Wall clock time and date at job start Wed Apr 1 2020 04:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00201 * 2 1 4 4 H 1.48501 * 109.47137 * 240.00135 * 3 2 1 5 5 H 1.48503 * 109.46947 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47283 * 119.99538 * 3 2 1 7 7 C 1.38716 * 119.99508 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99353 * 179.97438 * 7 2 1 9 9 O 1.34777 * 120.00382 * 0.02562 * 7 2 1 10 10 C 1.35575 * 116.99998 * 185.06700 * 9 7 2 11 11 C 1.39175 * 119.89844 * 173.96513 * 10 9 7 12 12 C 1.37600 * 120.10256 * 179.71903 * 11 10 9 13 13 C 1.40023 * 119.89479 * 0.57441 * 12 11 10 14 14 C 1.46958 * 120.10184 * 179.67644 * 13 12 11 15 15 C 1.35023 * 119.99869 * 46.51484 * 14 13 12 16 16 C 1.46250 * 119.99966 * 10.68718 * 15 14 13 17 17 O 1.21722 * 120.00076 * 7.08041 * 16 15 14 18 18 N 1.34776 * 120.00121 * 187.08157 * 16 15 14 19 19 C 1.46930 * 120.62782 * 4.82896 * 18 16 15 20 20 C 1.52767 * 109.00506 * 233.58593 * 19 18 16 21 21 C 1.53044 * 109.38217 * 305.58867 * 20 19 18 22 22 H 1.09001 * 109.45135 * 301.22758 * 21 20 19 23 23 C 1.53005 * 109.45840 * 181.26418 * 21 20 19 24 24 O 1.42896 * 109.47239 * 64.93180 * 23 21 20 25 25 C 1.53042 * 109.53918 * 61.24109 * 21 20 19 26 26 H 1.09000 * 109.51949 * 178.66779 * 25 21 20 27 27 O 1.42901 * 109.49580 * 58.58689 * 25 21 20 28 28 C 1.46930 * 120.63254 * 185.11008 * 18 16 15 29 29 C 1.40026 * 119.79641 * 359.70127 * 13 12 11 30 30 C 1.37598 * 119.90379 * 359.97438 * 29 13 12 31 31 H 0.97005 * 119.99766 * 0.02562 * 1 2 3 32 32 H 1.08003 * 119.94969 * 359.97438 * 11 10 9 33 33 H 1.08000 * 120.05266 * 180.26991 * 12 11 10 34 34 H 1.08003 * 119.99826 * 226.52401 * 14 13 12 35 35 H 1.08002 * 120.00110 * 190.68257 * 15 14 13 36 36 H 1.08994 * 109.58648 * 353.41812 * 19 18 16 37 37 H 1.08996 * 109.58281 * 113.84920 * 19 18 16 38 38 H 1.08996 * 109.56176 * 185.55450 * 20 19 18 39 39 H 1.08991 * 109.38887 * 65.51269 * 20 19 18 40 40 H 1.08999 * 109.46756 * 184.93401 * 23 21 20 41 41 H 1.08998 * 109.46852 * 304.92780 * 23 21 20 42 42 H 0.96696 * 113.99965 * 180.02562 * 24 23 21 43 43 H 0.96701 * 113.99819 * 180.16088 * 27 25 21 44 44 H 1.09001 * 109.58499 * 246.15249 * 28 18 16 45 45 H 1.08999 * 109.58243 * 6.43489 * 28 18 16 46 46 H 1.08005 * 120.04700 * 179.97438 * 29 13 12 47 47 H 1.07987 * 119.95374 * 180.02562 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0086 -1.2014 0.0005 8 1 3.0886 -1.2014 0.0001 9 8 1.3347 -2.3686 0.0005 10 6 2.0689 -3.5032 0.1078 11 6 1.4304 -4.7327 0.2406 12 6 2.1715 -5.8876 0.3440 13 6 3.5701 -5.8231 0.3274 14 6 4.3660 -7.0529 0.4446 15 6 4.0491 -8.1355 -0.2975 16 6 3.0725 -8.0195 -1.3800 17 8 2.6420 -6.9260 -1.6968 18 7 2.6493 -9.1236 -2.0269 19 6 3.0780 -10.4587 -1.5883 20 6 3.6816 -11.2032 -2.7779 21 6 2.6781 -11.2128 -3.9334 22 1 1.7557 -11.6947 -3.6091 23 6 3.2685 -11.9852 -5.1149 24 8 3.4401 -13.3560 -4.7498 25 6 2.3783 -9.7748 -4.3629 26 1 1.6817 -9.7829 -5.2013 27 8 3.5920 -9.1320 -4.7573 28 6 1.7554 -9.0145 -3.1879 29 6 4.2081 -4.5832 0.1993 30 6 3.4589 -3.4343 0.0898 31 1 -0.4850 0.8401 -0.0004 32 1 0.3516 -4.7809 0.2585 33 1 1.6751 -6.8417 0.4427 34 1 5.2044 -7.0908 1.1245 35 1 4.5168 -9.0870 -0.0918 36 1 3.8262 -10.3622 -0.8017 37 1 2.2184 -11.0131 -1.2119 38 1 3.9125 -12.2282 -2.4880 39 1 4.5953 -10.6999 -3.0939 40 1 2.5923 -11.9180 -5.9671 41 1 4.2343 -11.5568 -5.3827 42 1 3.8118 -13.9066 -5.4525 43 1 3.4772 -8.2145 -5.0403 44 1 0.7857 -9.4488 -2.9445 45 1 1.6293 -7.9652 -3.4546 46 1 5.2867 -4.5288 0.1865 47 1 3.9500 -2.4778 -0.0094 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493734415.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:36 Heat of formation + Delta-G solvation = -129.723675 kcal Electronic energy + Delta-G solvation = -30368.027626 eV Core-core repulsion = 26095.429760 eV Total energy + Delta-G solvation = -4272.597866 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.47118 -40.68437 -39.56825 -38.13774 -37.41850 -36.40123 -34.63480 -33.96218 -33.63030 -31.83363 -31.39410 -29.73911 -28.26508 -27.37293 -25.00444 -24.25765 -23.67268 -23.36316 -22.18429 -20.97135 -19.96938 -19.54744 -18.83049 -18.44863 -18.19899 -17.78825 -16.80557 -16.52935 -16.34843 -16.22573 -15.88030 -15.61863 -15.51818 -15.50870 -15.27038 -15.07493 -14.73188 -14.50999 -14.40503 -14.14243 -13.86241 -13.60229 -13.56271 -13.53255 -13.22737 -12.97405 -12.75721 -12.61109 -12.39022 -12.24258 -12.14764 -11.94428 -11.71080 -11.54968 -11.23139 -11.16151 -10.88759 -10.81481 -10.53242 -10.39573 -9.73999 -9.38773 -8.57223 -8.47941 -6.15236 0.01899 0.71105 1.09895 1.33663 1.46747 1.50788 2.10914 2.17625 2.46516 2.86468 3.20083 3.22468 3.30634 3.50444 3.61177 3.76499 3.94434 3.98452 4.00712 4.12727 4.16256 4.18599 4.32978 4.40182 4.47464 4.53909 4.54196 4.57098 4.68007 4.73619 4.77790 4.86249 4.92851 4.98084 5.04351 5.08775 5.11414 5.25609 5.27813 5.42893 5.43382 5.62941 5.68071 5.72545 5.83895 6.02557 6.24774 6.52864 6.70944 6.90256 6.95783 7.38555 7.78054 8.75014 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.021653 B = 0.002139 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.783642 B =13088.600993 C =13618.366772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.025 4.025 3 Si 1.022 2.978 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.415 4.415 8 H 0.102 0.898 9 O -0.231 6.231 10 C 0.126 3.874 11 C -0.218 4.218 12 C 0.009 3.991 13 C -0.154 4.154 14 C 0.005 3.995 15 C -0.234 4.234 16 C 0.531 3.469 17 O -0.568 6.568 18 N -0.603 5.603 19 C 0.102 3.898 20 C -0.115 4.115 21 C -0.080 4.080 22 H 0.095 0.905 23 C 0.089 3.911 24 O -0.589 6.589 25 C 0.103 3.897 26 H 0.083 0.917 27 O -0.572 6.572 28 C 0.078 3.922 29 C -0.049 4.049 30 C -0.256 4.256 31 H 0.273 0.727 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.168 0.832 35 H 0.169 0.831 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.045 0.955 42 H 0.396 0.604 43 H 0.387 0.613 44 H 0.085 0.915 45 H 0.072 0.928 46 H 0.146 0.854 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.714 -27.748 -6.933 30.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.222 4.222 3 Si 0.840 3.160 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.491 4.491 8 H 0.120 0.880 9 O -0.137 6.137 10 C 0.075 3.925 11 C -0.238 4.238 12 C -0.009 4.009 13 C -0.154 4.154 14 C -0.014 4.014 15 C -0.254 4.254 16 C 0.323 3.677 17 O -0.449 6.449 18 N -0.335 5.335 19 C -0.019 4.019 20 C -0.153 4.153 21 C -0.099 4.099 22 H 0.114 0.886 23 C 0.011 3.989 24 O -0.397 6.397 25 C 0.043 3.957 26 H 0.100 0.900 27 O -0.379 6.379 28 C -0.046 4.046 29 C -0.067 4.067 30 C -0.275 4.275 31 H 0.082 0.918 32 H 0.119 0.881 33 H 0.136 0.864 34 H 0.186 0.814 35 H 0.186 0.814 36 H 0.124 0.876 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.246 0.754 43 H 0.236 0.764 44 H 0.103 0.897 45 H 0.091 0.909 46 H 0.164 0.836 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.056 -27.387 -6.424 29.874 hybrid contribution -0.366 1.444 -1.000 1.794 sum 9.690 -25.943 -7.425 28.672 Atomic orbital electron populations 1.70174 1.08130 1.28931 1.48643 1.26680 0.96911 1.02872 0.95754 0.84611 0.77372 0.73969 0.79998 1.18205 1.19476 1.17917 1.21838 0.92593 0.81390 1.53319 0.88047 1.83875 1.36251 1.12728 1.80889 1.19999 0.91682 0.87566 0.93241 1.20177 0.99217 0.90986 1.13380 1.20623 0.93087 0.95096 0.92110 1.18839 0.92781 0.93829 1.09996 1.22587 0.94977 0.89377 0.94441 1.23147 1.03008 1.00997 0.98270 1.18993 0.81484 0.83411 0.83773 1.90980 1.58471 1.27496 1.67921 1.47997 1.48133 1.06806 1.30591 1.21962 1.00904 0.81389 0.97679 1.21680 0.98266 1.01041 0.94313 1.21170 1.00482 0.92240 0.95990 0.88649 1.22032 0.99511 0.81500 0.95858 1.86386 1.87503 1.20471 1.45345 1.22137 0.86659 0.91955 0.94910 0.89953 1.86439 1.32579 1.31160 1.87744 1.22308 0.93657 1.01853 0.86746 1.21152 0.99760 0.90470 0.95350 1.21083 0.92811 1.00076 1.13527 0.91775 0.88053 0.86436 0.81431 0.81399 0.87618 0.90102 0.89314 0.92284 0.92906 0.93686 0.75385 0.76429 0.89702 0.90925 0.83601 0.86212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.46 13.67 21.62 0.30 -58.16 16 2 C -0.02 -1.46 5.49 84.86 0.47 -1.00 16 3 Si 1.02 44.22 29.55 68.60 2.03 46.24 16 4 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 5 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 6 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 7 C -0.42 -25.38 9.48 67.93 0.64 -24.74 16 8 H 0.10 5.68 5.18 -2.91 -0.02 5.67 16 9 O -0.23 -14.86 9.74 -20.27 -0.20 -15.06 16 10 C 0.13 6.89 6.66 22.72 0.15 7.05 16 11 C -0.22 -10.70 9.97 22.34 0.22 -10.48 16 12 C 0.01 0.37 6.68 22.55 0.15 0.52 16 13 C -0.15 -5.41 4.42 -20.13 -0.09 -5.50 16 14 C 0.01 0.13 9.79 23.82 0.23 0.36 16 15 C -0.23 -5.00 9.22 23.61 0.22 -4.78 16 16 C 0.53 14.72 6.75 86.32 0.58 15.30 16 17 O -0.57 -21.67 11.77 -4.42 -0.05 -21.72 16 18 N -0.60 -12.63 2.92 -824.93 -2.41 -15.04 16 19 C 0.10 1.41 6.32 86.22 0.54 1.95 16 20 C -0.11 -1.58 5.12 30.53 0.16 -1.43 16 21 C -0.08 -1.08 2.22 -10.76 -0.02 -1.10 16 22 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 23 C 0.09 1.09 6.23 71.98 0.45 1.54 16 24 O -0.59 -7.04 13.17 -148.98 -1.96 -9.00 16 25 C 0.10 1.56 3.23 30.67 0.10 1.66 16 26 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 27 O -0.57 -10.53 11.99 -148.98 -1.79 -12.32 16 28 C 0.08 1.53 6.06 86.36 0.52 2.06 16 29 C -0.05 -1.87 9.78 22.55 0.22 -1.65 16 30 C -0.26 -12.15 9.14 22.34 0.20 -11.95 16 31 H 0.27 15.84 8.31 -92.70 -0.77 15.07 16 32 H 0.10 5.01 8.06 -2.91 -0.02 4.99 16 33 H 0.12 4.23 7.28 -2.91 -0.02 4.21 16 34 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 35 H 0.17 2.13 5.91 -2.91 -0.02 2.11 16 36 H 0.11 1.10 5.32 -2.39 -0.01 1.09 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.09 1.10 7.79 -2.39 -0.02 1.08 16 39 H 0.06 1.04 7.61 -2.39 -0.02 1.02 16 40 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.04 0.64 7.87 -2.39 -0.02 0.63 16 42 H 0.40 1.44 9.12 -74.06 -0.68 0.76 16 43 H 0.39 6.06 9.08 -74.06 -0.67 5.38 16 44 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.07 1.85 7.03 -2.39 -0.02 1.84 16 46 H 0.15 4.31 8.06 -2.91 -0.02 4.28 16 47 H 0.12 5.68 5.62 -2.92 -0.02 5.66 16 Total: -1.00 -86.11 381.70 0.35 -85.76 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: -0.32 Total: 31.48 kcal Atomic # 6 Polarization: -36.94 SS G_CDS: 4.75 Total: -32.18 kcal Atomic # 7 Polarization: -71.09 SS G_CDS: -2.11 Total: -73.20 kcal Atomic # 8 Polarization: -54.10 SS G_CDS: -4.00 Total: -58.09 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -86.11 0.35 -85.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493734415.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.966 kcal (2) G-P(sol) polarization free energy of solvation -86.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds