Wall clock time and date at job start Wed Apr 1 2020 04:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86792 * 120.00043 * 2 1 4 4 H 1.48508 * 109.46826 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47285 * 299.99723 * 3 2 1 6 6 H 1.48499 * 109.47365 * 60.00507 * 3 2 1 7 7 C 1.38813 * 119.99547 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00032 * 197.37785 * 7 2 1 9 9 N 1.36935 * 120.00232 * 17.37412 * 7 2 1 10 10 C 1.46933 * 120.63058 * 207.68268 * 9 7 2 11 11 C 1.53188 * 108.77374 * 233.58481 * 10 9 7 12 12 C 1.53033 * 109.31551 * 305.36329 * 11 10 9 13 13 N 1.46498 * 109.46011 * 181.38249 * 12 11 10 14 14 C 1.34784 * 119.99834 * 155.00274 * 13 12 11 15 15 O 1.21586 * 119.99977 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00020 * 180.02562 * 14 13 12 17 17 C 1.46495 * 120.00156 * 179.97438 * 16 14 13 18 18 H 1.09004 * 109.27164 * 35.46671 * 17 16 14 19 19 C 1.54141 * 109.27988 * 276.01870 * 17 16 14 20 20 S 1.83301 * 101.07458 * 211.37612 * 19 17 16 21 21 C 1.77431 * 96.61554 * 24.83634 * 20 19 17 22 22 C 1.38822 * 130.57766 * 164.53878 * 21 20 19 23 23 C 1.38028 * 120.16160 * 180.62574 * 22 21 20 24 24 C 1.38317 * 119.29446 * 0.27667 * 23 22 21 25 25 C 1.37701 * 120.54161 * 359.30342 * 24 23 22 26 26 C 1.38892 * 108.27983 * 344.85174 * 21 20 19 27 27 C 1.53047 * 109.53647 * 61.37010 * 12 11 10 28 28 C 1.46921 * 120.63037 * 27.65887 * 9 7 2 29 29 H 0.97000 * 119.99589 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.58403 * 113.79713 * 10 9 7 31 31 H 1.08994 * 109.58535 * 353.37669 * 10 9 7 32 32 H 1.08998 * 109.49560 * 185.41178 * 11 10 9 33 33 H 1.09000 * 109.49567 * 65.31936 * 11 10 9 34 34 H 1.08996 * 109.46279 * 301.35830 * 12 11 10 35 35 H 0.97000 * 120.00140 * 335.00605 * 13 12 11 36 36 H 0.97003 * 119.99699 * 359.97438 * 16 14 13 37 37 H 1.09001 * 111.09992 * 329.32308 * 19 17 16 38 38 H 1.08997 * 111.10699 * 93.38461 * 19 17 16 39 39 H 1.08004 * 119.91721 * 0.65171 * 22 21 20 40 40 H 1.08002 * 120.35156 * 180.02562 * 23 22 21 41 41 H 1.08005 * 119.72448 * 179.58483 * 24 23 22 42 42 H 1.07999 * 119.47544 * 180.28425 * 25 24 23 43 43 H 1.08987 * 109.50216 * 58.58134 * 27 12 11 44 44 H 1.09004 * 109.49898 * 178.68520 * 27 12 11 45 45 H 1.08998 * 109.58928 * 246.19806 * 28 9 7 46 46 H 1.09001 * 109.59109 * 6.62637 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0533 -1.2238 0.2788 9 7 1.3724 -2.3609 -0.3552 10 6 1.8192 -3.6549 0.1784 11 6 2.0741 -4.6094 -0.9923 12 6 0.8185 -4.6886 -1.8635 13 7 1.0476 -5.6260 -2.9658 14 6 0.0037 -6.2456 -3.5514 15 8 -1.1281 -6.0269 -3.1646 16 7 0.2144 -7.1084 -4.5651 17 6 -0.9201 -7.7823 -5.2013 18 1 -1.7717 -7.1025 -5.2312 19 6 -1.2965 -9.0309 -4.3795 20 16 -1.9190 -10.1443 -5.6959 21 6 -1.0137 -9.4073 -7.0321 22 6 -0.7467 -9.8786 -8.3102 23 6 0.0027 -9.1200 -9.1866 24 6 0.4872 -7.8916 -8.7749 25 6 0.2151 -7.4203 -7.5100 26 6 -0.5431 -8.1707 -6.6096 27 6 0.5007 -3.3030 -2.4305 28 6 0.2279 -2.3336 -1.2760 29 1 -0.4849 0.8401 0.0004 30 1 1.0467 -4.0694 0.8263 31 1 2.7398 -3.5180 0.7455 32 1 2.3133 -5.6009 -0.6079 33 1 2.9080 -4.2390 -1.5887 34 1 -0.0207 -5.0352 -1.2605 35 1 1.9505 -5.8008 -3.2741 36 1 1.1174 -7.2832 -4.8735 37 1 -0.4212 -9.4556 -3.8879 38 1 -2.0785 -8.8031 -3.6552 39 1 -1.1267 -10.8411 -8.6197 40 1 0.2119 -9.4835 -10.1819 41 1 1.0800 -7.2953 -9.4528 42 1 0.5983 -6.4568 -7.2081 43 1 1.3493 -2.9449 -3.0132 44 1 -0.3801 -3.3647 -3.0697 45 1 -0.6743 -2.6404 -0.7468 46 1 0.0985 -1.3250 -1.6686 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609805428.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:10 Heat of formation + Delta-G solvation = 4.920594 kcal Electronic energy + Delta-G solvation = -27628.167961 eV Core-core repulsion = 23836.454331 eV Total energy + Delta-G solvation = -3791.713631 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.50478 -40.32307 -39.10321 -36.88531 -35.91167 -34.12448 -33.05981 -31.86137 -31.64482 -31.03361 -30.09125 -26.95949 -25.27981 -23.92908 -23.85597 -23.60590 -22.18354 -21.77952 -21.07731 -19.65549 -18.89345 -18.53683 -17.65544 -16.92887 -16.63238 -16.47419 -16.36802 -16.05355 -15.68574 -15.57540 -15.34578 -15.16980 -14.89235 -14.71433 -14.50783 -14.25012 -14.05031 -14.01210 -13.57596 -13.18012 -13.16973 -13.02862 -12.66339 -12.60970 -12.56271 -12.20643 -12.10780 -12.01674 -11.85561 -11.54138 -11.48975 -11.41625 -11.21479 -10.76167 -10.59503 -10.46959 -9.94586 -9.77249 -8.71728 -8.53376 -7.87163 -5.32932 0.05113 0.26857 0.45513 1.08761 1.46977 1.48794 1.59521 1.65252 2.10408 2.51861 2.64148 3.15164 3.21442 3.30687 3.54217 3.67576 3.85600 3.89215 3.92522 4.10658 4.15025 4.35385 4.39510 4.43423 4.46145 4.49013 4.55167 4.68131 4.70933 4.80978 4.87635 4.94842 5.05443 5.09519 5.13670 5.15717 5.28659 5.33209 5.39201 5.46885 5.49365 5.58785 5.64689 5.70528 5.87825 5.96144 6.38888 7.06204 7.13688 7.55147 7.84904 8.37285 9.20013 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.021688 B = 0.002079 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.735373 B =13467.898151 C =14055.115364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.057 4.057 3 Si 0.968 3.032 4 H -0.261 1.261 5 H -0.292 1.292 6 H -0.294 1.294 7 C -0.258 4.258 8 H 0.075 0.925 9 N -0.610 5.610 10 C 0.140 3.860 11 C -0.120 4.120 12 C 0.182 3.818 13 N -0.722 5.722 14 C 0.703 3.297 15 O -0.630 6.630 16 N -0.721 5.721 17 C 0.211 3.789 18 H 0.089 0.911 19 C -0.087 4.087 20 S -0.158 6.158 21 C -0.084 4.084 22 C -0.097 4.097 23 C -0.089 4.089 24 C -0.119 4.119 25 C -0.088 4.088 26 C -0.133 4.133 27 C -0.129 4.129 28 C 0.182 3.818 29 H 0.249 0.751 30 H 0.011 0.989 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.412 0.588 36 H 0.413 0.587 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.142 0.858 40 H 0.163 0.837 41 H 0.154 0.846 42 H 0.131 0.869 43 H 0.061 0.939 44 H 0.043 0.957 45 H -0.012 1.012 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.924 -22.671 -19.259 30.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.252 4.252 3 Si 0.797 3.203 4 H -0.185 1.185 5 H -0.219 1.219 6 H -0.222 1.222 7 C -0.388 4.388 8 H 0.092 0.908 9 N -0.333 5.333 10 C 0.015 3.985 11 C -0.160 4.160 12 C 0.076 3.924 13 N -0.376 5.376 14 C 0.403 3.597 15 O -0.511 6.511 16 N -0.378 5.378 17 C 0.104 3.896 18 H 0.107 0.893 19 C -0.237 4.237 20 S 0.083 5.917 21 C -0.197 4.197 22 C -0.121 4.121 23 C -0.109 4.109 24 C -0.139 4.139 25 C -0.108 4.108 26 C -0.139 4.139 27 C -0.170 4.170 28 C 0.055 3.945 29 H 0.058 0.942 30 H 0.029 0.971 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.248 0.752 36 H 0.250 0.750 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.160 0.840 40 H 0.181 0.819 41 H 0.172 0.828 42 H 0.149 0.851 43 H 0.080 0.920 44 H 0.062 0.938 45 H 0.006 0.994 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.960 -23.357 -18.684 30.057 hybrid contribution 1.147 2.096 0.122 2.392 sum 4.107 -21.261 -18.563 28.521 Atomic orbital electron populations 1.70224 1.06913 1.25754 1.55646 1.25875 0.96000 1.01820 1.01471 0.85188 0.78831 0.79736 0.76580 1.18536 1.21942 1.22168 1.19604 0.93167 0.85824 1.40229 0.90769 1.44378 1.35633 1.02571 1.50746 1.21057 0.97879 0.85554 0.94053 1.22129 0.96194 1.00416 0.97228 1.20513 0.98436 0.87020 0.86419 1.45086 1.08689 1.46324 1.37513 1.16110 0.84697 0.78879 0.80043 1.90934 1.23365 1.69362 1.67418 1.44947 1.10288 1.46307 1.36242 1.19957 0.89866 0.92874 0.86941 0.89284 1.24831 1.05553 0.94911 0.98385 1.86225 1.57591 1.46001 1.01872 1.22109 1.01939 0.96895 0.98730 1.20752 0.99367 1.01140 0.90835 1.21559 0.95261 0.93857 1.00226 1.21379 1.00096 0.96837 0.95555 1.21032 0.96787 0.99516 0.93429 1.20672 1.02703 0.95229 0.95248 1.22313 1.00218 0.96020 0.98437 1.20474 0.87781 0.97426 0.88781 0.94227 0.97059 0.91336 0.89011 0.90544 0.92538 0.75190 0.74965 0.86890 0.86852 0.84034 0.81911 0.82801 0.85095 0.92022 0.93819 0.99390 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.89 11.19 21.65 0.24 -56.65 16 2 C -0.06 -3.19 4.91 84.86 0.42 -2.77 16 3 Si 0.97 44.83 29.59 68.60 2.03 46.86 16 4 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 7 C -0.26 -14.01 9.59 84.03 0.81 -13.21 16 8 H 0.07 3.84 7.89 -2.91 -0.02 3.82 16 9 N -0.61 -30.46 2.99 -699.09 -2.09 -32.55 16 10 C 0.14 5.55 6.52 86.36 0.56 6.11 16 11 C -0.12 -3.54 5.55 30.67 0.17 -3.37 16 12 C 0.18 5.97 2.42 45.02 0.11 6.08 16 13 N -0.72 -17.71 5.08 -457.68 -2.33 -20.03 16 14 C 0.70 19.27 8.48 179.05 1.52 20.78 16 15 O -0.63 -23.81 15.67 -3.99 -0.06 -23.87 16 16 N -0.72 -13.71 4.86 -459.28 -2.23 -15.94 16 17 C 0.21 4.33 2.86 44.69 0.13 4.46 16 18 H 0.09 2.33 7.58 -2.39 -0.02 2.31 16 19 C -0.09 -1.71 7.19 72.37 0.52 -1.19 16 20 S -0.16 -3.11 23.08 -56.49 -1.30 -4.41 16 21 C -0.08 -1.50 6.48 22.57 0.15 -1.36 16 22 C -0.10 -1.32 10.05 22.36 0.22 -1.09 16 23 C -0.09 -0.86 10.08 22.24 0.22 -0.64 16 24 C -0.12 -1.24 10.00 22.16 0.22 -1.02 16 25 C -0.09 -1.25 9.54 22.47 0.21 -1.04 16 26 C -0.13 -2.36 5.59 -19.32 -0.11 -2.47 16 27 C -0.13 -5.14 5.65 30.68 0.17 -4.97 16 28 C 0.18 9.18 5.31 86.37 0.46 9.64 16 29 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 30 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 2.55 7.93 -2.39 -0.02 2.53 16 32 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.06 2.20 7.58 -2.39 -0.02 2.18 16 35 H 0.41 6.90 8.62 -92.71 -0.80 6.10 16 36 H 0.41 5.29 8.44 -92.71 -0.78 4.51 16 37 H 0.11 1.95 8.10 -2.39 -0.02 1.93 16 38 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 40 H 0.16 0.56 8.06 -2.91 -0.02 0.54 16 41 H 0.15 0.83 8.06 -2.91 -0.02 0.81 16 42 H 0.13 1.68 8.06 -2.91 -0.02 1.66 16 43 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 45 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 46 H 0.05 3.12 6.04 -2.39 -0.01 3.11 16 Total: -1.00 -73.29 383.70 -0.53 -73.82 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -0.57 Total: 18.82 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: 5.79 Total: 13.95 kcal Atomic # 7 Polarization: -118.76 SS G_CDS: -6.41 Total: -125.17 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.06 Total: -23.87 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 16 Polarization: -3.11 SS G_CDS: -1.30 Total: -4.41 kcal Total: -73.29 -0.53 -73.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609805428.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.741 kcal (2) G-P(sol) polarization free energy of solvation -73.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds