Wall clock time and date at job start Wed Apr 1 2020 04:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 120.00078 * 2 1 4 4 H 1.48505 * 109.46827 * 270.00123 * 3 2 1 5 5 H 1.48496 * 109.47069 * 29.99824 * 3 2 1 6 6 H 1.48497 * 109.47153 * 150.00203 * 3 2 1 7 7 C 1.37879 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00221 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99883 * 180.02562 * 7 2 1 10 10 O 1.42899 * 113.01615 * 311.65864 * 9 7 2 11 11 C 1.53945 * 113.73855 * 180.02562 * 9 7 2 12 12 N 1.47585 * 86.11483 * 222.04190 * 11 9 7 13 13 C 1.34778 * 134.49375 * 204.63817 * 12 11 9 14 14 O 1.21282 * 119.99697 * 355.23813 * 13 12 11 15 15 C 1.50702 * 120.00060 * 175.24359 * 13 12 11 16 16 H 1.09002 * 109.46647 * 332.44133 * 15 13 12 17 17 C 1.52996 * 109.47305 * 92.44237 * 15 13 12 18 18 C 1.53002 * 109.47244 * 180.02562 * 17 15 13 19 19 C 1.53004 * 109.46763 * 299.99985 * 18 17 15 20 20 C 1.53003 * 109.47205 * 359.97438 * 19 18 17 21 21 C 1.52999 * 109.46729 * 300.00213 * 20 19 18 22 22 C 1.52994 * 109.47255 * 59.99598 * 17 15 13 23 23 C 1.52995 * 109.46870 * 212.44203 * 15 13 12 24 24 H 1.09002 * 109.47531 * 0.02562 * 23 15 13 25 25 C 1.53008 * 109.46967 * 119.99886 * 23 15 13 26 26 F 1.39898 * 109.47148 * 53.45100 * 25 23 15 27 27 F 1.39904 * 109.47126 * 173.45109 * 25 23 15 28 28 F 1.39901 * 109.46974 * 293.45024 * 25 23 15 29 29 C 1.47578 * 91.01265 * 24.64224 * 12 11 9 30 30 H 0.97010 * 120.00129 * 359.97438 * 1 2 3 31 31 H 0.96697 * 114.00062 * 48.34506 * 10 9 7 32 32 H 1.09002 * 113.77354 * 336.34449 * 11 9 7 33 33 H 1.08996 * 113.77289 * 107.74615 * 11 9 7 34 34 H 1.09001 * 109.47015 * 300.00034 * 17 15 13 35 35 H 1.09002 * 109.46878 * 59.99791 * 18 17 15 36 36 H 1.08996 * 109.47031 * 179.97438 * 18 17 15 37 37 H 1.08996 * 109.46959 * 239.99574 * 19 18 17 38 38 H 1.09005 * 109.46945 * 120.00023 * 19 18 17 39 39 H 1.08992 * 109.47119 * 180.02562 * 20 19 18 40 40 H 1.09004 * 109.47123 * 299.99816 * 21 20 19 41 41 H 1.09004 * 109.46966 * 180.02562 * 21 20 19 42 42 H 1.09002 * 109.47354 * 179.97438 * 22 17 15 43 43 H 1.08990 * 109.47792 * 300.00197 * 22 17 15 44 44 H 1.08996 * 113.76735 * 221.05774 * 29 12 11 45 45 H 1.08997 * 113.77089 * 89.66246 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 8 4.0705 -0.3200 -0.9815 11 6 4.1312 -2.6032 0.0010 12 7 5.0916 -2.0717 0.9876 13 6 6.3433 -2.4037 1.3611 14 8 6.8743 -3.3889 0.8937 15 6 7.0829 -1.5510 2.3596 16 1 6.7181 -0.5255 2.3023 17 6 6.8492 -2.0976 3.7693 18 6 7.5996 -1.2315 4.7831 19 6 9.0965 -1.2582 4.4674 20 6 9.3440 -2.1426 3.2436 21 6 8.8587 -3.5640 3.5352 22 6 7.3611 -3.5371 3.8496 23 6 8.5797 -1.5783 2.0437 24 1 8.7556 -2.2076 1.1713 25 6 9.0655 -0.1569 1.7528 26 9 8.7060 0.6845 2.8111 27 9 10.4573 -0.1595 1.6112 28 9 8.4773 0.3041 0.5701 29 6 4.1308 -1.0305 1.4009 30 1 -0.4851 0.8401 0.0004 31 1 3.6839 0.5663 -0.9851 32 1 3.4716 -3.3734 0.4009 33 1 4.5868 -2.8828 -0.9489 34 1 5.7828 -2.0782 3.9943 35 1 7.2344 -0.2061 4.7257 36 1 7.4327 -1.6206 5.7874 37 1 9.6408 -1.6601 5.3218 38 1 9.4422 -0.2454 4.2602 39 1 10.4103 -2.1619 3.0190 40 1 9.4032 -3.9656 4.3899 41 1 9.0355 -4.1942 2.6636 42 1 7.1950 -3.9263 4.8541 43 1 6.8262 -4.1539 3.1276 44 1 4.5859 -0.0544 1.5687 45 1 3.4710 -1.3386 2.2120 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569920264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:42 Heat of formation + Delta-G solvation = -216.905511 kcal Electronic energy + Delta-G solvation = -33945.708875 eV Core-core repulsion = 29127.473780 eV Total energy + Delta-G solvation = -4818.235095 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.150 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -51.29520 -48.75315 -48.69705 -42.30309 -40.86335 -38.87084 -36.28176 -34.56539 -33.36981 -32.98759 -31.73398 -30.53559 -27.91211 -27.12296 -26.59987 -23.91934 -23.54589 -22.98737 -21.94957 -20.42444 -19.67610 -19.48489 -19.40588 -19.10071 -18.28812 -17.98671 -17.74262 -17.08455 -17.03988 -16.41644 -15.92171 -15.71521 -15.54306 -15.53550 -15.31866 -15.14888 -14.98932 -14.84336 -14.77076 -14.66199 -14.28660 -14.09916 -13.83650 -13.49807 -13.36596 -13.17120 -13.07937 -12.98970 -12.96493 -12.89147 -12.71183 -12.70690 -12.44928 -11.97179 -11.87969 -11.44144 -11.17348 -11.07816 -10.98411 -10.85491 -10.78185 -10.41835 -9.69491 -8.44412 -6.56336 1.23535 1.25697 1.37856 1.49544 1.57315 1.82348 2.15101 2.64677 2.75231 2.81249 2.93946 3.16683 3.38061 3.48889 3.52547 3.75478 3.83863 3.92992 4.01889 4.08956 4.12326 4.24115 4.32580 4.40202 4.47868 4.48842 4.52035 4.59213 4.64009 4.66310 4.71502 4.76433 4.87995 4.90345 5.15347 5.20009 5.26227 5.27604 5.33344 5.37540 5.39901 5.42292 6.01596 6.51556 6.62840 6.72723 7.02803 7.12081 8.70928 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.015172 B = 0.004182 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.116755 B = 6693.120386 C = 7276.737600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.032 3.968 3 Si 0.912 3.088 4 H -0.259 1.259 5 H -0.280 1.280 6 H -0.232 1.232 7 C -0.542 4.542 8 H 0.059 0.941 9 C 0.184 3.816 10 O -0.561 6.561 11 C 0.126 3.874 12 N -0.633 5.633 13 C 0.537 3.463 14 O -0.574 6.574 15 C -0.088 4.088 16 H 0.092 0.908 17 C -0.070 4.070 18 C -0.106 4.106 19 C -0.132 4.132 20 C -0.076 4.076 21 C -0.101 4.101 22 C -0.116 4.116 23 C -0.114 4.114 24 H 0.111 0.889 25 C 0.454 3.546 26 F -0.171 7.171 27 F -0.178 7.178 28 F -0.196 7.196 29 C 0.076 3.924 30 H 0.274 0.726 31 H 0.355 0.645 32 H 0.103 0.897 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.053 0.947 42 H 0.087 0.913 43 H 0.041 0.959 44 H 0.081 0.919 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.065 -0.184 12.477 22.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.169 4.169 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.206 1.206 6 H -0.156 1.156 7 C -0.580 4.580 8 H 0.077 0.923 9 C 0.143 3.857 10 O -0.373 6.373 11 C 0.003 3.997 12 N -0.366 5.366 13 C 0.327 3.673 14 O -0.455 6.455 15 C -0.110 4.110 16 H 0.110 0.890 17 C -0.089 4.089 18 C -0.144 4.144 19 C -0.169 4.169 20 C -0.094 4.094 21 C -0.138 4.138 22 C -0.154 4.154 23 C -0.134 4.134 24 H 0.129 0.871 25 C 0.400 3.600 26 F -0.152 7.152 27 F -0.160 7.160 28 F -0.177 7.177 29 C -0.046 4.046 30 H 0.083 0.917 31 H 0.208 0.792 32 H 0.121 0.879 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.072 0.928 42 H 0.106 0.894 43 H 0.060 0.940 44 H 0.099 0.901 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 19.731 -1.127 12.156 23.202 hybrid contribution -0.785 1.434 -0.750 1.799 sum 18.946 0.307 11.407 22.117 Atomic orbital electron populations 1.69981 1.07888 1.28787 1.49203 1.25743 0.95543 1.02569 0.93051 0.86440 0.80120 0.79829 0.79953 1.18493 1.20605 1.15615 1.21327 0.89364 0.94659 1.52660 0.92276 1.20612 0.90984 0.88683 0.85402 1.86477 1.65632 1.25646 1.59529 1.23265 0.87941 0.96578 0.91887 1.50091 1.12588 1.34222 1.39698 1.20430 0.80300 0.84986 0.81557 1.90618 1.67942 1.28975 1.57971 1.21220 0.92933 1.00372 0.96451 0.88962 1.20997 1.01102 0.96410 0.90416 1.21535 0.94717 0.99468 0.98647 1.21955 0.96908 1.00470 0.97547 1.21125 0.99519 0.96526 0.92246 1.21430 0.95492 0.94575 1.02292 1.21588 0.96588 0.94901 1.02291 1.22479 0.95865 0.90444 1.04640 0.87096 1.20691 0.75369 0.90134 0.73769 1.93099 1.91485 1.74523 1.56106 1.93164 1.30192 1.96999 1.95605 1.93204 1.84205 1.90843 1.49458 1.24457 0.88417 0.91169 1.00593 0.91662 0.79229 0.87925 0.91230 0.90291 0.91542 0.89062 0.88863 0.90594 0.88414 0.88722 0.92799 0.89422 0.93977 0.90087 0.87372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.77 13.96 21.45 0.30 -51.47 16 2 C 0.03 1.68 5.47 84.66 0.46 2.14 16 3 Si 0.91 37.66 24.34 68.60 1.67 39.33 16 4 H -0.26 -10.40 7.05 99.48 0.70 -9.69 16 5 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 6 H -0.23 -8.60 5.30 99.48 0.53 -8.07 16 7 C -0.54 -27.79 9.20 25.60 0.24 -27.56 16 8 H 0.06 3.33 8.06 -2.91 -0.02 3.31 16 9 C 0.18 8.10 1.06 -10.88 -0.01 8.09 16 10 O -0.56 -25.60 13.31 -148.98 -1.98 -27.59 16 11 C 0.13 5.10 8.23 86.48 0.71 5.81 16 12 N -0.63 -23.80 3.61 -840.31 -3.03 -26.83 16 13 C 0.54 18.89 6.28 87.66 0.55 19.44 16 14 O -0.57 -22.77 15.29 -3.04 -0.05 -22.81 16 15 C -0.09 -2.39 1.71 -11.54 -0.02 -2.41 16 16 H 0.09 2.55 6.57 -2.39 -0.02 2.54 16 17 C -0.07 -1.50 2.71 -10.80 -0.03 -1.53 16 18 C -0.11 -1.69 5.35 30.60 0.16 -1.53 16 19 C -0.13 -1.95 5.13 30.60 0.16 -1.79 16 20 C -0.08 -1.36 2.54 -10.78 -0.03 -1.39 16 21 C -0.10 -1.82 5.71 30.61 0.17 -1.65 16 22 C -0.12 -2.41 5.32 30.61 0.16 -2.24 16 23 C -0.11 -2.80 1.85 -10.78 -0.02 -2.82 16 24 H 0.11 3.18 6.76 -2.39 -0.02 3.16 16 25 C 0.45 11.28 2.39 71.98 0.17 11.45 16 26 F -0.17 -3.90 12.72 44.97 0.57 -3.32 16 27 F -0.18 -4.14 16.55 44.97 0.74 -3.39 16 28 F -0.20 -5.93 17.14 44.97 0.77 -5.16 16 29 C 0.08 2.83 7.04 86.48 0.61 3.44 16 30 H 0.27 14.34 8.31 -92.70 -0.77 13.57 16 31 H 0.35 15.25 3.31 -74.06 -0.25 15.00 16 32 H 0.10 3.94 8.09 -2.39 -0.02 3.92 16 33 H 0.07 2.88 8.14 -2.39 -0.02 2.87 16 34 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.07 1.10 7.88 -2.39 -0.02 1.08 16 36 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.08 1.21 5.47 -2.38 -0.01 1.20 16 39 H 0.10 1.54 7.65 -2.39 -0.02 1.52 16 40 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.05 1.17 8.14 -2.38 -0.02 1.16 16 42 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.04 1.14 6.55 -2.39 -0.02 1.13 16 44 H 0.08 2.80 6.69 -2.39 -0.02 2.79 16 45 H 0.11 3.75 8.09 -2.39 -0.02 3.73 16 Total: -1.00 -61.83 346.78 2.89 -58.93 By element: Atomic # 1 Polarization: 34.26 SS G_CDS: 0.61 Total: 34.87 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: 3.29 Total: 7.44 kcal Atomic # 7 Polarization: -75.56 SS G_CDS: -2.73 Total: -78.30 kcal Atomic # 8 Polarization: -48.37 SS G_CDS: -2.03 Total: -50.40 kcal Atomic # 9 Polarization: -13.96 SS G_CDS: 2.09 Total: -11.87 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 1.67 Total: 39.33 kcal Total: -61.83 2.89 -58.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569920264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.973 kcal (2) G-P(sol) polarization free energy of solvation -61.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds