Wall clock time and date at job start Wed Apr 1 2020 04:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31655 * 1 3 3 Si 1.86799 * 119.99768 * 2 1 4 4 H 1.48506 * 109.46828 * 239.99752 * 3 2 1 5 5 H 1.48497 * 109.47575 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47398 * 120.00339 * 3 2 1 7 7 C 1.38687 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00163 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99716 * 0.02562 * 7 2 1 10 10 C 1.76201 * 99.99836 * 174.96618 * 9 7 2 11 11 C 1.39002 * 120.12520 * 5.61299 * 10 9 7 12 12 C 1.38081 * 119.97808 * 180.27768 * 11 10 9 13 13 C 1.38396 * 120.22743 * 359.70389 * 12 11 10 14 14 C 1.38223 * 120.25268 * 359.97438 * 13 12 11 15 15 C 1.38683 * 120.01591 * 0.02562 * 14 13 12 16 16 N 1.39938 * 120.11244 * 179.97438 * 15 14 13 17 17 C 1.34772 * 120.00244 * 335.24671 * 16 15 14 18 18 O 1.21301 * 119.99927 * 354.26010 * 17 16 15 19 19 C 1.50696 * 119.99977 * 174.53258 * 17 16 15 20 20 N 1.46910 * 109.46933 * 179.72751 * 19 17 16 21 21 C 1.50185 * 110.99574 * 289.67804 * 20 19 17 22 22 C 1.50738 * 102.14320 * 213.03726 * 21 20 19 23 23 H 1.09000 * 110.05326 * 290.78466 * 22 21 20 24 24 C 1.50127 * 126.53558 * 154.91370 * 22 21 20 25 25 N 1.49700 * 104.73956 * 216.19211 * 24 22 21 26 26 C 1.50189 * 107.64762 * 7.45268 * 25 24 22 27 27 C 1.50759 * 102.14494 * 25.29216 * 26 25 24 28 28 H 1.09000 * 109.77164 * 69.15190 * 27 26 25 29 29 C 1.49704 * 110.99808 * 170.00373 * 20 19 17 30 30 H 0.96999 * 119.99872 * 0.02562 * 1 2 3 31 31 H 1.08006 * 120.00870 * 359.97438 * 11 10 9 32 32 H 1.07995 * 119.88732 * 179.72354 * 12 11 10 33 33 H 1.07997 * 119.87442 * 180.02562 * 13 12 11 34 34 H 1.08002 * 119.99201 * 180.02562 * 14 13 12 35 35 H 0.97000 * 119.99522 * 155.23876 * 16 15 14 36 36 H 1.09002 * 109.47390 * 299.71965 * 19 17 16 37 37 H 1.08998 * 109.47384 * 59.72521 * 19 17 16 38 38 H 1.09001 * 110.87556 * 331.20460 * 21 20 19 39 39 H 1.09006 * 110.86588 * 94.87636 * 21 20 19 40 40 H 1.08995 * 110.38434 * 335.00876 * 24 22 21 41 41 H 1.09003 * 110.38301 * 97.37507 * 24 22 21 42 42 H 1.00900 * 111.00277 * 129.11438 * 25 24 22 43 43 H 1.08997 * 110.86509 * 267.12754 * 26 25 24 44 44 H 1.09003 * 110.86570 * 143.45659 * 26 25 24 45 45 H 1.09005 * 110.37746 * 233.03117 * 29 20 19 46 46 H 1.08997 * 110.38164 * 355.39355 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3166 0.0000 0.0000 3 14 2.2505 1.6178 0.0000 4 1 3.1043 1.6964 -1.2125 5 1 1.2855 2.7465 -0.0006 6 1 3.1043 1.6965 1.2124 7 6 2.0100 -1.2010 0.0005 8 1 3.0900 -1.2010 0.0001 9 16 1.1290 -2.7270 0.0005 10 6 2.4731 -3.8562 -0.1509 11 6 3.7825 -3.3915 -0.1119 12 6 4.8334 -4.2784 -0.2367 13 6 4.5883 -5.6313 -0.3946 14 6 3.2901 -6.1046 -0.4280 15 6 2.2268 -5.2229 -0.3037 16 7 0.9117 -5.6998 -0.3378 17 6 0.6314 -6.8597 -0.9642 18 8 1.4975 -7.4374 -1.5867 19 6 -0.7594 -7.4358 -0.8964 20 7 -0.8075 -8.6905 -1.6591 21 6 -0.7001 -8.4280 -3.1340 22 6 -1.5544 -9.5260 -3.7144 23 1 -1.0708 -10.4920 -3.5695 24 6 -2.2572 -9.5049 -5.0409 25 7 -3.5448 -10.2299 -4.8012 26 6 -3.6524 -10.4915 -3.3262 27 6 -2.7985 -9.3928 -2.7461 28 1 -3.2859 -8.4293 -2.8951 29 6 -2.0955 -9.4148 -1.4197 30 1 -0.4850 0.8400 -0.0004 31 1 3.9778 -2.3364 0.0110 32 1 5.8501 -3.9152 -0.2106 33 1 5.4146 -6.3200 -0.4912 34 1 3.1036 -7.1613 -0.5510 35 1 0.2017 -5.1955 0.0895 36 1 -1.0209 -7.6326 0.1434 37 1 -1.4682 -6.7250 -1.3211 38 1 -1.1050 -7.4475 -3.3845 39 1 0.3325 -8.5205 -3.4706 40 1 -2.4516 -8.4783 -5.3513 41 1 -1.6635 -10.0240 -5.7933 42 1 -4.3308 -9.6897 -5.1308 43 1 -3.2471 -11.4717 -3.0752 44 1 -4.6851 -10.3993 -2.9898 45 1 -1.9015 -10.4417 -1.1097 46 1 -2.6887 -8.8957 -0.6669 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609144400.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:11 Heat of formation + Delta-G solvation = 15.096829 kcal Electronic energy + Delta-G solvation = -27477.583086 eV Core-core repulsion = 23686.310730 eV Total energy + Delta-G solvation = -3791.272356 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.85427 -41.12114 -39.20702 -36.98990 -35.73762 -34.73342 -32.26125 -31.87178 -31.42371 -30.39081 -27.88518 -27.49328 -27.38660 -24.15211 -23.74708 -22.86695 -21.44786 -21.17987 -21.12111 -20.14702 -18.57830 -18.20577 -17.61764 -17.34843 -17.03923 -16.75979 -16.63236 -16.06403 -15.76169 -15.49577 -15.40845 -15.07409 -14.74560 -14.63003 -14.55488 -14.28636 -13.86203 -13.59364 -13.53359 -13.37137 -12.99299 -12.89737 -12.88475 -12.79785 -12.53324 -12.41421 -12.32412 -12.12805 -11.76832 -11.68804 -11.40189 -11.35845 -11.18539 -10.69790 -10.65311 -10.35925 -9.70434 -9.33348 -9.15593 -8.50410 -8.34907 -6.24413 0.37300 0.52747 1.25597 1.39347 1.43564 1.56589 1.62412 1.96421 2.17026 2.77816 2.85284 2.88542 2.99055 3.13326 3.16774 3.58729 3.71598 3.98892 4.06339 4.08085 4.22241 4.24577 4.27444 4.31702 4.38758 4.45385 4.51197 4.58320 4.65561 4.69110 4.71384 4.75164 4.85437 4.97646 5.02374 5.04140 5.08382 5.29432 5.30728 5.42894 5.48606 5.58484 5.63369 5.68464 5.71999 5.80608 6.11447 6.21172 6.37787 6.46214 6.95006 7.12048 8.58103 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.013863 B = 0.002488 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.234249 B =11252.907715 C =12572.938359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.027 3.973 3 Si 0.990 3.010 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.262 1.262 7 C -0.564 4.564 8 H 0.096 0.904 9 S -0.014 6.014 10 C -0.130 4.130 11 C -0.143 4.143 12 C -0.118 4.118 13 C -0.129 4.129 14 C -0.123 4.123 15 C 0.130 3.870 16 N -0.660 5.660 17 C 0.510 3.490 18 O -0.537 6.537 19 C 0.036 3.964 20 N -0.521 5.521 21 C 0.067 3.933 22 C -0.127 4.127 23 H 0.080 0.920 24 C 0.065 3.935 25 N -0.690 5.690 26 C 0.071 3.929 27 C -0.154 4.154 28 H 0.070 0.930 29 C 0.063 3.937 30 H 0.276 0.724 31 H 0.125 0.875 32 H 0.145 0.855 33 H 0.149 0.851 34 H 0.140 0.860 35 H 0.415 0.585 36 H 0.134 0.866 37 H 0.081 0.919 38 H 0.043 0.957 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.080 0.920 42 H 0.347 0.653 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.874 -17.426 -3.273 18.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.179 4.179 3 Si 0.812 3.188 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.711 4.711 8 H 0.114 0.886 9 S 0.237 5.763 10 C -0.247 4.247 11 C -0.168 4.168 12 C -0.138 4.138 13 C -0.152 4.152 14 C -0.145 4.145 15 C 0.028 3.972 16 N -0.305 5.305 17 C 0.299 3.701 18 O -0.413 6.413 19 C -0.095 4.095 20 N -0.246 5.246 21 C -0.060 4.060 22 C -0.147 4.147 23 H 0.099 0.901 24 C -0.064 4.064 25 N -0.319 5.319 26 C -0.058 4.058 27 C -0.175 4.175 28 H 0.088 0.912 29 C -0.064 4.064 30 H 0.085 0.915 31 H 0.143 0.857 32 H 0.162 0.838 33 H 0.167 0.833 34 H 0.158 0.842 35 H 0.252 0.748 36 H 0.152 0.848 37 H 0.099 0.901 38 H 0.062 0.938 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.098 0.902 42 H 0.163 0.837 43 H 0.100 0.900 44 H 0.107 0.893 45 H 0.110 0.890 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.211 -18.767 -3.626 20.097 hybrid contribution 0.618 3.247 0.184 3.311 sum -5.593 -15.519 -3.443 16.852 Atomic orbital electron populations 1.70090 1.07494 1.29227 1.46866 1.26002 0.96010 1.02973 0.92932 0.85102 0.78109 0.76041 0.79528 1.19044 1.19888 1.18643 1.23574 0.96331 0.91535 1.59633 0.88601 1.82835 1.08197 0.98330 1.86947 1.22403 1.00133 0.95737 1.06378 1.21379 0.91647 1.00720 1.03088 1.21274 0.98986 0.93307 1.00246 1.21233 0.96395 0.95687 1.01857 1.21301 0.91756 0.99826 1.01616 1.17397 0.85100 0.90363 1.04387 1.43521 1.08111 1.23716 1.55133 1.21229 0.91886 0.79576 0.77427 1.90622 1.49426 1.60221 1.41030 1.22230 0.91693 0.92713 1.02897 1.64936 1.34669 1.18958 1.06007 1.22178 1.00054 0.96428 0.87366 1.22353 0.96258 0.99867 0.96192 0.90147 1.21776 0.91197 0.97699 0.95771 1.63291 1.04190 1.49003 1.15431 1.22158 0.99858 0.97448 0.86382 1.23078 0.96832 1.00974 0.96599 0.91170 1.22109 0.87641 1.00585 0.96038 0.91478 0.85715 0.83771 0.83340 0.84222 0.74807 0.84781 0.90098 0.93842 0.91229 0.92606 0.90155 0.83737 0.89977 0.89273 0.88990 0.89754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.32 13.22 21.63 0.29 -50.03 16 2 C 0.03 1.44 5.49 84.83 0.47 1.90 16 3 Si 0.99 41.40 29.55 68.60 2.03 43.43 16 4 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 6 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 7 C -0.56 -30.39 9.08 67.93 0.62 -29.77 16 8 H 0.10 4.97 4.81 -2.91 -0.01 4.95 16 9 S -0.01 -0.69 20.37 -56.49 -1.15 -1.84 16 10 C -0.13 -5.75 6.12 22.81 0.14 -5.61 16 11 C -0.14 -5.97 9.26 22.42 0.21 -5.76 16 12 C -0.12 -4.01 10.03 22.27 0.22 -3.78 16 13 C -0.13 -4.18 10.04 22.30 0.22 -3.95 16 14 C -0.12 -4.48 8.71 22.37 0.19 -4.29 16 15 C 0.13 5.11 6.44 38.31 0.25 5.36 16 16 N -0.66 -22.22 5.16 -303.00 -1.56 -23.79 16 17 C 0.51 15.63 7.44 87.66 0.65 16.28 16 18 O -0.54 -19.53 12.35 -3.09 -0.04 -19.57 16 19 C 0.04 0.77 5.17 85.55 0.44 1.21 16 20 N -0.52 -11.27 4.97 -893.69 -4.44 -15.71 16 21 C 0.07 1.54 5.61 84.92 0.48 2.02 16 22 C -0.13 -2.29 2.91 -10.60 -0.03 -2.32 16 23 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 24 C 0.06 1.04 7.44 84.83 0.63 1.67 16 25 N -0.69 -9.84 7.57 -507.61 -3.84 -13.68 16 26 C 0.07 0.85 7.44 84.93 0.63 1.49 16 27 C -0.15 -2.18 2.91 -10.59 -0.03 -2.21 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 C 0.06 0.94 6.70 84.83 0.57 1.51 16 30 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 31 H 0.13 5.47 4.93 -2.91 -0.01 5.45 16 32 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 33 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 34 H 0.14 5.06 5.79 -2.91 -0.02 5.04 16 35 H 0.41 13.09 7.66 -92.71 -0.71 12.38 16 36 H 0.13 2.17 7.98 -2.39 -0.02 2.15 16 37 H 0.08 1.55 7.86 -2.39 -0.02 1.53 16 38 H 0.04 1.02 7.70 -2.39 -0.02 1.00 16 39 H 0.07 1.97 7.50 -2.38 -0.02 1.95 16 40 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.35 3.94 8.94 -89.69 -0.80 3.14 16 43 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 46 H 0.08 0.97 7.57 -2.39 -0.02 0.96 16 Total: -1.00 -66.58 377.47 -3.55 -70.13 By element: Atomic # 1 Polarization: 37.82 SS G_CDS: -0.48 Total: 37.34 kcal Atomic # 6 Polarization: -31.92 SS G_CDS: 5.66 Total: -26.26 kcal Atomic # 7 Polarization: -93.65 SS G_CDS: -9.56 Total: -103.22 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.04 Total: -19.57 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Atomic # 16 Polarization: -0.69 SS G_CDS: -1.15 Total: -1.84 kcal Total: -66.58 -3.55 -70.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609144400.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.222 kcal (2) G-P(sol) polarization free energy of solvation -66.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds