Wall clock time and date at job start Wed Apr 1 2020 04:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35989 * 116.99849 * 2 1 4 4 C 1.40153 * 125.83531 * 179.97438 * 3 2 1 5 5 C 1.36075 * 107.81692 * 179.97438 * 4 3 2 6 6 N 1.39472 * 126.21520 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99844 * 359.97438 * 6 5 4 8 8 O 1.21588 * 120.00397 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99657 * 180.02562 * 7 6 5 10 10 C 1.39568 * 119.99749 * 180.02562 * 9 7 6 11 11 N 1.32273 * 119.73187 * 0.02562 * 10 9 7 12 12 C 1.31970 * 121.69401 * 179.97438 * 11 10 9 13 13 C 1.38073 * 120.94882 * 0.02699 * 12 11 10 14 14 C 1.38784 * 119.35826 * 359.97124 * 13 12 11 15 15 C 1.38784 * 118.45006 * 359.73525 * 14 13 12 16 16 O 1.35986 * 120.49919 * 180.26220 * 15 14 13 17 17 C 1.42897 * 117.00174 * 0.29325 * 16 15 14 18 18 C 1.52998 * 109.47528 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.47197 * 180.02562 * 18 17 16 20 20 H 1.07994 * 120.00182 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00060 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99983 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00275 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47540 * 89.99742 * 23 21 19 25 25 H 1.48499 * 109.47203 * 209.99783 * 23 21 19 26 26 H 1.48497 * 109.47179 * 329.99853 * 23 21 19 27 27 N 1.35802 * 107.56413 * 0.02562 * 5 4 3 28 28 H 0.97000 * 126.04222 * 180.02562 * 27 5 4 29 29 N 1.31111 * 125.83763 * 359.97392 * 3 2 1 30 30 H 1.09000 * 109.47032 * 300.00482 * 1 2 3 31 31 H 1.09000 * 109.46565 * 60.00488 * 1 2 3 32 32 H 1.08992 * 109.46836 * 179.97438 * 1 2 3 33 33 H 1.07999 * 126.09354 * 0.23929 * 4 3 2 34 34 H 0.96994 * 120.00020 * 180.02562 * 6 5 4 35 35 H 0.96994 * 120.00201 * 0.02562 * 9 7 6 36 36 H 1.07994 * 119.52572 * 179.97438 * 12 11 10 37 37 H 1.07998 * 120.31636 * 179.97438 * 13 12 11 38 38 H 1.08000 * 120.77567 * 180.02562 * 14 13 12 39 39 H 1.09006 * 109.46955 * 300.00392 * 17 16 15 40 40 H 1.09002 * 109.47414 * 59.99562 * 17 16 15 41 41 H 1.08999 * 109.46479 * 299.99628 * 18 17 16 42 42 H 1.08997 * 109.47395 * 59.99670 * 18 17 16 43 43 H 0.96995 * 120.00359 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4313 1.4270 0.0005 5 6 3.6437 2.7711 -0.0003 6 7 4.8838 3.4093 0.0004 7 6 6.0171 2.6799 0.0025 8 8 5.9585 1.4654 0.0033 9 7 7.2155 3.2968 0.0037 10 6 8.3891 2.5414 0.0053 11 7 8.3191 1.2205 0.0051 12 6 9.4037 0.4687 0.0061 13 6 10.6619 1.0374 0.0079 14 6 10.7837 2.4199 0.0080 15 6 9.6262 3.1856 0.0007 16 8 9.6970 4.5436 -0.0048 17 6 11.0023 5.1252 -0.0092 18 6 10.8812 6.6503 -0.0144 19 6 12.2578 7.2636 -0.0197 20 1 13.1316 6.6290 -0.0189 21 6 12.4016 8.6348 -0.0254 22 7 11.3375 9.4076 -0.0268 23 14 14.1079 9.3949 -0.0313 24 1 14.5579 9.5907 -1.4329 25 1 14.0677 10.7068 0.6635 26 1 15.0546 8.4917 0.6709 27 7 2.4288 3.3779 -0.0006 28 1 2.2688 4.3346 -0.0015 29 7 1.4478 2.3782 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 4.1940 0.6624 -0.0027 34 1 4.9306 4.3781 0.0001 35 1 7.2622 4.2656 0.0034 36 1 9.3058 -0.6068 0.0064 37 1 11.5426 0.4124 0.0091 38 1 11.7565 2.8890 0.0090 39 1 11.5448 4.8071 0.8812 40 1 11.5419 4.8001 -0.8987 41 1 10.3387 6.9686 -0.9046 42 1 10.3418 6.9751 0.8754 43 1 11.4386 10.3723 -0.0313 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599774682.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:28 Heat of formation + Delta-G solvation = 11.626331 kcal Electronic energy + Delta-G solvation = -28892.085663 eV Core-core repulsion = 24554.369601 eV Total energy + Delta-G solvation = -4337.716062 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.76927 -41.99794 -40.78314 -39.26509 -39.03045 -36.23106 -35.93338 -35.43819 -32.87412 -32.28008 -31.91454 -30.76200 -29.71136 -28.15561 -27.14964 -25.38859 -24.23915 -23.33165 -22.66979 -22.46379 -21.50290 -20.36578 -19.78434 -19.11925 -18.46942 -18.00150 -17.81313 -17.38260 -17.28034 -17.08401 -16.63835 -16.63572 -16.45305 -15.76529 -15.53519 -15.34047 -15.15151 -15.00147 -14.77068 -14.54052 -14.34222 -14.12996 -13.62521 -13.26767 -12.86761 -12.79323 -12.74169 -12.67293 -12.43097 -12.04683 -11.95359 -11.76265 -11.67646 -11.61080 -11.45328 -11.36618 -10.59289 -10.40123 -10.27095 -9.78051 -9.38380 -8.83367 -8.24809 -6.36598 0.10297 0.32116 0.65482 0.67567 1.43829 1.44164 1.55017 1.63621 1.68460 2.05777 2.12321 2.29785 2.45311 2.90936 2.91203 3.10911 3.52765 3.65823 3.88592 3.92728 4.15324 4.32907 4.33194 4.36712 4.40643 4.40900 4.43389 4.49843 4.73257 4.78035 4.81298 4.96923 5.11422 5.21698 5.33435 5.37739 5.47814 5.53477 5.60182 5.76011 5.98510 6.09877 6.34092 6.37132 6.50237 6.62346 6.78512 7.03887 7.29166 7.33420 8.87537 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.014965 B = 0.002019 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.597046 B =13864.458645 C =15709.287030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.305 6.305 3 C 0.270 3.730 4 C -0.309 4.309 5 C 0.367 3.633 6 N -0.642 5.642 7 C 0.704 3.296 8 O -0.530 6.530 9 N -0.647 5.647 10 C 0.326 3.674 11 N -0.470 5.470 12 C 0.076 3.924 13 C -0.143 4.143 14 C -0.147 4.147 15 C 0.046 3.954 16 O -0.327 6.327 17 C 0.083 3.917 18 C 0.029 3.971 19 C -0.544 4.544 20 H 0.071 0.929 21 C 0.005 3.995 22 N -0.928 5.928 23 Si 0.968 3.032 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.260 1.260 27 N -0.463 5.463 28 H 0.458 0.542 29 N -0.344 5.344 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.127 0.873 33 H 0.161 0.839 34 H 0.431 0.569 35 H 0.430 0.570 36 H 0.186 0.814 37 H 0.175 0.825 38 H 0.158 0.842 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.003 0.997 42 H 0.003 0.997 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.091 -15.453 0.082 20.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.209 6.209 3 C 0.065 3.935 4 C -0.341 4.341 5 C 0.143 3.857 6 N -0.295 5.295 7 C 0.403 3.597 8 O -0.400 6.400 9 N -0.298 5.298 10 C 0.094 3.906 11 N -0.184 5.184 12 C -0.081 4.081 13 C -0.163 4.163 14 C -0.174 4.174 15 C -0.004 4.004 16 O -0.241 6.241 17 C 0.009 3.991 18 C -0.008 4.008 19 C -0.582 4.582 20 H 0.089 0.911 21 C -0.194 4.194 22 N -0.567 5.567 23 Si 0.792 3.208 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.184 1.184 27 N -0.185 5.185 28 H 0.307 0.693 29 N -0.187 5.187 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.145 0.855 33 H 0.178 0.822 34 H 0.271 0.729 35 H 0.270 0.730 36 H 0.203 0.797 37 H 0.193 0.807 38 H 0.175 0.825 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.021 0.979 42 H 0.021 0.979 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.186 -16.366 0.085 22.326 hybrid contribution 2.052 2.388 -0.017 3.149 sum -13.134 -13.977 0.067 19.180 Atomic orbital electron populations 1.23242 0.75743 1.05460 1.02295 1.86301 1.24057 1.21348 1.89223 1.20427 0.91351 0.85595 0.96117 1.20793 0.94119 0.95005 1.24206 1.17305 0.80075 0.89905 0.98432 1.41592 1.00742 1.11068 1.76055 1.15638 0.80030 0.85239 0.78776 1.90998 1.84632 1.11804 1.52583 1.42214 1.01790 1.10790 1.74974 1.17526 0.82743 0.88354 1.01998 1.67632 1.34076 1.02453 1.14288 1.23037 0.86747 1.00988 0.97283 1.22291 1.00145 0.94040 0.99846 1.21899 0.97870 0.95368 1.02246 1.19629 0.93653 0.84366 1.02800 1.86015 1.33662 1.15857 1.88524 1.22951 0.80679 0.94482 1.00970 1.18948 0.96850 0.88634 0.96382 1.21416 0.92815 0.92218 1.51739 0.91116 1.25923 1.01156 0.97922 0.94413 1.70087 1.31029 1.04828 1.50802 0.85395 0.79145 0.77718 0.78494 1.19838 1.21044 1.18395 1.45667 0.99564 1.09118 1.64131 0.69316 1.77392 1.11103 0.95028 1.35152 0.92234 0.92244 0.85516 0.82181 0.72934 0.73034 0.79699 0.80737 0.82474 0.91750 0.91743 0.97887 0.97860 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.69 113.37 1.21 1.63 16 2 O -0.31 -7.51 10.58 -93.43 -0.99 -8.50 16 3 C 0.27 7.21 7.88 85.27 0.67 7.88 16 4 C -0.31 -8.80 9.67 22.23 0.21 -8.59 16 5 C 0.37 8.28 8.10 131.14 1.06 9.34 16 6 N -0.64 -12.37 5.43 -321.94 -1.75 -14.12 16 7 C 0.70 18.98 8.49 179.05 1.52 20.50 16 8 O -0.53 -18.03 11.72 -3.99 -0.05 -18.08 16 9 N -0.65 -17.00 5.40 -321.76 -1.74 -18.73 16 10 C 0.33 9.88 7.45 132.99 0.99 10.87 16 11 N -0.47 -14.35 7.87 -192.59 -1.52 -15.86 16 12 C 0.08 1.76 11.17 84.63 0.95 2.70 16 13 C -0.14 -2.82 10.10 22.36 0.23 -2.59 16 14 C -0.15 -3.64 9.14 22.53 0.21 -3.43 16 15 C 0.05 1.39 6.72 22.70 0.15 1.54 16 16 O -0.33 -11.12 9.39 -93.39 -0.88 -12.00 16 17 C 0.08 3.06 4.70 71.98 0.34 3.40 16 18 C 0.03 1.40 5.34 29.85 0.16 1.56 16 19 C -0.54 -28.17 9.11 25.60 0.23 -27.94 16 20 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 21 C 0.00 0.25 5.46 84.65 0.46 0.71 16 22 N -0.93 -52.97 13.29 21.45 0.28 -52.68 16 23 Si 0.97 41.08 29.54 68.60 2.03 43.10 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 25 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 26 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 27 N -0.46 -8.47 7.39 -55.08 -0.41 -8.88 16 28 H 0.46 4.67 8.96 -213.34 -1.91 2.75 16 29 N -0.34 -8.13 12.08 -170.58 -2.06 -10.19 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 32 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.16 5.33 5.82 -2.91 -0.02 5.32 16 34 H 0.43 4.78 8.84 -92.71 -0.82 3.97 16 35 H 0.43 9.55 8.06 -92.71 -0.75 8.80 16 36 H 0.19 3.09 8.06 -2.91 -0.02 3.07 16 37 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 38 H 0.16 3.48 6.44 -2.91 -0.02 3.46 16 39 H 0.06 2.20 7.69 -2.38 -0.02 2.18 16 40 H 0.06 2.20 7.71 -2.39 -0.02 2.18 16 41 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 42 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 43 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -75.07 374.41 -1.04 -76.11 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: -2.37 Total: 22.24 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: 8.40 Total: 17.60 kcal Atomic # 7 Polarization: -113.29 SS G_CDS: -7.18 Total: -120.47 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -1.91 Total: -38.58 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.10 kcal Total: -75.07 -1.04 -76.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599774682.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.731 kcal (2) G-P(sol) polarization free energy of solvation -75.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds