Wall clock time and date at job start Wed Apr 1 2020 04:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35989 * 116.99849 * 2 1 4 4 C 1.40153 * 125.83531 * 179.97438 * 3 2 1 5 5 C 1.36075 * 107.81692 * 179.97438 * 4 3 2 6 6 N 1.39472 * 126.21520 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99844 * 359.97438 * 6 5 4 8 8 O 1.21588 * 120.00397 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99657 * 180.02562 * 7 6 5 10 10 C 1.39568 * 119.99749 * 180.02562 * 9 7 6 11 11 N 1.32273 * 119.73187 * 0.02562 * 10 9 7 12 12 C 1.31970 * 121.69401 * 179.97438 * 11 10 9 13 13 C 1.38073 * 120.94882 * 0.02699 * 12 11 10 14 14 C 1.38784 * 119.35826 * 359.97124 * 13 12 11 15 15 C 1.38784 * 118.45006 * 359.73525 * 14 13 12 16 16 O 1.35986 * 120.49919 * 180.26220 * 15 14 13 17 17 C 1.42897 * 117.00174 * 0.29325 * 16 15 14 18 18 C 1.52998 * 109.47528 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.47197 * 180.02562 * 18 17 16 20 20 H 1.07994 * 120.00182 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00060 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99983 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00275 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47540 * 89.99742 * 23 21 19 25 25 H 1.48499 * 109.47203 * 209.99783 * 23 21 19 26 26 H 1.48497 * 109.47179 * 329.99853 * 23 21 19 27 27 N 1.35802 * 107.56413 * 0.02562 * 5 4 3 28 28 H 0.97000 * 126.04222 * 180.02562 * 27 5 4 29 29 N 1.31111 * 125.83763 * 359.97392 * 3 2 1 30 30 H 1.09000 * 109.47032 * 300.00482 * 1 2 3 31 31 H 1.09000 * 109.46565 * 60.00488 * 1 2 3 32 32 H 1.08992 * 109.46836 * 179.97438 * 1 2 3 33 33 H 1.07999 * 126.09354 * 0.23929 * 4 3 2 34 34 H 0.96994 * 120.00020 * 180.02562 * 6 5 4 35 35 H 0.96994 * 120.00201 * 0.02562 * 9 7 6 36 36 H 1.07994 * 119.52572 * 179.97438 * 12 11 10 37 37 H 1.07998 * 120.31636 * 179.97438 * 13 12 11 38 38 H 1.08000 * 120.77567 * 180.02562 * 14 13 12 39 39 H 1.09006 * 109.46955 * 300.00392 * 17 16 15 40 40 H 1.09002 * 109.47414 * 59.99562 * 17 16 15 41 41 H 1.08999 * 109.46479 * 299.99628 * 18 17 16 42 42 H 1.08997 * 109.47395 * 59.99670 * 18 17 16 43 43 H 0.96995 * 120.00359 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4313 1.4270 0.0005 5 6 3.6437 2.7711 -0.0003 6 7 4.8838 3.4093 0.0004 7 6 6.0171 2.6799 0.0025 8 8 5.9585 1.4654 0.0033 9 7 7.2155 3.2968 0.0037 10 6 8.3891 2.5414 0.0053 11 7 8.3191 1.2205 0.0051 12 6 9.4037 0.4687 0.0061 13 6 10.6619 1.0374 0.0079 14 6 10.7837 2.4199 0.0080 15 6 9.6262 3.1856 0.0007 16 8 9.6970 4.5436 -0.0048 17 6 11.0023 5.1252 -0.0092 18 6 10.8812 6.6503 -0.0144 19 6 12.2578 7.2636 -0.0197 20 1 13.1316 6.6290 -0.0189 21 6 12.4016 8.6348 -0.0254 22 7 11.3375 9.4076 -0.0268 23 14 14.1079 9.3949 -0.0313 24 1 14.5579 9.5907 -1.4329 25 1 14.0677 10.7068 0.6635 26 1 15.0546 8.4917 0.6709 27 7 2.4288 3.3779 -0.0006 28 1 2.2688 4.3346 -0.0015 29 7 1.4478 2.3782 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 4.1940 0.6624 -0.0027 34 1 4.9306 4.3781 0.0001 35 1 7.2622 4.2656 0.0034 36 1 9.3058 -0.6068 0.0064 37 1 11.5426 0.4124 0.0091 38 1 11.7565 2.8890 0.0090 39 1 11.5448 4.8071 0.8812 40 1 11.5419 4.8001 -0.8987 41 1 10.3387 6.9686 -0.9046 42 1 10.3418 6.9751 0.8754 43 1 11.4386 10.3723 -0.0313 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599774682.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:29 Heat of formation + Delta-G solvation = 36.881049 kcal Electronic energy + Delta-G solvation = -28890.990537 eV Core-core repulsion = 24554.369601 eV Total energy + Delta-G solvation = -4336.620936 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.80962 -40.94990 -39.72097 -38.32297 -37.86304 -35.23942 -34.87316 -33.53235 -31.70474 -31.02447 -30.71842 -29.58545 -28.68914 -27.44571 -25.49634 -24.20408 -23.01731 -22.21136 -21.77313 -20.98923 -20.45467 -19.43362 -18.68549 -17.87560 -17.35829 -16.94803 -16.40477 -16.27486 -16.09242 -15.98901 -15.66860 -15.48773 -14.83924 -14.62164 -14.54562 -14.37300 -14.10045 -13.99624 -13.62873 -13.54482 -12.91428 -12.45174 -12.21437 -12.08761 -12.02076 -11.84578 -11.14264 -11.12656 -11.03355 -10.96621 -10.72778 -10.71307 -10.36599 -10.10941 -9.83670 -9.47357 -9.31325 -9.19081 -8.89102 -8.57118 -8.39461 -7.74743 -6.22983 -4.27966 1.12948 1.38469 1.60918 1.63239 2.50633 2.64669 3.07250 3.17816 3.19268 3.25425 3.27547 3.45023 3.72490 3.95456 4.29642 4.49170 4.59627 4.89499 4.95675 5.01400 5.02733 5.13929 5.14213 5.25262 5.27947 5.40066 5.42396 5.71084 5.79693 5.84174 5.96393 6.07498 6.19641 6.33829 6.42563 6.47905 6.59836 6.89522 7.19033 7.27654 7.36454 7.46243 7.52458 7.59141 7.79882 8.05572 8.09031 8.30389 8.77226 9.37357 10.88394 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.014965 B = 0.002019 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.597046 B =13864.458645 C =15709.287030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.288 6.288 3 C 0.279 3.721 4 C -0.279 4.279 5 C 0.358 3.642 6 N -0.661 5.661 7 C 0.705 3.295 8 O -0.497 6.497 9 N -0.652 5.652 10 C 0.341 3.659 11 N -0.440 5.440 12 C 0.078 3.922 13 C -0.157 4.157 14 C -0.146 4.146 15 C 0.070 3.930 16 O -0.317 6.317 17 C 0.066 3.934 18 C 0.027 3.973 19 C -0.529 4.529 20 H 0.059 0.941 21 C 0.062 3.938 22 N -0.889 5.889 23 Si 0.899 3.101 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.272 1.272 27 N -0.483 5.483 28 H 0.440 0.560 29 N -0.340 5.340 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.099 0.901 33 H 0.183 0.817 34 H 0.412 0.588 35 H 0.423 0.577 36 H 0.159 0.841 37 H 0.136 0.864 38 H 0.146 0.854 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.242 -14.729 0.076 20.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.191 6.191 3 C 0.074 3.926 4 C -0.310 4.310 5 C 0.136 3.864 6 N -0.312 5.312 7 C 0.404 3.596 8 O -0.365 6.365 9 N -0.302 5.302 10 C 0.108 3.892 11 N -0.155 5.155 12 C -0.078 4.078 13 C -0.179 4.179 14 C -0.173 4.173 15 C 0.018 3.982 16 O -0.230 6.230 17 C -0.008 4.008 18 C -0.011 4.011 19 C -0.567 4.567 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.527 5.527 23 Si 0.727 3.273 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.197 1.197 27 N -0.203 5.203 28 H 0.285 0.715 29 N -0.182 5.182 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.117 0.883 33 H 0.200 0.800 34 H 0.248 0.752 35 H 0.261 0.739 36 H 0.176 0.824 37 H 0.154 0.846 38 H 0.164 0.836 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.310 -15.683 0.079 22.627 hybrid contribution 2.470 2.285 -0.015 3.365 sum -13.839 -13.398 0.064 19.263 Atomic orbital electron populations 1.22972 0.77772 1.03494 1.02065 1.86328 1.21948 1.21544 1.89313 1.20340 0.91447 0.85010 0.95798 1.20882 0.93960 0.94232 1.21975 1.17445 0.79360 0.90262 0.99370 1.41885 1.02017 1.10267 1.77041 1.15536 0.79480 0.85488 0.79132 1.91010 1.84073 1.10245 1.51138 1.42257 1.02146 1.10512 1.75264 1.17360 0.82255 0.88106 1.01455 1.67571 1.32451 1.02190 1.13242 1.22424 0.86825 0.99762 0.98832 1.21926 0.99215 0.94603 1.02119 1.21611 0.98130 0.94423 1.03104 1.19503 0.92713 0.85286 1.00676 1.86091 1.34851 1.14402 1.87620 1.23409 0.79699 0.97754 0.99938 1.19126 0.98245 0.84839 0.98844 1.20944 0.91552 0.91659 1.52559 0.92296 1.24978 0.97196 0.97170 0.94746 1.69956 1.28679 1.04556 1.49504 0.86477 0.83867 0.78708 0.78292 1.20451 1.21013 1.19720 1.45713 1.00652 1.08474 1.65466 0.71460 1.77435 1.10676 0.95031 1.35058 0.92504 0.92514 0.88261 0.79972 0.75241 0.73880 0.82402 0.84646 0.83603 0.92857 0.92852 0.95377 0.95366 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.69 101.05 1.08 1.34 16 2 O -0.29 -3.50 10.58 -19.71 -0.21 -3.71 16 3 C 0.28 3.68 7.88 -17.14 -0.14 3.55 16 4 C -0.28 -3.84 9.67 -39.64 -0.38 -4.23 16 5 C 0.36 4.07 8.10 -152.69 -1.24 2.83 16 6 N -0.66 -6.47 5.43 -15.73 -0.09 -6.55 16 7 C 0.70 9.37 8.49 -86.91 -0.74 8.63 16 8 O -0.50 -8.21 11.72 5.29 0.06 -8.14 16 9 N -0.65 -8.47 5.40 -15.67 -0.08 -8.55 16 10 C 0.34 5.19 7.45 -154.44 -1.15 4.04 16 11 N -0.44 -6.83 7.87 -12.23 -0.10 -6.93 16 12 C 0.08 0.98 11.17 -17.55 -0.20 0.79 16 13 C -0.16 -1.80 10.10 -39.44 -0.40 -2.20 16 14 C -0.15 -1.96 9.14 -39.18 -0.36 -2.32 16 15 C 0.07 1.07 6.72 -38.92 -0.26 0.81 16 16 O -0.32 -5.39 9.39 -19.70 -0.18 -5.58 16 17 C 0.07 1.23 4.70 37.16 0.17 1.40 16 18 C 0.03 0.63 5.34 -27.88 -0.15 0.48 16 19 C -0.53 -13.74 9.11 -34.44 -0.31 -14.05 16 20 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 22 N -0.89 -24.95 13.29 55.43 0.74 -24.22 16 23 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 27 N -0.48 -4.66 7.39 31.24 0.23 -4.43 16 28 H 0.44 2.62 8.96 -182.62 -1.64 0.98 16 29 N -0.34 -4.12 12.08 30.53 0.37 -3.75 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.18 2.84 5.82 -52.49 -0.31 2.54 16 34 H 0.41 2.48 8.84 -40.82 -0.36 2.12 16 35 H 0.42 4.62 8.06 -40.82 -0.33 4.29 16 36 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.15 1.81 6.44 -52.49 -0.34 1.47 16 39 H 0.05 0.95 7.69 -51.93 -0.40 0.55 16 40 H 0.05 0.95 7.71 -51.93 -0.40 0.55 16 41 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 374.41 15.07 5.64 5.64 Total: -1.00 -33.94 374.41 -9.07 -43.01 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -6.27 Total: 5.35 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -4.16 Total: 2.64 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: 1.07 Total: -54.43 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.33 Total: -17.43 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.94 -9.07 -43.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599774682.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.891 kcal (2) G-P(sol) polarization free energy of solvation -33.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds