18 16 37 37 H 1.08996 * 109.58281 * 113.84920 * 19 18 16 38 38 H 1.08996 * 109.56176 * 185.55450 * 20 19 18 39 39 H 1.08991 * 109.38887 * 65.51269 * 20 19 18 40 40 H 1.08999 * 109.46756 * 184.93401 * 23 21 20 41 41 H 1.08998 * 109.46852 * 304.92780 * 23 21 20 42 42 H 0.96696 * 113.99965 * 180.02562 * 24 23 21 43 43 H 0.96701 * 113.99819 * 180.16088 * 27 25 21 44 44 H 1.09001 * 109.58499 * 246.15249 * 28 18 16 45 45 H 1.08999 * 109.58243 * 6.43489 * 28 18 16 46 46 H 1.08005 * 120.04700 * 179.97438 * 29 13 12 47 47 H 1.07987 * 119.95374 * 180.02562 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0086 -1.2014 0.0005 8 1 3.0886 -1.2014 0.0001 9 8 1.3347 -2.3686 0.0005 10 6 2.0689 -3.5032 0.1078 11 6 1.4304 -4.7327 0.2406 12 6 2.1715 -5.8876 0.3440 13 6 3.5701 -5.8231 0.3274 14 6 4.3660 -7.0529 0.4446 15 6 4.0491 -8.1355 -0.2975 16 6 3.0725 -8.0195 -1.3800 17 8 2.6420 -6.9260 -1.6968 18 7 2.6493 -9.1236 -2.0269 19 6 3.0780 -10.4587 -1.5883 20 6 3.6816 -11.2032 -2.7779 21 6 2.6781 -11.2128 -3.9334 22 1 1.7557 -11.6947 -3.6091 23 6 3.2685 -11.9852 -5.1149 24 8 3.4401 -13.3560 -4.7498 25 6 2.3783 -9.7748 -4.3629 26 1 1.6817 -9.7829 -5.2013 27 8 3.5920 -9.1320 -4.7573 28 6 1.7554 -9.0145 -3.1879 29 6 4.2081 -4.5832 0.1993 30 6 3.4589 -3.4343 0.0898 31 1 -0.4850 0.8401 -0.0004 32 1 0.3516 -4.7809 0.2585 33 1 1.6751 -6.8417 0.4427 34 1 5.2044 -7.0908 1.1245 35 1 4.5168 -9.0870 -0.0918 36 1 3.8262 -10.3622 -0.8017 37 1 2.2184 -11.0131 -1.2119 38 1 3.9125 -12.2282 -2.4880 39 1 4.5953 -10.6999 -3.0939 40 1 2.5923 -11.9180 -5.9671 41 1 4.2343 -11.5568 -5.3827 42 1 3.8118 -13.9066 -5.4525 43 1 3.4772 -8.2145 -5.0403 44 1 0.7857 -9.4488 -2.9445 45 1 1.6293 -7.9652 -3.4546 46 1 5.2867 -4.5288 0.1865 47 1 3.9500 -2.4778 -0.0094 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493734415.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:37 Heat of formation + Delta-G solvation = -101.194142 kcal Electronic energy + Delta-G solvation = -30366.790493 eV Core-core repulsion = 26095.429760 eV Total energy + Delta-G solvation = -4271.360733 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.46626 -39.08237 -38.37524 -36.92249 -36.38172 -35.47243 -33.10628 -32.85030 -32.12296 -30.57413 -30.09069 -28.36060 -27.26203 -25.41532 -23.95529 -23.50823 -22.41917 -21.75333 -20.88880 -20.09882 -18.64215 -17.88759 -17.70681 -17.45287 -16.99732 -16.74164 -15.75019 -15.53765 -15.06773 -14.87383 -14.71081 -14.52589 -14.44263 -14.09563 -13.85041 -13.63447 -13.52194 -13.26695 -13.14388 -12.86143 -12.73917 -12.55157 -12.40930 -12.13000 -11.93139 -11.69123 -11.40688 -11.22098 -11.08943 -10.97526 -10.83471 -10.64263 -10.61212 -10.42096 -10.35014 -10.25572 -9.43559 -9.33417 -9.15127 -8.69612 -8.54506 -7.91548 -6.85371 -6.43959 -3.99962 1.29499 2.43707 2.69239 3.04314 3.14514 3.16694 3.18324 3.60162 3.76528 3.97781 3.98570 4.36668 4.47123 4.66081 4.70566 4.80599 4.86077 5.00964 5.07302 5.09439 5.15478 5.17827 5.21761 5.34918 5.43126 5.50273 5.54982 5.59284 5.64761 5.65074 5.76420 5.82705 5.87117 6.10895 6.25940 6.32604 6.43771 6.54304 6.63774 6.81131 7.05446 7.13731 7.23661 7.37439 7.39001 7.46180 7.52159 7.56835 7.94159 8.02630 8.52478 9.01640 9.74106 10.73897 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.021653 B = 0.002139 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.783642 B =13088.600993 C =13618.366772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.390 4.390 8 H 0.093 0.907 9 O -0.174 6.174 10 C 0.170 3.830 11 C -0.201 4.201 12 C 0.006 3.994 13 C -0.183 4.183 14 C 0.025 3.975 15 C -0.264 4.264 16 C 0.546 3.454 17 O -0.514 6.514 18 N -0.610 5.610 19 C 0.108 3.892 20 C -0.123 4.123 21 C -0.077 4.077 22 H 0.088 0.912 23 C 0.084 3.916 24 O -0.575 6.575 25 C 0.097 3.903 26 H 0.065 0.935 27 O -0.559 6.559 28 C 0.083 3.917 29 C -0.043 4.043 30 C -0.248 4.248 31 H 0.271 0.729 32 H 0.113 0.887 33 H 0.100 0.900 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.042 0.958 41 H 0.055 0.945 42 H 0.379 0.621 43 H 0.382 0.618 44 H 0.071 0.929 45 H 0.099 0.901 46 H 0.105 0.895 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.638 -24.172 -7.072 26.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.110 0.890 9 O -0.076 6.076 10 C 0.115 3.885 11 C -0.220 4.220 12 C -0.012 4.012 13 C -0.184 4.184 14 C 0.005 3.995 15 C -0.285 4.285 16 C 0.338 3.662 17 O -0.390 6.390 18 N -0.345 5.345 19 C -0.015 4.015 20 C -0.161 4.161 21 C -0.096 4.096 22 H 0.106 0.894 23 C 0.006 3.994 24 O -0.381 6.381 25 C 0.037 3.963 26 H 0.082 0.918 27 O -0.365 6.365 28 C -0.041 4.041 29 C -0.062 4.062 30 C -0.267 4.267 31 H 0.081 0.919 32 H 0.131 0.869 33 H 0.118 0.882 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.225 0.775 43 H 0.230 0.770 44 H 0.089 0.911 45 H 0.117 0.883 46 H 0.123 0.877 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.941 -23.686 -6.545 25.535 hybrid contribution 0.481 0.940 -0.864 1.364 sum 7.422 -22.746 -7.409 25.047 Atomic orbital electron populations 1.70017 1.06010 1.27812 1.45704 1.25320 0.95846 0.98889 0.96541 0.85769 0.78697 0.79687 0.79215 1.19484 1.20285 1.19455 1.21334 0.91868 0.80824 1.52598 0.88985 1.83907 1.34703 1.11623 1.77387 1.19522 0.90251 0.87752 0.90969 1.20000 0.99247 0.90352 1.12438 1.20408 0.92066 0.95752 0.92997 1.18287 0.92994 0.91938 1.15204 1.22359 0.93622 0.91529 0.91951 1.22721 1.05416 0.99698 1.00617 1.18445 0.81213 0.83415 0.83089 1.90978 1.56408 1.25348 1.66283 1.47894 1.49201 1.06276 1.31105 1.21687 0.99723 0.83024 0.97104 1.21769 0.99017 1.00897 0.94422 1.21125 1.00152 0.92640 0.95684 0.89391 1.22142 0.99862 0.81432 0.95952 1.86441 1.87237 1.20432 1.43965 1.22113 0.86821 0.92050 0.95294 0.91755 1.86462 1.31719 1.30596 1.87711 1.22199 0.92839 1.02892 0.86150 1.20724 0.97873 0.91329 0.96237 1.20947 0.93658 0.98744 1.13377 0.91943 0.86891 0.88194 0.86074 0.85912 0.89199 0.91802 0.90279 0.90636 0.93938 0.92693 0.77454 0.77021 0.91068 0.88272 0.87651 0.85679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.61 13.67 55.48 0.76 -24.85 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.81 29.55 -169.99 -5.02 15.78 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.39 -11.16 9.48 30.91 0.29 -10.87 16 8 H 0.09 2.44 5.18 -52.48 -0.27 2.16 16 9 O -0.17 -5.14 9.74 0.74 0.01 -5.13 16 10 C 0.17 4.35 6.66 -38.88 -0.26 4.09 16 11 C -0.20 -4.65 9.97 -39.47 -0.39 -5.04 16 12 C 0.01 0.13 6.68 -39.15 -0.26 -0.13 16 13 C -0.18 -3.42 4.42 -105.03 -0.46 -3.89 16 14 C 0.02 0.36 9.79 -37.19 -0.36 -0.01 16 15 C -0.26 -3.47 9.22 -37.51 -0.35 -3.82 16 16 C 0.55 8.27 6.75 -13.04 -0.09 8.18 16 17 O -0.51 -9.93 11.77 5.17 0.06 -9.87 16 18 N -0.61 -7.21 2.92 -174.73 -0.51 -7.72 16 19 C 0.11 0.97 6.32 -3.93 -0.02 0.94 16 20 C -0.12 -1.06 5.12 -26.83 -0.14 -1.20 16 21 C -0.08 -0.63 2.22 -90.57 -0.20 -0.83 16 22 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 23 C 0.08 0.63 6.23 37.16 0.23 0.86 16 24 O -0.58 -4.28 13.17 -35.23 -0.46 -4.74 16 25 C 0.10 0.83 3.23 -26.61 -0.09 0.75 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 O -0.56 -5.53 11.99 -35.23 -0.42 -5.96 16 28 C 0.08 0.87 6.06 -3.71 -0.02 0.85 16 29 C -0.04 -0.85 9.78 -39.15 -0.38 -1.23 16 30 C -0.25 -5.71 9.14 -39.47 -0.36 -6.07 16 31 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.11 2.55 8.06 -52.48 -0.42 2.13 16 33 H 0.10 1.85 7.28 -52.49 -0.38 1.47 16 34 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 35 H 0.12 1.21 5.91 -52.49 -0.31 0.90 16 36 H 0.09 0.72 5.32 -51.93 -0.28 0.45 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.65 7.79 -51.93 -0.40 0.24 16 39 H 0.07 0.78 7.61 -51.93 -0.40 0.38 16 40 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.05 0.45 7.87 -51.93 -0.41 0.04 16 42 H 0.38 1.20 9.12 45.56 0.42 1.62 16 43 H 0.38 3.07 9.08 45.56 0.41 3.49 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.10 1.24 7.03 -51.93 -0.37 0.88 16 46 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 47 H 0.13 2.85 5.62 -52.49 -0.29 2.55 16 LS Contribution 381.70 15.07 5.75 5.75 Total: -1.00 -35.81 381.70 -7.60 -43.42 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -4.80 Total: 9.77 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -2.96 Total: -16.45 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: 0.25 Total: -32.57 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.82 Total: -25.70 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.81 -7.60 -43.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493734415.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.778 kcal (2) G-P(sol) polarization free energy of solvation -35.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds