Wall clock time and date at job start Wed Apr 1 2020 04:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 120.00078 * 2 1 4 4 H 1.48505 * 109.46827 * 270.00123 * 3 2 1 5 5 H 1.48496 * 109.47069 * 29.99824 * 3 2 1 6 6 H 1.48497 * 109.47153 * 150.00203 * 3 2 1 7 7 C 1.37879 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00221 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99883 * 180.02562 * 7 2 1 10 10 O 1.42899 * 113.01615 * 311.65864 * 9 7 2 11 11 C 1.53945 * 113.73855 * 180.02562 * 9 7 2 12 12 N 1.47585 * 86.11483 * 222.04190 * 11 9 7 13 13 C 1.34778 * 134.49375 * 204.63817 * 12 11 9 14 14 O 1.21282 * 119.99697 * 355.23813 * 13 12 11 15 15 C 1.50702 * 120.00060 * 175.24359 * 13 12 11 16 16 H 1.09002 * 109.46647 * 332.44133 * 15 13 12 17 17 C 1.52996 * 109.47305 * 92.44237 * 15 13 12 18 18 C 1.53002 * 109.47244 * 180.02562 * 17 15 13 19 19 C 1.53004 * 109.46763 * 299.99985 * 18 17 15 20 20 C 1.53003 * 109.47205 * 359.97438 * 19 18 17 21 21 C 1.52999 * 109.46729 * 300.00213 * 20 19 18 22 22 C 1.52994 * 109.47255 * 59.99598 * 17 15 13 23 23 C 1.52995 * 109.46870 * 212.44203 * 15 13 12 24 24 H 1.09002 * 109.47531 * 0.02562 * 23 15 13 25 25 C 1.53008 * 109.46967 * 119.99886 * 23 15 13 26 26 F 1.39898 * 109.47148 * 53.45100 * 25 23 15 27 27 F 1.39904 * 109.47126 * 173.45109 * 25 23 15 28 28 F 1.39901 * 109.46974 * 293.45024 * 25 23 15 29 29 C 1.47578 * 91.01265 * 24.64224 * 12 11 9 30 30 H 0.97010 * 120.00129 * 359.97438 * 1 2 3 31 31 H 0.96697 * 114.00062 * 48.34506 * 10 9 7 32 32 H 1.09002 * 113.77354 * 336.34449 * 11 9 7 33 33 H 1.08996 * 113.77289 * 107.74615 * 11 9 7 34 34 H 1.09001 * 109.47015 * 300.00034 * 17 15 13 35 35 H 1.09002 * 109.46878 * 59.99791 * 18 17 15 36 36 H 1.08996 * 109.47031 * 179.97438 * 18 17 15 37 37 H 1.08996 * 109.46959 * 239.99574 * 19 18 17 38 38 H 1.09005 * 109.46945 * 120.00023 * 19 18 17 39 39 H 1.08992 * 109.47119 * 180.02562 * 20 19 18 40 40 H 1.09004 * 109.47123 * 299.99816 * 21 20 19 41 41 H 1.09004 * 109.46966 * 180.02562 * 21 20 19 42 42 H 1.09002 * 109.47354 * 179.97438 * 22 17 15 43 43 H 1.08990 * 109.47792 * 300.00197 * 22 17 15 44 44 H 1.08996 * 113.76735 * 221.05774 * 29 12 11 45 45 H 1.08997 * 113.77089 * 89.66246 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 8 4.0705 -0.3200 -0.9815 11 6 4.1312 -2.6032 0.0010 12 7 5.0916 -2.0717 0.9876 13 6 6.3433 -2.4037 1.3611 14 8 6.8743 -3.3889 0.8937 15 6 7.0829 -1.5510 2.3596 16 1 6.7181 -0.5255 2.3023 17 6 6.8492 -2.0976 3.7693 18 6 7.5996 -1.2315 4.7831 19 6 9.0965 -1.2582 4.4674 20 6 9.3440 -2.1426 3.2436 21 6 8.8587 -3.5640 3.5352 22 6 7.3611 -3.5371 3.8496 23 6 8.5797 -1.5783 2.0437 24 1 8.7556 -2.2076 1.1713 25 6 9.0655 -0.1569 1.7528 26 9 8.7060 0.6845 2.8111 27 9 10.4573 -0.1595 1.6112 28 9 8.4773 0.3041 0.5701 29 6 4.1308 -1.0305 1.4009 30 1 -0.4851 0.8401 0.0004 31 1 3.6839 0.5663 -0.9851 32 1 3.4716 -3.3734 0.4009 33 1 4.5868 -2.8828 -0.9489 34 1 5.7828 -2.0782 3.9943 35 1 7.2344 -0.2061 4.7257 36 1 7.4327 -1.6206 5.7874 37 1 9.6408 -1.6601 5.3218 38 1 9.4422 -0.2454 4.2602 39 1 10.4103 -2.1619 3.0190 40 1 9.4032 -3.9656 4.3899 41 1 9.0355 -4.1942 2.6636 42 1 7.1950 -3.9263 4.8541 43 1 6.8262 -4.1539 3.1276 44 1 4.5859 -0.0544 1.5687 45 1 3.4710 -1.3386 2.2120 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569920264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:42 Heat of formation + Delta-G solvation = -199.081925 kcal Electronic energy + Delta-G solvation = -33944.935986 eV Core-core repulsion = 29127.473780 eV Total energy + Delta-G solvation = -4817.462206 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.150 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.24014 -47.70656 -47.61750 -41.18681 -39.38958 -37.40198 -34.54370 -32.59166 -32.39662 -31.94555 -30.95254 -28.93912 -26.45717 -25.54282 -25.14592 -22.87556 -22.73152 -22.02718 -20.32808 -19.03907 -18.51481 -18.39720 -18.13251 -17.47589 -16.87189 -16.71156 -16.31630 -16.05728 -15.86292 -15.14363 -14.69412 -14.51565 -14.41245 -14.19225 -13.99158 -13.79162 -13.73596 -13.68140 -13.43851 -13.17348 -12.80404 -12.58119 -12.45917 -12.37697 -12.25143 -12.22418 -12.20968 -12.18654 -11.84437 -11.74669 -11.29175 -11.07960 -10.92497 -10.63503 -10.26127 -10.17508 -10.13517 -10.03521 -9.72535 -9.33117 -9.04474 -8.72600 -8.11351 -6.46611 -4.53058 2.66035 2.88686 2.96335 2.99035 3.11679 3.23129 3.70992 3.82382 3.98808 4.00846 4.39512 4.44246 4.49938 4.60957 4.80127 4.88351 4.92682 4.98800 5.06141 5.12645 5.19807 5.23346 5.27563 5.37105 5.47170 5.54583 5.56405 5.76467 5.88149 5.95952 5.96666 6.01892 6.05079 6.11368 6.15245 6.18993 6.20434 6.28334 6.29719 6.38292 6.55174 7.14579 7.97257 8.19331 8.44865 8.50611 8.57257 9.10812 10.65491 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.015172 B = 0.004182 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.116755 B = 6693.120386 C = 7276.737600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.081 3.919 3 Si 0.856 3.144 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.256 1.256 7 C -0.537 4.537 8 H 0.092 0.908 9 C 0.196 3.804 10 O -0.552 6.552 11 C 0.127 3.873 12 N -0.629 5.629 13 C 0.540 3.460 14 O -0.553 6.553 15 C -0.093 4.093 16 H 0.095 0.905 17 C -0.071 4.071 18 C -0.111 4.111 19 C -0.135 4.135 20 C -0.079 4.079 21 C -0.104 4.104 22 C -0.118 4.118 23 C -0.116 4.116 24 H 0.130 0.870 25 C 0.452 3.548 26 F -0.177 7.177 27 F -0.184 7.184 28 F -0.179 7.179 29 C 0.062 3.938 30 H 0.271 0.729 31 H 0.352 0.648 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.642 -1.193 10.172 19.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.124 4.124 3 Si 0.685 3.315 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.182 1.182 7 C -0.575 4.575 8 H 0.110 0.890 9 C 0.155 3.845 10 O -0.363 6.363 11 C 0.006 3.994 12 N -0.362 5.362 13 C 0.328 3.672 14 O -0.432 6.432 15 C -0.115 4.115 16 H 0.113 0.887 17 C -0.090 4.090 18 C -0.148 4.148 19 C -0.172 4.172 20 C -0.097 4.097 21 C -0.141 4.141 22 C -0.155 4.155 23 C -0.136 4.136 24 H 0.148 0.852 25 C 0.398 3.602 26 F -0.159 7.159 27 F -0.165 7.165 28 F -0.160 7.160 29 C -0.061 4.061 30 H 0.082 0.918 31 H 0.204 0.796 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 17.283 -2.128 9.843 20.003 hybrid contribution -0.003 1.870 0.039 1.870 sum 17.280 -0.258 9.883 19.908 Atomic orbital electron populations 1.69849 1.06058 1.27669 1.47440 1.24992 0.94903 0.98948 0.93571 0.87375 0.80404 0.84450 0.79317 1.19229 1.20916 1.18168 1.21217 0.87583 0.95722 1.52966 0.89008 1.20535 0.92630 0.87538 0.83807 1.86480 1.65734 1.25290 1.58814 1.23324 0.87396 0.97249 0.91459 1.50101 1.12114 1.34236 1.39729 1.19753 0.80974 0.84917 0.81514 1.90629 1.67710 1.27793 1.57117 1.21180 0.92697 1.01452 0.96122 0.88665 1.20923 1.00732 0.95753 0.91542 1.21530 0.94830 1.00006 0.98444 1.21950 0.97004 1.00830 0.97425 1.21052 0.99260 0.96491 0.92909 1.21434 0.95973 0.94790 1.01908 1.21606 0.96216 0.95708 1.01977 1.22483 0.96317 0.90773 1.03985 0.85223 1.20688 0.75229 0.90079 0.74216 1.93084 1.91505 1.74680 1.56600 1.93155 1.30682 1.97017 1.95645 1.93236 1.83838 1.90620 1.48305 1.24663 0.88574 0.90411 1.02492 0.91836 0.79585 0.88725 0.90547 0.89956 0.91408 0.91234 0.91317 0.90278 0.89732 0.91487 0.91020 0.91659 0.90776 0.91365 0.88540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.04 13.96 55.43 0.77 -23.26 16 2 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.86 18.61 24.34 -169.99 -4.14 14.47 16 4 H -0.27 -5.69 7.05 56.52 0.40 -5.29 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.26 -5.21 5.30 56.52 0.30 -4.92 16 7 C -0.54 -13.50 9.20 -34.44 -0.32 -13.82 16 8 H 0.09 2.47 8.06 -52.49 -0.42 2.04 16 9 C 0.20 4.34 1.06 -90.85 -0.10 4.24 16 10 O -0.55 -12.84 13.31 -35.23 -0.47 -13.31 16 11 C 0.13 2.56 8.23 -2.97 -0.02 2.53 16 12 N -0.63 -11.99 3.61 -178.32 -0.64 -12.63 16 13 C 0.54 9.62 6.28 -10.98 -0.07 9.55 16 14 O -0.55 -10.88 15.29 5.56 0.08 -10.79 16 15 C -0.09 -1.33 1.71 -91.78 -0.16 -1.49 16 16 H 0.10 1.41 6.57 -51.93 -0.34 1.07 16 17 C -0.07 -0.84 2.71 -90.62 -0.25 -1.09 16 18 C -0.11 -1.09 5.35 -26.73 -0.14 -1.23 16 19 C -0.13 -1.27 5.13 -26.73 -0.14 -1.41 16 20 C -0.08 -0.82 2.54 -90.59 -0.23 -1.05 16 21 C -0.10 -1.07 5.71 -26.71 -0.15 -1.23 16 22 C -0.12 -1.35 5.32 -26.71 -0.14 -1.49 16 23 C -0.12 -1.51 1.85 -90.59 -0.17 -1.68 16 24 H 0.13 1.88 6.76 -51.93 -0.35 1.53 16 25 C 0.45 6.01 2.39 37.16 0.09 6.10 16 26 F -0.18 -2.25 12.72 2.25 0.03 -2.22 16 27 F -0.18 -2.31 16.55 2.25 0.04 -2.28 16 28 F -0.18 -2.80 17.14 2.25 0.04 -2.76 16 29 C 0.06 1.18 7.04 -2.98 -0.02 1.16 16 30 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.35 7.85 3.31 45.56 0.15 8.00 16 32 H 0.09 1.77 8.09 -51.93 -0.42 1.35 16 33 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 0.69 7.88 -51.93 -0.41 0.28 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.78 5.47 -51.93 -0.28 0.50 16 39 H 0.08 0.80 7.65 -51.93 -0.40 0.40 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.07 1.03 6.55 -51.93 -0.34 0.69 16 44 H 0.07 1.27 6.69 -51.93 -0.35 0.92 16 45 H 0.10 1.74 8.09 -51.93 -0.42 1.32 16 LS Contribution 346.78 15.07 5.23 5.23 Total: -1.00 -28.15 346.78 -6.75 -34.90 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -5.78 Total: 11.54 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -1.91 Total: 1.11 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 0.13 Total: -35.89 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.38 Total: -24.10 kcal Atomic # 9 Polarization: -7.37 SS G_CDS: 0.10 Total: -7.26 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -4.14 Total: 14.47 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.15 -6.75 -34.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569920264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.177 kcal (2) G-P(sol) polarization free energy of solvation -28.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds