Wall clock time and date at job start Wed Apr 1 2020 04:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86792 * 120.00043 * 2 1 4 4 H 1.48508 * 109.46826 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47285 * 299.99723 * 3 2 1 6 6 H 1.48499 * 109.47365 * 60.00507 * 3 2 1 7 7 C 1.38813 * 119.99547 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00032 * 197.37785 * 7 2 1 9 9 N 1.36935 * 120.00232 * 17.37412 * 7 2 1 10 10 C 1.46933 * 120.63058 * 207.68268 * 9 7 2 11 11 C 1.53188 * 108.77374 * 233.58481 * 10 9 7 12 12 C 1.53033 * 109.31551 * 305.36329 * 11 10 9 13 13 N 1.46498 * 109.46011 * 181.38249 * 12 11 10 14 14 C 1.34784 * 119.99834 * 155.00274 * 13 12 11 15 15 O 1.21586 * 119.99977 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00020 * 180.02562 * 14 13 12 17 17 C 1.46495 * 120.00156 * 179.97438 * 16 14 13 18 18 H 1.09004 * 109.27164 * 35.46671 * 17 16 14 19 19 C 1.54141 * 109.27988 * 276.01870 * 17 16 14 20 20 S 1.83301 * 101.07458 * 211.37612 * 19 17 16 21 21 C 1.77431 * 96.61554 * 24.83634 * 20 19 17 22 22 C 1.38822 * 130.57766 * 164.53878 * 21 20 19 23 23 C 1.38028 * 120.16160 * 180.62574 * 22 21 20 24 24 C 1.38317 * 119.29446 * 0.27667 * 23 22 21 25 25 C 1.37701 * 120.54161 * 359.30342 * 24 23 22 26 26 C 1.38892 * 108.27983 * 344.85174 * 21 20 19 27 27 C 1.53047 * 109.53647 * 61.37010 * 12 11 10 28 28 C 1.46921 * 120.63037 * 27.65887 * 9 7 2 29 29 H 0.97000 * 119.99589 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.58403 * 113.79713 * 10 9 7 31 31 H 1.08994 * 109.58535 * 353.37669 * 10 9 7 32 32 H 1.08998 * 109.49560 * 185.41178 * 11 10 9 33 33 H 1.09000 * 109.49567 * 65.31936 * 11 10 9 34 34 H 1.08996 * 109.46279 * 301.35830 * 12 11 10 35 35 H 0.97000 * 120.00140 * 335.00605 * 13 12 11 36 36 H 0.97003 * 119.99699 * 359.97438 * 16 14 13 37 37 H 1.09001 * 111.09992 * 329.32308 * 19 17 16 38 38 H 1.08997 * 111.10699 * 93.38461 * 19 17 16 39 39 H 1.08004 * 119.91721 * 0.65171 * 22 21 20 40 40 H 1.08002 * 120.35156 * 180.02562 * 23 22 21 41 41 H 1.08005 * 119.72448 * 179.58483 * 24 23 22 42 42 H 1.07999 * 119.47544 * 180.28425 * 25 24 23 43 43 H 1.08987 * 109.50216 * 58.58134 * 27 12 11 44 44 H 1.09004 * 109.49898 * 178.68520 * 27 12 11 45 45 H 1.08998 * 109.58928 * 246.19806 * 28 9 7 46 46 H 1.09001 * 109.59109 * 6.62637 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0533 -1.2238 0.2788 9 7 1.3724 -2.3609 -0.3552 10 6 1.8192 -3.6549 0.1784 11 6 2.0741 -4.6094 -0.9923 12 6 0.8185 -4.6886 -1.8635 13 7 1.0476 -5.6260 -2.9658 14 6 0.0037 -6.2456 -3.5514 15 8 -1.1281 -6.0269 -3.1646 16 7 0.2144 -7.1084 -4.5651 17 6 -0.9201 -7.7823 -5.2013 18 1 -1.7717 -7.1025 -5.2312 19 6 -1.2965 -9.0309 -4.3795 20 16 -1.9190 -10.1443 -5.6959 21 6 -1.0137 -9.4073 -7.0321 22 6 -0.7467 -9.8786 -8.3102 23 6 0.0027 -9.1200 -9.1866 24 6 0.4872 -7.8916 -8.7749 25 6 0.2151 -7.4203 -7.5100 26 6 -0.5431 -8.1707 -6.6096 27 6 0.5007 -3.3030 -2.4305 28 6 0.2279 -2.3336 -1.2760 29 1 -0.4849 0.8401 0.0004 30 1 1.0467 -4.0694 0.8263 31 1 2.7398 -3.5180 0.7455 32 1 2.3133 -5.6009 -0.6079 33 1 2.9080 -4.2390 -1.5887 34 1 -0.0207 -5.0352 -1.2605 35 1 1.9505 -5.8008 -3.2741 36 1 1.1174 -7.2832 -4.8735 37 1 -0.4212 -9.4556 -3.8879 38 1 -2.0785 -8.8031 -3.6552 39 1 -1.1267 -10.8411 -8.6197 40 1 0.2119 -9.4835 -10.1819 41 1 1.0800 -7.2953 -9.4528 42 1 0.5983 -6.4568 -7.2081 43 1 1.3493 -2.9449 -3.0132 44 1 -0.3801 -3.3647 -3.0697 45 1 -0.6743 -2.6404 -0.7468 46 1 0.0985 -1.3250 -1.6686 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609805428.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:11 Heat of formation + Delta-G solvation = 24.668796 kcal Electronic energy + Delta-G solvation = -27627.311615 eV Core-core repulsion = 23836.454331 eV Total energy + Delta-G solvation = -3790.857284 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.49013 -39.47646 -37.60890 -35.88269 -34.38413 -32.71347 -31.77948 -31.18281 -30.03793 -29.68326 -29.05510 -25.22335 -24.28955 -23.20601 -22.29936 -22.16315 -21.28054 -20.66168 -19.50840 -18.59144 -17.92000 -16.89564 -16.52773 -15.89353 -15.76279 -15.51402 -15.13813 -14.76956 -14.68365 -14.27193 -13.97933 -13.87304 -13.66731 -13.50623 -13.38949 -13.01174 -12.92003 -12.61143 -12.42440 -12.36544 -11.96274 -11.56103 -11.48455 -11.13824 -10.95403 -10.74575 -10.70286 -10.40313 -10.24038 -10.20548 -10.11019 -10.02499 -9.76761 -9.57356 -9.50386 -9.17793 -8.67616 -8.41669 -7.80043 -6.69656 -5.78969 -3.21581 0.67129 0.86642 1.17950 1.83076 2.67717 3.20750 3.28474 3.36753 3.44516 3.46520 3.88182 4.23757 4.30431 4.48934 4.48963 4.63142 4.70404 4.89965 5.03477 5.19076 5.27231 5.32575 5.39003 5.41985 5.44992 5.53034 5.63499 5.77401 5.82052 5.89061 6.04168 6.07495 6.21894 6.22686 6.33377 6.41336 6.43071 6.56257 6.64743 6.73857 6.85504 6.93208 7.04020 7.38541 7.68468 7.79531 8.04000 8.44401 8.65431 9.20473 9.83913 10.40345 11.29544 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.021688 B = 0.002079 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.735373 B =13467.898151 C =14055.115364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.148 3.852 11 C -0.138 4.138 12 C 0.168 3.832 13 N -0.737 5.737 14 C 0.703 3.297 15 O -0.584 6.584 16 N -0.743 5.743 17 C 0.207 3.793 18 H 0.116 0.884 19 C -0.093 4.093 20 S -0.141 6.141 21 C -0.069 4.069 22 C -0.090 4.090 23 C -0.097 4.097 24 C -0.121 4.121 25 C -0.080 4.080 26 C -0.120 4.120 27 C -0.146 4.146 28 C 0.173 3.827 29 H 0.254 0.746 30 H 0.021 0.979 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.391 0.609 36 H 0.397 0.603 37 H 0.103 0.897 38 H 0.124 0.876 39 H 0.129 0.871 40 H 0.133 0.867 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.021 0.979 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.015 -21.129 -17.112 27.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.021 3.979 11 C -0.178 4.178 12 C 0.065 3.935 13 N -0.390 5.390 14 C 0.402 3.598 15 O -0.461 6.461 16 N -0.400 5.400 17 C 0.100 3.900 18 H 0.134 0.866 19 C -0.242 4.242 20 S 0.101 5.899 21 C -0.182 4.182 22 C -0.114 4.114 23 C -0.117 4.117 24 C -0.141 4.141 25 C -0.100 4.100 26 C -0.126 4.126 27 C -0.187 4.187 28 C 0.047 3.953 29 H 0.064 0.936 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.223 0.777 36 H 0.231 0.769 37 H 0.121 0.879 38 H 0.142 0.858 39 H 0.147 0.853 40 H 0.150 0.850 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.039 0.961 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.027 -21.751 -16.496 27.299 hybrid contribution 2.073 1.689 -0.485 2.717 sum 2.046 -20.062 -16.980 26.363 Atomic orbital electron populations 1.70053 1.05262 1.25446 1.53717 1.25060 0.95282 0.98470 1.00908 0.86239 0.79322 0.84006 0.77285 1.20279 1.21576 1.21719 1.19209 0.92706 0.84841 1.41550 0.91594 1.44125 1.35875 1.01375 1.50187 1.20840 0.97999 0.86742 0.92301 1.22343 0.96727 0.99703 0.99065 1.20938 0.98602 0.88227 0.85751 1.45541 1.07702 1.47299 1.38443 1.16008 0.85450 0.78643 0.79663 1.90948 1.21363 1.67860 1.65937 1.45229 1.09297 1.47715 1.37752 1.20040 0.90804 0.93314 0.85864 0.86618 1.24934 1.05546 0.95118 0.98620 1.86236 1.56740 1.45837 1.01105 1.21985 1.01261 0.96732 0.98212 1.20444 0.99292 1.00299 0.91352 1.21167 0.96777 0.94415 0.99303 1.21027 1.00616 0.96561 0.95930 1.20860 0.96844 0.99391 0.92920 1.20786 1.01382 0.94680 0.95740 1.22579 1.00413 0.95197 1.00504 1.20768 0.88634 0.98231 0.87678 0.93622 0.96155 0.92322 0.92663 0.91905 0.90002 0.77659 0.76925 0.87852 0.85793 0.85328 0.84953 0.85296 0.85591 0.92811 0.92835 0.96114 0.89248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.28 11.19 55.49 0.62 -25.66 16 2 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 3 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.25 -6.87 9.59 -15.06 -0.14 -7.02 16 8 H 0.07 1.75 7.89 -52.48 -0.41 1.33 16 9 N -0.59 -14.67 2.99 -172.32 -0.52 -15.19 16 10 C 0.15 3.01 6.52 -3.71 -0.02 2.98 16 11 C -0.14 -2.23 5.55 -26.62 -0.15 -2.38 16 12 C 0.17 2.86 2.42 -67.89 -0.16 2.69 16 13 N -0.74 -9.80 5.08 -58.64 -0.30 -10.10 16 14 C 0.70 9.91 8.48 -86.91 -0.74 9.18 16 15 O -0.58 -10.80 15.67 5.29 0.08 -10.72 16 16 N -0.74 -7.53 4.86 -59.14 -0.29 -7.82 16 17 C 0.21 2.14 2.86 -68.40 -0.20 1.95 16 18 H 0.12 1.44 7.58 -51.93 -0.39 1.05 16 19 C -0.09 -0.90 7.19 37.75 0.27 -0.63 16 20 S -0.14 -1.39 23.08 -107.50 -2.48 -3.87 16 21 C -0.07 -0.66 6.48 -39.12 -0.25 -0.91 16 22 C -0.09 -0.71 10.05 -39.44 -0.40 -1.11 16 23 C -0.10 -0.63 10.08 -39.63 -0.40 -1.03 16 24 C -0.12 -0.83 10.00 -39.75 -0.40 -1.23 16 25 C -0.08 -0.66 9.54 -39.27 -0.37 -1.03 16 26 C -0.12 -1.13 5.59 -103.79 -0.58 -1.71 16 27 C -0.15 -2.89 5.65 -26.60 -0.15 -3.04 16 28 C 0.17 4.20 5.31 -3.71 -0.02 4.18 16 29 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 1.15 7.93 -51.93 -0.41 0.73 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.08 1.58 7.58 -51.93 -0.39 1.19 16 35 H 0.39 3.99 8.62 -40.82 -0.35 3.64 16 36 H 0.40 3.03 8.44 -40.82 -0.34 2.69 16 37 H 0.10 0.93 8.10 -51.93 -0.42 0.51 16 38 H 0.12 1.27 8.14 -51.93 -0.42 0.84 16 39 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 40 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 41 H 0.13 0.62 8.06 -52.48 -0.42 0.19 16 42 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.05 1.05 8.14 -51.94 -0.42 0.63 16 44 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.09 2.43 6.04 -51.93 -0.31 2.11 16 LS Contribution 383.70 15.07 5.78 5.78 Total: -1.00 -32.22 383.70 -12.75 -44.97 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -6.83 Total: 5.21 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -3.80 Total: 0.85 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: -0.48 Total: -58.76 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.72 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Atomic # 16 Polarization: -1.39 SS G_CDS: -2.48 Total: -3.87 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.22 -12.75 -44.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609805428.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.639 kcal (2) G-P(sol) polarization free energy of solvation -32.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds