Wall clock time and date at job start Wed Apr 1 2020 04:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31655 * 1 3 3 Si 1.86799 * 119.99768 * 2 1 4 4 H 1.48506 * 109.46828 * 239.99752 * 3 2 1 5 5 H 1.48497 * 109.47575 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47398 * 120.00339 * 3 2 1 7 7 C 1.38687 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00163 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99716 * 0.02562 * 7 2 1 10 10 C 1.76201 * 99.99836 * 174.96618 * 9 7 2 11 11 C 1.39002 * 120.12520 * 5.61299 * 10 9 7 12 12 C 1.38081 * 119.97808 * 180.27768 * 11 10 9 13 13 C 1.38396 * 120.22743 * 359.70389 * 12 11 10 14 14 C 1.38223 * 120.25268 * 359.97438 * 13 12 11 15 15 C 1.38683 * 120.01591 * 0.02562 * 14 13 12 16 16 N 1.39938 * 120.11244 * 179.97438 * 15 14 13 17 17 C 1.34772 * 120.00244 * 335.24671 * 16 15 14 18 18 O 1.21301 * 119.99927 * 354.26010 * 17 16 15 19 19 C 1.50696 * 119.99977 * 174.53258 * 17 16 15 20 20 N 1.46910 * 109.46933 * 179.72751 * 19 17 16 21 21 C 1.50185 * 110.99574 * 289.67804 * 20 19 17 22 22 C 1.50738 * 102.14320 * 213.03726 * 21 20 19 23 23 H 1.09000 * 110.05326 * 290.78466 * 22 21 20 24 24 C 1.50127 * 126.53558 * 154.91370 * 22 21 20 25 25 N 1.49700 * 104.73956 * 216.19211 * 24 22 21 26 26 C 1.50189 * 107.64762 * 7.45268 * 25 24 22 27 27 C 1.50759 * 102.14494 * 25.29216 * 26 25 24 28 28 H 1.09000 * 109.77164 * 69.15190 * 27 26 25 29 29 C 1.49704 * 110.99808 * 170.00373 * 20 19 17 30 30 H 0.96999 * 119.99872 * 0.02562 * 1 2 3 31 31 H 1.08006 * 120.00870 * 359.97438 * 11 10 9 32 32 H 1.07995 * 119.88732 * 179.72354 * 12 11 10 33 33 H 1.07997 * 119.87442 * 180.02562 * 13 12 11 34 34 H 1.08002 * 119.99201 * 180.02562 * 14 13 12 35 35 H 0.97000 * 119.99522 * 155.23876 * 16 15 14 36 36 H 1.09002 * 109.47390 * 299.71965 * 19 17 16 37 37 H 1.08998 * 109.47384 * 59.72521 * 19 17 16 38 38 H 1.09001 * 110.87556 * 331.20460 * 21 20 19 39 39 H 1.09006 * 110.86588 * 94.87636 * 21 20 19 40 40 H 1.08995 * 110.38434 * 335.00876 * 24 22 21 41 41 H 1.09003 * 110.38301 * 97.37507 * 24 22 21 42 42 H 1.00900 * 111.00277 * 129.11438 * 25 24 22 43 43 H 1.08997 * 110.86509 * 267.12754 * 26 25 24 44 44 H 1.09003 * 110.86570 * 143.45659 * 26 25 24 45 45 H 1.09005 * 110.37746 * 233.03117 * 29 20 19 46 46 H 1.08997 * 110.38164 * 355.39355 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3166 0.0000 0.0000 3 14 2.2505 1.6178 0.0000 4 1 3.1043 1.6964 -1.2125 5 1 1.2855 2.7465 -0.0006 6 1 3.1043 1.6965 1.2124 7 6 2.0100 -1.2010 0.0005 8 1 3.0900 -1.2010 0.0001 9 16 1.1290 -2.7270 0.0005 10 6 2.4731 -3.8562 -0.1509 11 6 3.7825 -3.3915 -0.1119 12 6 4.8334 -4.2784 -0.2367 13 6 4.5883 -5.6313 -0.3946 14 6 3.2901 -6.1046 -0.4280 15 6 2.2268 -5.2229 -0.3037 16 7 0.9117 -5.6998 -0.3378 17 6 0.6314 -6.8597 -0.9642 18 8 1.4975 -7.4374 -1.5867 19 6 -0.7594 -7.4358 -0.8964 20 7 -0.8075 -8.6905 -1.6591 21 6 -0.7001 -8.4280 -3.1340 22 6 -1.5544 -9.5260 -3.7144 23 1 -1.0708 -10.4920 -3.5695 24 6 -2.2572 -9.5049 -5.0409 25 7 -3.5448 -10.2299 -4.8012 26 6 -3.6524 -10.4915 -3.3262 27 6 -2.7985 -9.3928 -2.7461 28 1 -3.2859 -8.4293 -2.8951 29 6 -2.0955 -9.4148 -1.4197 30 1 -0.4850 0.8400 -0.0004 31 1 3.9778 -2.3364 0.0110 32 1 5.8501 -3.9152 -0.2106 33 1 5.4146 -6.3200 -0.4912 34 1 3.1036 -7.1613 -0.5510 35 1 0.2017 -5.1955 0.0895 36 1 -1.0209 -7.6326 0.1434 37 1 -1.4682 -6.7250 -1.3211 38 1 -1.1050 -7.4475 -3.3845 39 1 0.3325 -8.5205 -3.4706 40 1 -2.4516 -8.4783 -5.3513 41 1 -1.6635 -10.0240 -5.7933 42 1 -4.3308 -9.6897 -5.1308 43 1 -3.2471 -11.4717 -3.0752 44 1 -4.6851 -10.3993 -2.9898 45 1 -1.9015 -10.4417 -1.1097 46 1 -2.6887 -8.8957 -0.6669 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609144400.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:11 Heat of formation + Delta-G solvation = 36.170666 kcal Electronic energy + Delta-G solvation = -27476.669255 eV Core-core repulsion = 23686.310730 eV Total energy + Delta-G solvation = -3790.358526 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.96077 -39.91967 -37.80704 -36.15230 -34.34105 -32.78304 -31.33025 -30.71778 -30.32258 -29.08016 -26.74658 -26.49753 -25.89432 -23.00307 -22.33993 -21.67808 -20.65700 -20.39312 -19.94652 -18.41839 -17.37087 -16.75823 -16.54502 -16.15546 -15.88742 -15.51907 -15.20544 -15.06872 -14.69431 -14.31577 -14.13234 -13.96439 -13.50398 -13.40491 -13.01979 -12.94056 -12.89029 -12.74831 -12.43103 -11.99938 -11.75563 -11.69977 -11.69549 -11.65513 -11.33543 -11.23164 -11.11087 -11.01430 -10.47370 -10.40844 -10.12616 -9.84971 -9.57636 -9.34091 -9.03234 -8.82260 -8.67213 -8.51103 -7.65315 -6.55791 -6.54353 -4.26711 1.85325 2.08447 2.89133 2.96830 3.09489 3.11702 3.13842 3.32442 3.54281 3.70432 3.85970 3.95654 4.32241 4.45618 4.67960 4.73828 4.80852 4.87688 5.01628 5.02852 5.06180 5.08955 5.16680 5.19739 5.23276 5.38495 5.45450 5.48649 5.64739 5.67009 5.69005 5.70510 5.88998 5.93617 6.00409 6.16513 6.20870 6.22494 6.51128 6.56668 6.61391 6.85240 6.91275 6.91432 7.11749 7.21853 7.42863 7.68568 7.78180 8.10272 8.40865 8.92940 10.51598 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.013863 B = 0.002488 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.234249 B =11252.907715 C =12572.938359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.077 3.923 3 Si 0.924 3.076 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.544 4.544 8 H 0.095 0.905 9 S 0.027 5.973 10 C -0.107 4.107 11 C -0.128 4.128 12 C -0.119 4.119 13 C -0.145 4.145 14 C -0.112 4.112 15 C 0.129 3.871 16 N -0.659 5.659 17 C 0.512 3.488 18 O -0.509 6.509 19 C 0.029 3.971 20 N -0.504 5.504 21 C 0.065 3.935 22 C -0.129 4.129 23 H 0.091 0.909 24 C 0.063 3.937 25 N -0.684 5.684 26 C 0.067 3.933 27 C -0.168 4.168 28 H 0.072 0.928 29 C 0.061 3.939 30 H 0.274 0.726 31 H 0.138 0.862 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.137 0.863 35 H 0.410 0.590 36 H 0.107 0.893 37 H 0.067 0.933 38 H 0.049 0.951 39 H 0.098 0.902 40 H 0.053 0.947 41 H 0.083 0.917 42 H 0.338 0.662 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.085 -16.397 -3.463 17.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.133 4.133 3 Si 0.750 3.250 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.195 1.195 7 C -0.691 4.691 8 H 0.112 0.888 9 S 0.280 5.720 10 C -0.224 4.224 11 C -0.154 4.154 12 C -0.139 4.139 13 C -0.169 4.169 14 C -0.134 4.134 15 C 0.027 3.973 16 N -0.303 5.303 17 C 0.298 3.702 18 O -0.383 6.383 19 C -0.103 4.103 20 N -0.228 5.228 21 C -0.063 4.063 22 C -0.149 4.149 23 H 0.109 0.891 24 C -0.066 4.066 25 N -0.312 5.312 26 C -0.062 4.062 27 C -0.188 4.188 28 H 0.090 0.910 29 C -0.066 4.066 30 H 0.083 0.917 31 H 0.155 0.845 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.155 0.845 35 H 0.247 0.753 36 H 0.125 0.875 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.116 0.884 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.153 0.847 43 H 0.102 0.898 44 H 0.089 0.911 45 H 0.104 0.896 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.428 -17.684 -3.816 19.199 hybrid contribution 0.581 3.129 0.273 3.194 sum -5.847 -14.554 -3.543 16.080 Atomic orbital electron populations 1.69986 1.06080 1.28366 1.45608 1.25085 0.95173 0.99615 0.93397 0.86106 0.79317 0.80291 0.79326 1.19490 1.20586 1.19451 1.23210 0.95847 0.90382 1.59636 0.88783 1.82999 1.06249 0.97888 1.84855 1.22438 1.00625 0.95510 1.03871 1.21283 0.90985 1.00660 1.02501 1.20963 0.98204 0.93480 1.01295 1.20770 0.95887 0.95308 1.04925 1.21097 0.91252 0.99793 1.01228 1.17186 0.83445 0.90961 1.05743 1.43402 1.08894 1.23159 1.54864 1.20446 0.90456 0.80542 0.78756 1.90643 1.48050 1.59634 1.39987 1.22210 0.94535 0.92426 1.01147 1.64999 1.32522 1.18951 1.06353 1.22340 1.01334 0.95929 0.86654 1.22483 0.95933 1.01412 0.95032 0.89115 1.21817 0.90936 0.97495 0.96378 1.63313 1.04202 1.48874 1.14778 1.22129 0.98992 0.97997 0.87070 1.23140 0.97611 1.00652 0.97443 0.90984 1.22052 0.88748 1.00486 0.95333 0.91652 0.84453 0.87124 0.87000 0.84504 0.75336 0.87457 0.91467 0.93304 0.88414 0.92835 0.89860 0.84687 0.89843 0.91129 0.89555 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.67 13.22 55.48 0.73 -22.94 16 2 C 0.08 2.03 5.49 -17.46 -0.10 1.93 16 3 Si 0.92 20.08 29.55 -169.99 -5.02 15.05 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.54 -14.29 9.08 30.90 0.28 -14.01 16 8 H 0.09 2.38 4.81 -52.49 -0.25 2.12 16 9 S 0.03 0.64 20.37 -107.50 -2.19 -1.55 16 10 C -0.11 -2.34 6.12 -38.75 -0.24 -2.57 16 11 C -0.13 -2.68 9.26 -39.36 -0.36 -3.05 16 12 C -0.12 -2.14 10.03 -39.58 -0.40 -2.54 16 13 C -0.15 -2.54 10.04 -39.53 -0.40 -2.93 16 14 C -0.11 -2.10 8.71 -39.42 -0.34 -2.44 16 15 C 0.13 2.53 6.44 -83.44 -0.54 1.99 16 16 N -0.66 -11.05 5.16 -9.70 -0.05 -11.10 16 17 C 0.51 7.92 7.44 -10.99 -0.08 7.84 16 18 O -0.51 -9.24 12.35 5.54 0.07 -9.17 16 19 C 0.03 0.33 5.17 -4.97 -0.03 0.30 16 20 N -0.50 -5.72 4.97 -233.83 -1.16 -6.88 16 21 C 0.06 0.74 5.61 -3.11 -0.02 0.72 16 22 C -0.13 -1.20 2.91 -90.31 -0.26 -1.46 16 23 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 24 C 0.06 0.53 7.44 -3.69 -0.03 0.50 16 25 N -0.68 -5.42 7.57 -111.79 -0.85 -6.26 16 26 C 0.07 0.48 7.44 -3.10 -0.02 0.46 16 27 C -0.17 -1.34 2.91 -90.30 -0.26 -1.60 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 C 0.06 0.52 6.70 -3.68 -0.02 0.50 16 30 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.14 2.96 4.93 -52.48 -0.26 2.70 16 32 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.14 2.55 5.79 -52.49 -0.30 2.24 16 35 H 0.41 6.37 7.66 -40.82 -0.31 6.06 16 36 H 0.11 1.00 7.98 -51.93 -0.41 0.58 16 37 H 0.07 0.70 7.86 -51.93 -0.41 0.29 16 38 H 0.05 0.57 7.70 -51.93 -0.40 0.17 16 39 H 0.10 1.32 7.50 -51.93 -0.39 0.93 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.34 2.23 8.94 -39.29 -0.35 1.88 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.07 0.48 7.57 -51.93 -0.39 0.09 16 LS Contribution 377.47 15.07 5.69 5.69 Total: -1.00 -30.18 377.47 -12.02 -42.21 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -6.42 Total: 11.33 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -2.82 Total: -16.38 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: -1.32 Total: -47.18 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.07 Total: -9.17 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: 0.64 SS G_CDS: -2.19 Total: -1.55 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.18 -12.02 -42.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609144400.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.376 kcal (2) G-P(sol) polarization free energy of solvation -30.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds