Wall clock time and date at job start Wed Apr 1 2020 04:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99717 * 2 1 4 4 C 1.52994 * 109.47032 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.47075 * 65.00034 * 4 3 2 6 6 C 1.46498 * 119.99775 * 274.99539 * 5 4 3 7 7 C 1.50693 * 109.47579 * 280.04023 * 6 5 4 8 8 H 1.08004 * 119.99637 * 4.27929 * 7 6 5 9 9 C 1.37878 * 120.00306 * 184.26994 * 7 6 5 10 10 N 1.31515 * 119.99964 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00119 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47095 * 60.00320 * 11 9 7 13 13 H 1.48496 * 109.47100 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47275 * 300.00290 * 11 9 7 15 15 S 1.65602 * 119.99946 * 95.00342 * 5 4 3 16 16 O 1.42102 * 106.40061 * 330.05564 * 15 5 4 17 17 O 1.42096 * 106.39824 * 197.13945 * 15 5 4 18 18 N 1.65598 * 107.22049 * 83.59761 * 15 5 4 19 19 C 1.46497 * 119.99732 * 65.36647 * 18 15 5 20 20 C 1.53006 * 109.46788 * 165.67643 * 19 18 15 21 21 C 1.53006 * 109.46927 * 179.97438 * 20 19 18 22 22 N 1.46498 * 109.46927 * 179.97438 * 21 20 19 23 23 C 1.34437 * 126.81808 * 125.00141 * 22 21 20 24 24 N 1.30828 * 108.07342 * 180.02562 * 23 22 21 25 25 C 1.33240 * 109.83462 * 0.02562 * 24 23 22 26 26 N 1.30714 * 108.94268 * 0.26537 * 25 24 23 27 27 H 1.09000 * 109.46892 * 299.99307 * 1 2 3 28 28 H 1.08992 * 109.47672 * 59.99975 * 1 2 3 29 29 H 1.09006 * 109.46888 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47144 * 59.99850 * 3 2 1 31 31 H 1.08998 * 109.46913 * 300.00257 * 3 2 1 32 32 H 1.08997 * 109.47272 * 305.00062 * 4 3 2 33 33 H 1.09001 * 109.47227 * 184.99895 * 4 3 2 34 34 H 1.09000 * 109.46912 * 40.04780 * 6 5 4 35 35 H 1.09001 * 109.46651 * 160.04284 * 6 5 4 36 36 H 0.96994 * 120.00088 * 179.97438 * 10 9 7 37 37 H 0.97003 * 119.99853 * 245.36760 * 18 15 5 38 38 H 1.08995 * 109.47400 * 45.68170 * 19 18 15 39 39 H 1.08998 * 109.47423 * 285.67194 * 19 18 15 40 40 H 1.08999 * 109.46927 * 60.00578 * 20 19 18 41 41 H 1.08991 * 109.47165 * 299.99826 * 20 19 18 42 42 H 1.08999 * 109.46559 * 60.00126 * 21 20 19 43 43 H 1.08999 * 109.47136 * 300.00354 * 21 20 19 44 44 H 1.07999 * 125.96057 * 359.97438 * 23 22 21 45 45 H 1.07999 * 125.53049 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.0004 -0.8949 -1.3782 7 6 5.2422 -1.4349 -0.7170 8 1 5.9076 -0.7668 -0.1904 9 6 5.5289 -2.7819 -0.7842 10 7 4.7188 -3.5954 -1.4257 11 14 7.0679 -3.4513 0.0360 12 1 7.0156 -3.1680 1.4928 13 1 7.1461 -4.9183 -0.1808 14 1 8.2656 -2.7999 -0.5523 15 16 4.4453 1.5131 -2.5263 16 8 3.7022 2.7200 -2.4232 17 8 4.4196 0.6806 -3.6776 18 7 6.0316 1.9179 -2.2772 19 6 7.0642 0.8789 -2.2954 20 6 8.4436 1.5327 -2.3999 21 6 9.5222 0.4476 -2.4183 22 7 10.8429 1.0735 -2.5190 23 6 11.8844 0.8953 -1.6877 24 7 12.8780 1.6291 -2.1189 25 6 12.5104 2.2873 -3.2175 26 7 11.2703 1.9844 -3.4987 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8514 0.5683 0.8409 33 1 3.9784 2.1766 0.0889 34 1 3.1189 -1.3161 -0.8948 35 1 4.0021 -1.1689 -2.4332 36 1 4.9206 -4.5429 -1.4733 37 1 6.2770 2.8430 -2.1192 38 1 6.9064 0.2248 -3.1528 39 1 7.0079 0.2945 -1.3771 40 1 8.6016 2.1868 -1.5424 41 1 8.5001 2.1171 -3.3181 42 1 9.3644 -0.2070 -3.2755 43 1 9.4655 -0.1366 -1.4998 44 1 11.8981 0.2582 -0.8158 45 1 13.1344 2.9645 -3.7817 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619707387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:55 Heat of formation + Delta-G solvation = -30.609309 kcal Electronic energy + Delta-G solvation = -29491.079449 eV Core-core repulsion = 25286.975863 eV Total energy + Delta-G solvation = -4204.103586 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.13308 -37.73964 -36.81750 -36.42269 -35.36373 -35.23128 -34.07361 -32.61747 -31.31521 -30.43563 -29.50409 -26.80315 -25.73478 -25.63725 -22.87887 -22.56707 -22.06328 -21.80067 -21.19148 -18.86280 -17.49338 -17.27862 -16.95930 -16.50966 -16.08246 -15.93010 -15.67145 -15.53684 -15.11561 -14.96947 -14.67318 -14.47624 -14.30860 -14.13241 -13.52156 -13.18179 -12.95609 -12.65799 -12.36980 -12.14431 -12.02087 -11.94182 -11.78413 -11.67381 -11.48650 -11.33320 -11.24270 -11.12164 -11.07299 -10.93492 -10.66026 -10.42901 -10.12841 -10.10252 -9.90770 -9.83742 -9.78025 -9.29370 -9.07485 -8.49871 -8.04578 -6.11301 -4.17441 1.22298 1.53766 2.20575 2.85299 3.14428 3.23831 3.26916 3.47191 4.09473 4.16547 4.20686 4.30117 4.34433 4.71433 4.79481 4.95851 5.02169 5.15073 5.21765 5.31557 5.33415 5.42883 5.48100 5.53739 5.64592 5.69445 5.77904 5.78452 5.86346 5.93674 6.08415 6.16231 6.30208 6.31297 6.35673 6.56480 6.67902 7.22492 7.45421 7.53366 7.55679 7.75019 7.88287 7.96010 8.18455 8.86051 9.46046 10.96702 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.010908 B = 0.003605 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.221896 B = 7764.070497 C = 9558.916297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.042 3.958 4 C 0.138 3.862 5 N -0.984 5.984 6 C 0.242 3.758 7 C -0.538 4.538 8 H 0.061 0.939 9 C 0.065 3.935 10 N -0.884 5.884 11 Si 0.889 3.111 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 S 2.783 3.217 16 O -1.003 7.003 17 O -0.976 6.976 18 N -1.131 6.131 19 C 0.120 3.880 20 C -0.134 4.134 21 C 0.126 3.874 22 N -0.372 5.372 23 C 0.253 3.747 24 N -0.553 5.553 25 C 0.191 3.809 26 N -0.317 5.317 27 H 0.033 0.967 28 H 0.035 0.965 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.264 0.736 37 H 0.406 0.594 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.110 0.890 44 H 0.218 0.782 45 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.951 9.552 2.768 11.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C -0.037 4.037 4 C 0.010 3.990 5 N -0.826 5.826 6 C 0.121 3.879 7 C -0.578 4.578 8 H 0.079 0.921 9 C -0.138 4.138 10 N -0.522 5.522 11 Si 0.717 3.283 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.203 1.203 15 S 2.791 3.209 16 O -0.987 6.987 17 O -0.959 6.959 18 N -0.889 5.889 19 C -0.007 4.007 20 C -0.174 4.174 21 C 0.003 3.997 22 N -0.163 5.163 23 C -0.044 4.044 24 N -0.280 5.280 25 C -0.112 4.112 26 N -0.145 5.145 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.101 0.899 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.238 0.762 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.116 0.884 43 H 0.128 0.872 44 H 0.235 0.765 45 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 4.274 9.479 1.458 10.500 hybrid contribution 0.890 -0.150 1.102 1.425 sum 5.165 9.329 2.560 10.967 Atomic orbital electron populations 1.22701 0.82391 1.02425 0.99111 1.88102 1.18409 1.27023 1.95155 1.23113 0.95396 0.85212 0.99933 1.21042 0.91382 0.97471 0.89075 1.57648 1.78509 1.19405 1.26997 1.19323 0.98218 0.71374 0.99017 1.21485 1.08314 0.92946 1.35022 0.92118 1.24936 0.96648 0.96934 0.95284 1.69923 1.36718 1.04284 1.41290 0.86732 0.83349 0.78242 0.79974 1.20283 1.21272 1.20313 1.01835 0.72598 0.72361 0.74135 1.93545 1.69682 1.47717 1.87760 1.93583 1.86256 1.68608 1.47447 1.55991 1.26106 1.16028 1.90789 1.21285 0.85165 0.89497 1.04755 1.22020 0.93386 0.97980 1.03999 1.21923 0.77139 0.95248 1.05354 1.50648 1.12788 1.33040 1.19822 1.26110 0.83342 0.98078 0.96843 1.70529 1.29994 1.13630 1.13894 1.25985 0.91566 0.99512 0.94101 1.78043 1.14505 1.09630 1.12331 0.94819 0.94607 0.89862 0.93275 0.93072 0.89079 0.90597 0.92829 0.93046 0.92580 0.76200 0.89855 0.89162 0.90972 0.89989 0.88373 0.87169 0.76527 0.76903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.59 8.99 -35.23 -0.32 -6.91 16 3 C 0.04 0.66 6.28 37.15 0.23 0.90 16 4 C 0.14 2.24 5.75 -4.04 -0.02 2.22 16 5 N -0.98 -19.07 2.83 -115.67 -0.33 -19.39 16 6 C 0.24 5.74 5.32 -5.20 -0.03 5.71 16 7 C -0.54 -12.87 8.51 -34.44 -0.29 -13.16 16 8 H 0.06 1.34 6.46 -52.48 -0.34 1.00 16 9 C 0.07 1.65 5.46 -17.82 -0.10 1.55 16 10 N -0.88 -24.25 13.29 55.43 0.74 -23.51 16 11 Si 0.89 18.88 29.54 -169.99 -5.02 13.86 16 12 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 13 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 14 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 15 S 2.78 52.07 6.07 -107.50 -0.65 51.42 16 16 O -1.00 -19.37 17.17 -57.17 -0.98 -20.35 16 17 O -0.98 -22.03 16.01 -57.17 -0.92 -22.95 16 18 N -1.13 -16.56 6.06 -10.61 -0.06 -16.62 16 19 C 0.12 1.72 6.21 -4.04 -0.03 1.69 16 20 C -0.13 -1.53 5.56 -26.72 -0.15 -1.68 16 21 C 0.13 1.35 6.55 -4.04 -0.03 1.32 16 22 N -0.37 -4.35 3.70 -62.63 -0.23 -4.58 16 23 C 0.25 2.66 12.63 -90.65 -1.14 1.52 16 24 N -0.55 -6.75 11.19 -15.83 -0.18 -6.93 16 25 C 0.19 2.20 13.03 -91.81 -1.20 1.00 16 26 N -0.32 -4.14 12.56 29.29 0.37 -3.77 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.83 7.96 -51.93 -0.41 0.42 16 32 H 0.09 1.51 8.09 -51.93 -0.42 1.09 16 33 H 0.08 1.02 7.79 -51.93 -0.40 0.61 16 34 H 0.05 1.38 6.56 -51.93 -0.34 1.04 16 35 H 0.05 1.37 6.77 -51.93 -0.35 1.02 16 36 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.41 4.83 8.65 -34.47 -0.30 4.54 16 38 H 0.08 1.34 7.76 -51.93 -0.40 0.94 16 39 H 0.09 1.37 5.85 -51.93 -0.30 1.07 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.11 0.99 8.09 -51.93 -0.42 0.57 16 44 H 0.22 1.40 8.06 -52.49 -0.42 0.97 16 45 H 0.21 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 390.42 15.07 5.88 5.88 Total: -1.00 -34.11 390.42 -9.97 -44.08 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -6.63 Total: 7.17 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -1.64 Total: 2.60 kcal Atomic # 7 Polarization: -75.11 SS G_CDS: 0.30 Total: -74.80 kcal Atomic # 8 Polarization: -47.99 SS G_CDS: -2.21 Total: -50.21 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.86 kcal Atomic # 16 Polarization: 52.07 SS G_CDS: -0.65 Total: 51.42 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.11 -9.97 -44.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619707387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.474 kcal (2) G-P(sol) polarization free energy of solvation -34.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds