Wall clock time and date at job start Wed Apr 1 2020 04:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00140 * 2 1 4 4 H 1.48493 * 109.47251 * 239.99919 * 3 2 1 5 5 H 1.48506 * 109.47132 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46961 * 119.99690 * 3 2 1 7 7 C 1.37875 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00238 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99890 * 0.02562 * 7 2 1 10 10 O 1.42905 * 109.47353 * 179.97438 * 9 7 2 11 11 C 1.42892 * 114.00030 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46931 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.46802 * 65.00050 * 12 11 10 14 14 C 1.46903 * 110.99862 * 176.85129 * 13 12 11 15 15 H 1.09007 * 109.47199 * 12.45405 * 14 13 12 16 16 C 1.53002 * 109.47417 * 132.44996 * 14 13 12 17 17 C 1.50702 * 109.47050 * 298.03554 * 16 14 13 18 18 C 1.38231 * 119.99860 * 269.72084 * 17 16 14 19 19 C 1.38232 * 119.99816 * 180.32682 * 18 17 16 20 20 C 1.38236 * 120.00449 * 359.95087 * 19 18 17 21 21 C 1.38240 * 119.99406 * 0.02562 * 20 19 18 22 22 C 1.38229 * 120.00171 * 359.97438 * 21 20 19 23 23 C 1.52998 * 109.47497 * 252.45306 * 14 13 12 24 24 H 1.08997 * 109.46947 * 293.59032 * 23 14 13 25 25 O 1.42903 * 109.46632 * 53.58218 * 23 14 13 26 26 C 1.52991 * 109.47509 * 173.58365 * 23 14 13 27 27 F 1.39904 * 109.47097 * 66.35898 * 26 23 14 28 28 F 1.39898 * 109.47499 * 186.35820 * 26 23 14 29 29 F 1.39906 * 109.47280 * 306.36030 * 26 23 14 30 30 H 0.97008 * 119.99934 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.47277 * 59.99977 * 9 7 2 32 32 H 1.08997 * 109.46950 * 299.99721 * 9 7 2 33 33 H 1.08996 * 109.47507 * 59.99995 * 11 10 9 34 34 H 1.09003 * 109.47198 * 299.99908 * 11 10 9 35 35 H 1.08998 * 109.47547 * 305.00053 * 12 11 10 36 36 H 1.09003 * 109.46764 * 184.99334 * 12 11 10 37 37 H 1.00897 * 111.00693 * 52.90278 * 13 12 11 38 38 H 1.08994 * 109.47121 * 178.03107 * 16 14 13 39 39 H 1.09009 * 109.46536 * 58.03174 * 16 14 13 40 40 H 1.07997 * 120.00144 * 0.27408 * 18 17 16 41 41 H 1.07997 * 120.00085 * 179.97438 * 19 18 17 42 42 H 1.07996 * 120.00359 * 180.02562 * 20 19 18 43 43 H 1.08003 * 119.99536 * 179.97438 * 21 20 19 44 44 H 1.08004 * 119.99954 * 179.97438 * 22 21 20 45 45 H 0.96691 * 114.00512 * 292.90077 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6480 -5.9562 -0.0006 13 7 3.4081 -5.8883 1.2546 14 6 4.4099 -6.9607 1.3221 15 1 4.5127 -7.4241 0.3408 16 6 5.7560 -6.3748 1.7529 17 6 6.2195 -5.3733 0.7267 18 6 7.0056 -5.7837 -0.3337 19 6 7.4364 -4.8639 -1.2714 20 6 7.0803 -3.5338 -1.1492 21 6 6.2938 -3.1235 -0.0890 22 6 5.8630 -4.0433 0.8486 23 6 3.9629 -8.0131 2.3387 24 1 3.9698 -7.5785 3.3383 25 8 2.6410 -8.4524 2.0194 26 6 4.9211 -9.2049 2.2939 27 9 6.1835 -8.8055 2.7459 28 9 4.4334 -10.2266 3.1157 29 9 5.0230 -9.6723 0.9792 30 1 -0.4850 0.8401 0.0004 31 1 0.6247 -2.5571 -0.8897 32 1 0.6241 -2.5567 0.8903 33 1 0.9452 -4.9822 -0.8902 34 1 0.9446 -4.9827 0.8897 35 1 3.3215 -5.7952 -0.8424 36 1 2.1819 -6.9374 -0.0905 37 1 2.7917 -5.9188 2.0528 38 1 6.4906 -7.1757 1.8368 39 1 5.6450 -5.8810 2.7183 40 1 7.2839 -6.8228 -0.4292 41 1 8.0509 -5.1844 -2.0996 42 1 7.4165 -2.8152 -1.8820 43 1 6.0159 -2.0842 0.0067 44 1 5.2488 -3.7227 1.6772 45 1 1.9624 -7.7731 2.1337 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603142812.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:07 Heat of formation + Delta-G solvation = -244.470342 kcal Electronic energy + Delta-G solvation = -31919.086986 eV Core-core repulsion = 27099.656591 eV Total energy + Delta-G solvation = -4819.430395 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -51.22187 -48.75081 -48.65469 -40.49926 -39.40462 -38.44058 -36.35341 -34.93859 -33.92030 -31.73439 -31.57663 -29.99939 -28.70009 -27.63117 -24.82290 -24.41444 -23.34279 -22.93115 -22.67706 -21.57600 -20.00499 -19.60822 -18.88135 -18.53047 -18.36458 -17.46817 -17.39041 -16.96089 -16.49244 -16.19824 -16.00100 -15.93692 -15.59247 -15.47535 -15.36725 -15.11182 -15.07352 -14.85056 -14.80293 -14.71012 -14.39046 -14.12845 -14.04739 -13.76323 -13.61520 -13.55654 -13.09007 -12.85771 -12.75915 -12.58080 -12.41958 -12.40014 -12.21865 -11.83976 -11.76107 -11.61154 -11.38137 -11.20895 -10.81976 -10.12440 -9.64981 -9.50299 -9.24126 -8.28654 -6.38865 0.61628 0.71625 1.40320 1.44026 1.47227 1.52128 2.36144 2.46051 2.65338 2.80516 3.05598 3.05730 3.12243 3.29608 3.45314 3.65125 3.79918 4.13018 4.14951 4.21348 4.27861 4.31651 4.38526 4.42196 4.49994 4.58251 4.67649 4.71196 4.80077 4.88355 4.97428 5.03359 5.06320 5.25074 5.33416 5.36416 5.59822 5.72083 5.82382 5.87799 5.98588 6.03179 6.19086 6.31867 6.45274 6.62681 6.92380 7.33175 8.83363 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.012349 B = 0.003229 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.760844 B = 8670.043884 C =10235.881666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.008 3.992 3 Si 0.974 3.026 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.537 4.537 8 H 0.060 0.940 9 C 0.211 3.789 10 O -0.388 6.388 11 C 0.054 3.946 12 C 0.080 3.920 13 N -0.665 5.665 14 C 0.072 3.928 15 H 0.083 0.917 16 C -0.082 4.082 17 C -0.071 4.071 18 C -0.131 4.131 19 C -0.131 4.131 20 C -0.137 4.137 21 C -0.138 4.138 22 C -0.085 4.085 23 C 0.049 3.951 24 H 0.132 0.868 25 O -0.553 6.553 26 C 0.465 3.535 27 F -0.166 7.166 28 F -0.183 7.183 29 F -0.183 7.183 30 H 0.269 0.731 31 H -0.023 1.023 32 H -0.015 1.015 33 H 0.040 0.960 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.347 0.653 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.135 0.865 41 H 0.138 0.862 42 H 0.125 0.875 43 H 0.104 0.896 44 H 0.112 0.888 45 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.768 -18.796 4.930 22.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.190 4.190 3 Si 0.797 3.203 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.574 4.574 8 H 0.078 0.922 9 C 0.136 3.864 10 O -0.308 6.308 11 C -0.023 4.023 12 C -0.049 4.049 13 N -0.299 5.299 14 C -0.039 4.039 15 H 0.101 0.899 16 C -0.120 4.120 17 C -0.071 4.071 18 C -0.149 4.149 19 C -0.149 4.149 20 C -0.155 4.155 21 C -0.157 4.157 22 C -0.104 4.104 23 C -0.014 4.014 24 H 0.149 0.851 25 O -0.364 6.364 26 C 0.410 3.590 27 F -0.148 7.148 28 F -0.164 7.164 29 F -0.165 7.165 30 H 0.077 0.923 31 H -0.005 1.005 32 H 0.003 0.997 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.168 0.832 38 H 0.116 0.884 39 H 0.104 0.896 40 H 0.152 0.848 41 H 0.156 0.844 42 H 0.143 0.857 43 H 0.122 0.878 44 H 0.130 0.870 45 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 12.550 -18.756 4.562 23.024 hybrid contribution -1.179 0.714 0.021 1.379 sum 11.371 -18.041 4.584 21.813 Atomic orbital electron populations 1.70057 1.07651 1.28434 1.51033 1.25850 0.95822 1.03050 0.94270 0.85372 0.78222 0.77380 0.79317 1.19284 1.20226 1.18982 1.21315 0.93968 0.90800 1.51353 0.92151 1.19734 0.88600 0.85077 0.92976 1.87946 1.34209 1.13594 1.95030 1.22584 0.95324 0.84710 0.99692 1.21946 0.94468 0.95807 0.92633 1.60324 1.19117 1.45995 1.04428 1.22174 0.93641 0.89243 0.98837 0.89889 1.21012 0.95238 0.97970 0.97793 1.19688 0.97062 0.93823 0.96552 1.21249 0.98849 1.00022 0.94776 1.21292 1.00842 0.92959 0.99757 1.21286 0.99113 0.97031 0.98101 1.21290 0.98538 0.99823 0.96009 1.20988 0.97144 0.93215 0.99016 1.23537 0.84230 0.90272 1.03346 0.85096 1.86475 1.15167 1.43406 1.91335 1.20265 0.80767 0.84392 0.73595 1.93146 1.42525 1.90042 1.89040 1.93199 1.87711 1.62712 1.72777 1.93191 1.96303 1.90031 1.36938 0.92253 1.00498 0.99703 0.94179 0.93232 0.92166 0.90869 0.83229 0.88351 0.89567 0.84758 0.84425 0.85696 0.87779 0.87002 0.73847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.60 13.29 21.45 0.28 -55.32 16 2 C 0.01 0.47 5.46 84.65 0.46 0.94 16 3 Si 0.97 44.21 29.54 68.60 2.03 46.23 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.54 -31.38 9.43 25.60 0.24 -31.14 16 8 H 0.06 3.51 7.81 -2.91 -0.02 3.49 16 9 C 0.21 11.54 5.69 71.24 0.41 11.94 16 10 O -0.39 -17.86 10.27 -148.98 -1.53 -19.39 16 11 C 0.05 1.79 6.19 71.98 0.45 2.23 16 12 C 0.08 1.99 5.67 86.30 0.49 2.47 16 13 N -0.67 -14.24 5.29 -491.54 -2.60 -16.84 16 14 C 0.07 1.28 1.91 44.91 0.09 1.36 16 15 H 0.08 1.67 6.90 -2.38 -0.02 1.66 16 16 C -0.08 -1.55 4.62 29.85 0.14 -1.41 16 17 C -0.07 -1.79 4.91 -19.87 -0.10 -1.88 16 18 C -0.13 -3.08 9.70 22.27 0.22 -2.86 16 19 C -0.13 -3.19 10.05 22.27 0.22 -2.96 16 20 C -0.14 -3.89 10.05 22.27 0.22 -3.67 16 21 C -0.14 -4.53 10.05 22.27 0.22 -4.31 16 22 C -0.09 -2.64 9.22 22.27 0.21 -2.43 16 23 C 0.05 0.68 2.52 30.59 0.08 0.76 16 24 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 25 O -0.55 -8.02 12.69 -148.98 -1.89 -9.91 16 26 C 0.46 7.90 2.83 71.98 0.20 8.10 16 27 F -0.17 -2.65 14.25 44.97 0.64 -2.01 16 28 F -0.18 -3.51 17.16 44.97 0.77 -2.74 16 29 F -0.18 -3.65 16.44 44.97 0.74 -2.91 16 30 H 0.27 14.97 8.31 -92.70 -0.77 14.19 16 31 H -0.02 -1.32 8.14 -2.39 -0.02 -1.33 16 32 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 33 H 0.04 1.32 8.14 -2.39 -0.02 1.31 16 34 H 0.05 1.47 8.13 -2.39 -0.02 1.45 16 35 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.07 1.39 7.74 -2.39 -0.02 1.37 16 37 H 0.35 5.97 7.17 -89.70 -0.64 5.33 16 38 H 0.10 1.61 5.33 -2.39 -0.01 1.60 16 39 H 0.09 1.52 8.09 -2.38 -0.02 1.50 16 40 H 0.13 2.49 8.06 -2.91 -0.02 2.47 16 41 H 0.14 2.60 8.06 -2.91 -0.02 2.57 16 42 H 0.13 3.12 8.06 -2.91 -0.02 3.09 16 43 H 0.10 3.61 8.06 -2.91 -0.02 3.59 16 44 H 0.11 3.67 8.06 -2.91 -0.02 3.65 16 45 H 0.41 3.43 7.77 -74.06 -0.58 2.85 16 Total: -1.00 -69.95 386.80 1.79 -68.16 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -0.19 Total: 17.59 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: 3.54 Total: -22.87 kcal Atomic # 7 Polarization: -69.85 SS G_CDS: -2.32 Total: -72.16 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -3.42 Total: -29.30 kcal Atomic # 9 Polarization: -9.81 SS G_CDS: 2.15 Total: -7.66 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -69.95 1.79 -68.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603142812.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.311 kcal (2) G-P(sol) polarization free energy of solvation -69.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -246.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds