Wall clock time and date at job start Wed Apr 1 2020 04:23:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31625 * 1
3 3 Si 1.86792 * 120.00043 * 2 1
4 4 H 1.48508 * 109.46826 * 180.02562 * 3 2 1
5 5 H 1.48500 * 109.47285 * 299.99723 * 3 2 1
6 6 H 1.48499 * 109.47365 * 60.00507 * 3 2 1
7 7 C 1.38813 * 119.99547 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00032 * 197.37785 * 7 2 1
9 9 N 1.36935 * 120.00232 * 17.37412 * 7 2 1
10 10 C 1.46933 * 120.63058 * 207.68268 * 9 7 2
11 11 C 1.53188 * 108.77374 * 233.58481 * 10 9 7
12 12 C 1.53033 * 109.31551 * 305.36329 * 11 10 9
13 13 N 1.46498 * 109.46011 * 181.38249 * 12 11 10
14 14 C 1.34784 * 119.99834 * 155.00274 * 13 12 11
15 15 O 1.21586 * 119.99977 * 359.97438 * 14 13 12
16 16 N 1.34775 * 120.00020 * 180.02562 * 14 13 12
17 17 C 1.46495 * 120.00156 * 179.97438 * 16 14 13
18 18 H 1.09004 * 109.27164 * 35.46671 * 17 16 14
19 19 C 1.54141 * 109.27988 * 276.01870 * 17 16 14
20 20 S 1.83301 * 101.07458 * 211.37612 * 19 17 16
21 21 C 1.77431 * 96.61554 * 24.83634 * 20 19 17
22 22 C 1.38822 * 130.57766 * 164.53878 * 21 20 19
23 23 C 1.38028 * 120.16160 * 180.62574 * 22 21 20
24 24 C 1.38317 * 119.29446 * 0.27667 * 23 22 21
25 25 C 1.37701 * 120.54161 * 359.30342 * 24 23 22
26 26 C 1.38892 * 108.27983 * 344.85174 * 21 20 19
27 27 C 1.53047 * 109.53647 * 61.37010 * 12 11 10
28 28 C 1.46921 * 120.63037 * 27.65887 * 9 7 2
29 29 H 0.97000 * 119.99589 * 359.97438 * 1 2 3
30 30 H 1.09003 * 109.58403 * 113.79713 * 10 9 7
31 31 H 1.08994 * 109.58535 * 353.37669 * 10 9 7
32 32 H 1.08998 * 109.49560 * 185.41178 * 11 10 9
33 33 H 1.09000 * 109.49567 * 65.31936 * 11 10 9
34 34 H 1.08996 * 109.46279 * 301.35830 * 12 11 10
35 35 H 0.97000 * 120.00140 * 335.00605 * 13 12 11
36 36 H 0.97003 * 119.99699 * 359.97438 * 16 14 13
37 37 H 1.09001 * 111.09992 * 329.32308 * 19 17 16
38 38 H 1.08997 * 111.10699 * 93.38461 * 19 17 16
39 39 H 1.08004 * 119.91721 * 0.65171 * 22 21 20
40 40 H 1.08002 * 120.35156 * 180.02562 * 23 22 21
41 41 H 1.08005 * 119.72448 * 179.58483 * 24 23 22
42 42 H 1.07999 * 119.47544 * 180.28425 * 25 24 23
43 43 H 1.08987 * 109.50216 * 58.58134 * 27 12 11
44 44 H 1.09004 * 109.49898 * 178.68520 * 27 12 11
45 45 H 1.08998 * 109.58928 * 246.19806 * 28 9 7
46 46 H 1.09001 * 109.59109 * 6.62637 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 3.7103 1.3462 -0.0006
5 1 1.8916 2.3964 -1.2125
6 1 1.8916 2.3964 1.2125
7 6 2.0102 -1.2022 -0.0005
8 1 3.0533 -1.2238 0.2788
9 7 1.3724 -2.3609 -0.3552
10 6 1.8192 -3.6549 0.1784
11 6 2.0741 -4.6094 -0.9923
12 6 0.8185 -4.6886 -1.8635
13 7 1.0476 -5.6260 -2.9658
14 6 0.0037 -6.2456 -3.5514
15 8 -1.1281 -6.0269 -3.1646
16 7 0.2144 -7.1084 -4.5651
17 6 -0.9201 -7.7823 -5.2013
18 1 -1.7717 -7.1025 -5.2312
19 6 -1.2965 -9.0309 -4.3795
20 16 -1.9190 -10.1443 -5.6959
21 6 -1.0137 -9.4073 -7.0321
22 6 -0.7467 -9.8786 -8.3102
23 6 0.0027 -9.1200 -9.1866
24 6 0.4872 -7.8916 -8.7749
25 6 0.2151 -7.4203 -7.5100
26 6 -0.5431 -8.1707 -6.6096
27 6 0.5007 -3.3030 -2.4305
28 6 0.2279 -2.3336 -1.2760
29 1 -0.4849 0.8401 0.0004
30 1 1.0467 -4.0694 0.8263
31 1 2.7398 -3.5180 0.7455
32 1 2.3133 -5.6009 -0.6079
33 1 2.9080 -4.2390 -1.5887
34 1 -0.0207 -5.0352 -1.2605
35 1 1.9505 -5.8008 -3.2741
36 1 1.1174 -7.2832 -4.8735
37 1 -0.4212 -9.4556 -3.8879
38 1 -2.0785 -8.8031 -3.6552
39 1 -1.1267 -10.8411 -8.6197
40 1 0.2119 -9.4835 -10.1819
41 1 1.0800 -7.2953 -9.4528
42 1 0.5983 -6.4568 -7.2081
43 1 1.3493 -2.9449 -3.0132
44 1 -0.3801 -3.3647 -3.0697
45 1 -0.6743 -2.6404 -0.7468
46 1 0.0985 -1.3250 -1.6686
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000609805428.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:23:11
Heat of formation + Delta-G solvation = 24.668796 kcal
Electronic energy + Delta-G solvation = -27627.311615 eV
Core-core repulsion = 23836.454331 eV
Total energy + Delta-G solvation = -3790.857284 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 347.141 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-40.49013 -39.47646 -37.60890 -35.88269 -34.38413 -32.71347 -31.77948 -31.18281
-30.03793 -29.68326 -29.05510 -25.22335 -24.28955 -23.20601 -22.29936 -22.16315
-21.28054 -20.66168 -19.50840 -18.59144 -17.92000 -16.89564 -16.52773 -15.89353
-15.76279 -15.51402 -15.13813 -14.76956 -14.68365 -14.27193 -13.97933 -13.87304
-13.66731 -13.50623 -13.38949 -13.01174 -12.92003 -12.61143 -12.42440 -12.36544
-11.96274 -11.56103 -11.48455 -11.13824 -10.95403 -10.74575 -10.70286 -10.40313
-10.24038 -10.20548 -10.11019 -10.02499 -9.76761 -9.57356 -9.50386 -9.17793
-8.67616 -8.41669 -7.80043 -6.69656 -5.78969 -3.21581 0.67129 0.86642
1.17950 1.83076 2.67717 3.20750 3.28474 3.36753 3.44516 3.46520
3.88182 4.23757 4.30431 4.48934 4.48963 4.63142 4.70404 4.89965
5.03477 5.19076 5.27231 5.32575 5.39003 5.41985 5.44992 5.53034
5.63499 5.77401 5.82052 5.89061 6.04168 6.07495 6.21894 6.22686
6.33377 6.41336 6.43071 6.56257 6.64743 6.73857 6.85504 6.93208
7.04020 7.38541 7.68468 7.79531 8.04000 8.44401 8.65431 9.20473
9.83913 10.40345 11.29544
Molecular weight = 347.14amu
Principal moments of inertia in cm(-1)
A = 0.021688 B = 0.002079 C = 0.001992
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1290.735373 B =13467.898151 C =14055.115364
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.900 5.900
2 C 0.002 3.998
3 Si 0.902 3.098
4 H -0.278 1.278
5 H -0.289 1.289
6 H -0.290 1.290
7 C -0.253 4.253
8 H 0.066 0.934
9 N -0.593 5.593
10 C 0.148 3.852
11 C -0.138 4.138
12 C 0.168 3.832
13 N -0.737 5.737
14 C 0.703 3.297
15 O -0.584 6.584
16 N -0.743 5.743
17 C 0.207 3.793
18 H 0.116 0.884
19 C -0.093 4.093
20 S -0.141 6.141
21 C -0.069 4.069
22 C -0.090 4.090
23 C -0.097 4.097
24 C -0.121 4.121
25 C -0.080 4.080
26 C -0.120 4.120
27 C -0.146 4.146
28 C 0.173 3.827
29 H 0.254 0.746
30 H 0.021 0.979
31 H 0.058 0.942
32 H 0.055 0.945
33 H 0.062 0.938
34 H 0.082 0.918
35 H 0.391 0.609
36 H 0.397 0.603
37 H 0.103 0.897
38 H 0.124 0.876
39 H 0.129 0.871
40 H 0.133 0.867
41 H 0.129 0.871
42 H 0.126 0.874
43 H 0.053 0.947
44 H 0.053 0.947
45 H 0.021 0.979
46 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.015 -21.129 -17.112 27.263
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.545 5.545
2 C -0.197 4.197
3 Si 0.731 3.269
4 H -0.203 1.203
5 H -0.216 1.216
6 H -0.217 1.217
7 C -0.383 4.383
8 H 0.084 0.916
9 N -0.316 5.316
10 C 0.021 3.979
11 C -0.178 4.178
12 C 0.065 3.935
13 N -0.390 5.390
14 C 0.402 3.598
15 O -0.461 6.461
16 N -0.400 5.400
17 C 0.100 3.900
18 H 0.134 0.866
19 C -0.242 4.242
20 S 0.101 5.899
21 C -0.182 4.182
22 C -0.114 4.114
23 C -0.117 4.117
24 C -0.141 4.141
25 C -0.100 4.100
26 C -0.126 4.126
27 C -0.187 4.187
28 C 0.047 3.953
29 H 0.064 0.936
30 H 0.038 0.962
31 H 0.077 0.923
32 H 0.073 0.927
33 H 0.081 0.919
34 H 0.100 0.900
35 H 0.223 0.777
36 H 0.231 0.769
37 H 0.121 0.879
38 H 0.142 0.858
39 H 0.147 0.853
40 H 0.150 0.850
41 H 0.147 0.853
42 H 0.144 0.856
43 H 0.072 0.928
44 H 0.072 0.928
45 H 0.039 0.961
46 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -0.027 -21.751 -16.496 27.299
hybrid contribution 2.073 1.689 -0.485 2.717
sum 2.046 -20.062 -16.980 26.363
Atomic orbital electron populations
1.70053 1.05262 1.25446 1.53717 1.25060 0.95282 0.98470 1.00908
0.86239 0.79322 0.84006 0.77285 1.20279 1.21576 1.21719 1.19209
0.92706 0.84841 1.41550 0.91594 1.44125 1.35875 1.01375 1.50187
1.20840 0.97999 0.86742 0.92301 1.22343 0.96727 0.99703 0.99065
1.20938 0.98602 0.88227 0.85751 1.45541 1.07702 1.47299 1.38443
1.16008 0.85450 0.78643 0.79663 1.90948 1.21363 1.67860 1.65937
1.45229 1.09297 1.47715 1.37752 1.20040 0.90804 0.93314 0.85864
0.86618 1.24934 1.05546 0.95118 0.98620 1.86236 1.56740 1.45837
1.01105 1.21985 1.01261 0.96732 0.98212 1.20444 0.99292 1.00299
0.91352 1.21167 0.96777 0.94415 0.99303 1.21027 1.00616 0.96561
0.95930 1.20860 0.96844 0.99391 0.92920 1.20786 1.01382 0.94680
0.95740 1.22579 1.00413 0.95197 1.00504 1.20768 0.88634 0.98231
0.87678 0.93622 0.96155 0.92322 0.92663 0.91905 0.90002 0.77659
0.76925 0.87852 0.85793 0.85328 0.84953 0.85296 0.85591 0.92811
0.92835 0.96114 0.89248
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.28 11.19 55.49 0.62 -25.66 16
2 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16
3 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16
4 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16
5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16
6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
7 C -0.25 -6.87 9.59 -15.06 -0.14 -7.02 16
8 H 0.07 1.75 7.89 -52.48 -0.41 1.33 16
9 N -0.59 -14.67 2.99 -172.32 -0.52 -15.19 16
10 C 0.15 3.01 6.52 -3.71 -0.02 2.98 16
11 C -0.14 -2.23 5.55 -26.62 -0.15 -2.38 16
12 C 0.17 2.86 2.42 -67.89 -0.16 2.69 16
13 N -0.74 -9.80 5.08 -58.64 -0.30 -10.10 16
14 C 0.70 9.91 8.48 -86.91 -0.74 9.18 16
15 O -0.58 -10.80 15.67 5.29 0.08 -10.72 16
16 N -0.74 -7.53 4.86 -59.14 -0.29 -7.82 16
17 C 0.21 2.14 2.86 -68.40 -0.20 1.95 16
18 H 0.12 1.44 7.58 -51.93 -0.39 1.05 16
19 C -0.09 -0.90 7.19 37.75 0.27 -0.63 16
20 S -0.14 -1.39 23.08 -107.50 -2.48 -3.87 16
21 C -0.07 -0.66 6.48 -39.12 -0.25 -0.91 16
22 C -0.09 -0.71 10.05 -39.44 -0.40 -1.11 16
23 C -0.10 -0.63 10.08 -39.63 -0.40 -1.03 16
24 C -0.12 -0.83 10.00 -39.75 -0.40 -1.23 16
25 C -0.08 -0.66 9.54 -39.27 -0.37 -1.03 16
26 C -0.12 -1.13 5.59 -103.79 -0.58 -1.71 16
27 C -0.15 -2.89 5.65 -26.60 -0.15 -3.04 16
28 C 0.17 4.20 5.31 -3.71 -0.02 4.18 16
29 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16
30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16
31 H 0.06 1.15 7.93 -51.93 -0.41 0.73 16
32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16
33 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16
34 H 0.08 1.58 7.58 -51.93 -0.39 1.19 16
35 H 0.39 3.99 8.62 -40.82 -0.35 3.64 16
36 H 0.40 3.03 8.44 -40.82 -0.34 2.69 16
37 H 0.10 0.93 8.10 -51.93 -0.42 0.51 16
38 H 0.12 1.27 8.14 -51.93 -0.42 0.84 16
39 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16
40 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16
41 H 0.13 0.62 8.06 -52.48 -0.42 0.19 16
42 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16
43 H 0.05 1.05 8.14 -51.94 -0.42 0.63 16
44 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16
45 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16
46 H 0.09 2.43 6.04 -51.93 -0.31 2.11 16
LS Contribution 383.70 15.07 5.78 5.78
Total: -1.00 -32.22 383.70 -12.75 -44.97
By element:
Atomic # 1 Polarization: 12.04 SS G_CDS: -6.83 Total: 5.21 kcal
Atomic # 6 Polarization: 4.65 SS G_CDS: -3.80 Total: 0.85 kcal
Atomic # 7 Polarization: -58.28 SS G_CDS: -0.48 Total: -58.76 kcal
Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.72 kcal
Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal
Atomic # 16 Polarization: -1.39 SS G_CDS: -2.48 Total: -3.87 kcal
Total LS contribution 5.78 Total: 5.78 kcal
Total: -32.22 -12.75 -44.97 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000609805428.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.639 kcal
(2) G-P(sol) polarization free energy of solvation -32.216 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.423 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.754 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.971 kcal
(6) G-S(sol) free energy of system = (1) + (5) 24.669 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds