Wall clock time and date at job start Wed Apr 1 2020 04:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00140 * 2 1 4 4 H 1.48493 * 109.47251 * 239.99919 * 3 2 1 5 5 H 1.48506 * 109.47132 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46961 * 119.99690 * 3 2 1 7 7 C 1.37875 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00238 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99890 * 0.02562 * 7 2 1 10 10 O 1.42905 * 109.47353 * 179.97438 * 9 7 2 11 11 C 1.42892 * 114.00030 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46931 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.46802 * 65.00050 * 12 11 10 14 14 C 1.46903 * 110.99862 * 176.85129 * 13 12 11 15 15 H 1.09007 * 109.47199 * 12.45405 * 14 13 12 16 16 C 1.53002 * 109.47417 * 132.44996 * 14 13 12 17 17 C 1.50702 * 109.47050 * 298.03554 * 16 14 13 18 18 C 1.38231 * 119.99860 * 269.72084 * 17 16 14 19 19 C 1.38232 * 119.99816 * 180.32682 * 18 17 16 20 20 C 1.38236 * 120.00449 * 359.95087 * 19 18 17 21 21 C 1.38240 * 119.99406 * 0.02562 * 20 19 18 22 22 C 1.38229 * 120.00171 * 359.97438 * 21 20 19 23 23 C 1.52998 * 109.47497 * 252.45306 * 14 13 12 24 24 H 1.08997 * 109.46947 * 293.59032 * 23 14 13 25 25 O 1.42903 * 109.46632 * 53.58218 * 23 14 13 26 26 C 1.52991 * 109.47509 * 173.58365 * 23 14 13 27 27 F 1.39904 * 109.47097 * 66.35898 * 26 23 14 28 28 F 1.39898 * 109.47499 * 186.35820 * 26 23 14 29 29 F 1.39906 * 109.47280 * 306.36030 * 26 23 14 30 30 H 0.97008 * 119.99934 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.47277 * 59.99977 * 9 7 2 32 32 H 1.08997 * 109.46950 * 299.99721 * 9 7 2 33 33 H 1.08996 * 109.47507 * 59.99995 * 11 10 9 34 34 H 1.09003 * 109.47198 * 299.99908 * 11 10 9 35 35 H 1.08998 * 109.47547 * 305.00053 * 12 11 10 36 36 H 1.09003 * 109.46764 * 184.99334 * 12 11 10 37 37 H 1.00897 * 111.00693 * 52.90278 * 13 12 11 38 38 H 1.08994 * 109.47121 * 178.03107 * 16 14 13 39 39 H 1.09009 * 109.46536 * 58.03174 * 16 14 13 40 40 H 1.07997 * 120.00144 * 0.27408 * 18 17 16 41 41 H 1.07997 * 120.00085 * 179.97438 * 19 18 17 42 42 H 1.07996 * 120.00359 * 180.02562 * 20 19 18 43 43 H 1.08003 * 119.99536 * 179.97438 * 21 20 19 44 44 H 1.08004 * 119.99954 * 179.97438 * 22 21 20 45 45 H 0.96691 * 114.00512 * 292.90077 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6480 -5.9562 -0.0006 13 7 3.4081 -5.8883 1.2546 14 6 4.4099 -6.9607 1.3221 15 1 4.5127 -7.4241 0.3408 16 6 5.7560 -6.3748 1.7529 17 6 6.2195 -5.3733 0.7267 18 6 7.0056 -5.7837 -0.3337 19 6 7.4364 -4.8639 -1.2714 20 6 7.0803 -3.5338 -1.1492 21 6 6.2938 -3.1235 -0.0890 22 6 5.8630 -4.0433 0.8486 23 6 3.9629 -8.0131 2.3387 24 1 3.9698 -7.5785 3.3383 25 8 2.6410 -8.4524 2.0194 26 6 4.9211 -9.2049 2.2939 27 9 6.1835 -8.8055 2.7459 28 9 4.4334 -10.2266 3.1157 29 9 5.0230 -9.6723 0.9792 30 1 -0.4850 0.8401 0.0004 31 1 0.6247 -2.5571 -0.8897 32 1 0.6241 -2.5567 0.8903 33 1 0.9452 -4.9822 -0.8902 34 1 0.9446 -4.9827 0.8897 35 1 3.3215 -5.7952 -0.8424 36 1 2.1819 -6.9374 -0.0905 37 1 2.7917 -5.9188 2.0528 38 1 6.4906 -7.1757 1.8368 39 1 5.6450 -5.8810 2.7183 40 1 7.2839 -6.8228 -0.4292 41 1 8.0509 -5.1844 -2.0996 42 1 7.4165 -2.8152 -1.8820 43 1 6.0159 -2.0842 0.0067 44 1 5.2488 -3.7227 1.6772 45 1 1.9624 -7.7731 2.1337 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603142812.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:07 Heat of formation + Delta-G solvation = -223.060375 kcal Electronic energy + Delta-G solvation = -31918.158580 eV Core-core repulsion = 27099.656591 eV Total energy + Delta-G solvation = -4818.501990 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.46629 -48.00614 -47.86747 -39.58821 -38.45291 -36.87259 -35.39386 -33.18188 -32.47332 -30.80203 -30.50023 -28.62601 -27.21315 -26.32846 -23.96704 -22.36054 -22.23984 -21.81561 -21.72678 -20.61617 -19.27427 -18.83288 -18.07609 -17.64346 -16.42125 -16.40925 -16.05424 -15.66580 -15.20681 -15.05983 -14.85662 -14.74986 -14.57336 -14.52616 -14.32396 -14.25726 -14.06926 -14.01894 -13.74438 -13.66568 -13.12254 -12.98904 -12.86239 -12.74525 -12.43471 -12.05726 -11.81351 -11.61851 -11.49333 -11.24565 -10.98733 -10.85845 -10.77459 -10.63523 -10.59005 -10.43613 -10.00867 -9.11561 -8.82177 -8.59468 -8.47061 -8.27980 -8.15806 -6.11110 -4.12067 1.68390 1.80576 2.17944 3.14828 3.31094 3.34264 3.37523 3.40180 3.55563 3.94828 4.05873 4.28984 4.33827 4.36934 4.46956 4.81581 5.03511 5.09582 5.12290 5.25697 5.28505 5.34557 5.44551 5.45435 5.59068 5.61449 5.80979 5.88384 5.93799 6.02315 6.04723 6.22525 6.36555 6.43328 6.71311 6.78399 6.84055 6.94744 7.03722 7.08914 7.25678 7.38694 7.42154 7.80036 8.16211 8.59851 9.01719 9.52727 11.00529 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.012349 B = 0.003229 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.760844 B = 8670.043884 C =10235.881666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.509 4.509 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.376 6.376 11 C 0.064 3.936 12 C 0.063 3.937 13 N -0.652 5.652 14 C 0.062 3.938 15 H 0.092 0.908 16 C -0.085 4.085 17 C -0.073 4.073 18 C -0.128 4.128 19 C -0.130 4.130 20 C -0.125 4.125 21 C -0.111 4.111 22 C -0.069 4.069 23 C 0.038 3.962 24 H 0.107 0.893 25 O -0.544 6.544 26 C 0.467 3.533 27 F -0.169 7.169 28 F -0.177 7.177 29 F -0.174 7.174 30 H 0.264 0.736 31 H 0.001 0.999 32 H 0.002 0.998 33 H 0.041 0.959 34 H 0.033 0.967 35 H 0.081 0.919 36 H 0.042 0.958 37 H 0.335 0.665 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.121 0.879 44 H 0.126 0.874 45 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.782 -17.703 4.488 21.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.547 4.547 8 H 0.084 0.916 9 C 0.121 3.879 10 O -0.295 6.295 11 C -0.014 4.014 12 C -0.066 4.066 13 N -0.284 5.284 14 C -0.049 4.049 15 H 0.110 0.890 16 C -0.122 4.122 17 C -0.073 4.073 18 C -0.146 4.146 19 C -0.148 4.148 20 C -0.143 4.143 21 C -0.129 4.129 22 C -0.087 4.087 23 C -0.024 4.024 24 H 0.124 0.876 25 O -0.352 6.352 26 C 0.412 3.588 27 F -0.150 7.150 28 F -0.158 7.158 29 F -0.155 7.155 30 H 0.073 0.927 31 H 0.018 0.982 32 H 0.020 0.980 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.100 0.900 36 H 0.060 0.940 37 H 0.154 0.846 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.139 0.861 44 H 0.144 0.856 45 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 11.570 -17.643 4.112 21.495 hybrid contribution -0.860 0.484 0.166 1.001 sum 10.709 -17.159 4.277 20.674 Atomic orbital electron populations 1.69950 1.06107 1.27173 1.50753 1.24929 0.94921 0.99341 0.95276 0.86447 0.79372 0.82127 0.78839 1.20033 1.21242 1.20004 1.20985 0.93988 0.89250 1.50479 0.91566 1.20163 0.88830 0.83954 0.94998 1.87979 1.34417 1.12137 1.94992 1.22230 0.93679 0.86543 0.98943 1.22180 0.95808 0.96065 0.92512 1.60441 1.18610 1.44732 1.04615 1.22334 0.94435 0.89447 0.98676 0.88978 1.20967 0.94726 0.98251 0.98306 1.19447 0.97672 0.94280 0.95895 1.20905 0.99540 0.98849 0.95307 1.20956 1.01191 0.93590 0.99092 1.21100 0.99094 0.95836 0.98266 1.21236 0.96893 1.00245 0.94507 1.21023 0.96390 0.92080 0.99200 1.23629 0.84526 0.91519 1.02758 0.87565 1.86491 1.14893 1.42535 1.91249 1.20084 0.80436 0.84215 0.74079 1.93144 1.42617 1.90145 1.89132 1.93210 1.87607 1.62335 1.72642 1.93207 1.96236 1.89839 1.36263 0.92680 0.98155 0.98035 0.94094 0.94883 0.90017 0.93981 0.84586 0.89697 0.90269 0.87138 0.86970 0.86804 0.86078 0.85589 0.75341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.51 -14.52 9.43 -34.44 -0.32 -14.84 16 8 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 9 C 0.19 5.15 5.69 36.01 0.20 5.35 16 10 O -0.38 -8.45 10.27 -35.23 -0.36 -8.81 16 11 C 0.06 1.07 6.19 37.16 0.23 1.30 16 12 C 0.06 0.82 5.67 -3.82 -0.02 0.80 16 13 N -0.65 -7.47 5.29 -106.72 -0.56 -8.04 16 14 C 0.06 0.62 1.91 -67.71 -0.13 0.49 16 15 H 0.09 1.03 6.90 -51.92 -0.36 0.68 16 16 C -0.08 -0.88 4.62 -27.88 -0.13 -1.01 16 17 C -0.07 -0.95 4.91 -104.62 -0.51 -1.47 16 18 C -0.13 -1.62 9.70 -39.59 -0.38 -2.00 16 19 C -0.13 -1.68 10.05 -39.58 -0.40 -2.08 16 20 C -0.12 -1.77 10.05 -39.58 -0.40 -2.17 16 21 C -0.11 -1.74 10.05 -39.58 -0.40 -2.14 16 22 C -0.07 -1.04 9.22 -39.59 -0.37 -1.41 16 23 C 0.04 0.32 2.52 -26.74 -0.07 0.25 16 24 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 25 O -0.54 -4.71 12.69 -35.23 -0.45 -5.16 16 26 C 0.47 4.53 2.83 37.15 0.11 4.64 16 27 F -0.17 -1.56 14.25 2.25 0.03 -1.53 16 28 F -0.18 -1.89 17.16 2.25 0.04 -1.85 16 29 F -0.17 -1.92 16.44 2.25 0.04 -1.88 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 32 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.03 0.51 8.13 -51.93 -0.42 0.08 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.04 0.45 7.74 -51.93 -0.40 0.05 16 37 H 0.33 3.23 7.17 -39.29 -0.28 2.95 16 38 H 0.08 0.81 5.33 -51.93 -0.28 0.54 16 39 H 0.08 0.78 8.09 -51.92 -0.42 0.36 16 40 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 43 H 0.12 1.94 8.06 -52.48 -0.42 1.52 16 44 H 0.13 1.98 8.06 -52.48 -0.42 1.56 16 45 H 0.40 2.26 7.77 45.56 0.35 2.61 16 LS Contribution 386.80 15.07 5.83 5.83 Total: -1.00 -31.99 386.80 -7.99 -39.97 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -5.58 Total: 3.59 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -2.69 Total: -12.79 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: 0.17 Total: -33.84 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.81 Total: -13.97 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.11 Total: -5.26 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.99 -7.99 -39.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603142812.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.086 kcal (2) G-P(sol) polarization free energy of solvation -31.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds