Wall clock time and date at job start Wed Apr 1 2020 04:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99717 * 2 1 4 4 C 1.52994 * 109.47032 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.47075 * 65.00034 * 4 3 2 6 6 C 1.46498 * 119.99775 * 274.99539 * 5 4 3 7 7 C 1.50693 * 109.47579 * 280.04023 * 6 5 4 8 8 H 1.08004 * 119.99637 * 4.27929 * 7 6 5 9 9 C 1.37878 * 120.00306 * 184.26994 * 7 6 5 10 10 N 1.31515 * 119.99964 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00119 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47095 * 60.00320 * 11 9 7 13 13 H 1.48496 * 109.47100 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47275 * 300.00290 * 11 9 7 15 15 S 1.65602 * 119.99946 * 95.00342 * 5 4 3 16 16 O 1.42102 * 106.40061 * 330.05564 * 15 5 4 17 17 O 1.42096 * 106.39824 * 197.13945 * 15 5 4 18 18 N 1.65598 * 107.22049 * 83.59761 * 15 5 4 19 19 C 1.46497 * 119.99732 * 65.36647 * 18 15 5 20 20 C 1.53006 * 109.46788 * 165.67643 * 19 18 15 21 21 C 1.53006 * 109.46927 * 179.97438 * 20 19 18 22 22 N 1.46498 * 109.46927 * 179.97438 * 21 20 19 23 23 C 1.34437 * 126.81808 * 125.00141 * 22 21 20 24 24 N 1.30828 * 108.07342 * 180.02562 * 23 22 21 25 25 C 1.33240 * 109.83462 * 0.02562 * 24 23 22 26 26 N 1.30714 * 108.94268 * 0.26537 * 25 24 23 27 27 H 1.09000 * 109.46892 * 299.99307 * 1 2 3 28 28 H 1.08992 * 109.47672 * 59.99975 * 1 2 3 29 29 H 1.09006 * 109.46888 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47144 * 59.99850 * 3 2 1 31 31 H 1.08998 * 109.46913 * 300.00257 * 3 2 1 32 32 H 1.08997 * 109.47272 * 305.00062 * 4 3 2 33 33 H 1.09001 * 109.47227 * 184.99895 * 4 3 2 34 34 H 1.09000 * 109.46912 * 40.04780 * 6 5 4 35 35 H 1.09001 * 109.46651 * 160.04284 * 6 5 4 36 36 H 0.96994 * 120.00088 * 179.97438 * 10 9 7 37 37 H 0.97003 * 119.99853 * 245.36760 * 18 15 5 38 38 H 1.08995 * 109.47400 * 45.68170 * 19 18 15 39 39 H 1.08998 * 109.47423 * 285.67194 * 19 18 15 40 40 H 1.08999 * 109.46927 * 60.00578 * 20 19 18 41 41 H 1.08991 * 109.47165 * 299.99826 * 20 19 18 42 42 H 1.08999 * 109.46559 * 60.00126 * 21 20 19 43 43 H 1.08999 * 109.47136 * 300.00354 * 21 20 19 44 44 H 1.07999 * 125.96057 * 359.97438 * 23 22 21 45 45 H 1.07999 * 125.53049 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.0004 -0.8949 -1.3782 7 6 5.2422 -1.4349 -0.7170 8 1 5.9076 -0.7668 -0.1904 9 6 5.5289 -2.7819 -0.7842 10 7 4.7188 -3.5954 -1.4257 11 14 7.0679 -3.4513 0.0360 12 1 7.0156 -3.1680 1.4928 13 1 7.1461 -4.9183 -0.1808 14 1 8.2656 -2.7999 -0.5523 15 16 4.4453 1.5131 -2.5263 16 8 3.7022 2.7200 -2.4232 17 8 4.4196 0.6806 -3.6776 18 7 6.0316 1.9179 -2.2772 19 6 7.0642 0.8789 -2.2954 20 6 8.4436 1.5327 -2.3999 21 6 9.5222 0.4476 -2.4183 22 7 10.8429 1.0735 -2.5190 23 6 11.8844 0.8953 -1.6877 24 7 12.8780 1.6291 -2.1189 25 6 12.5104 2.2873 -3.2175 26 7 11.2703 1.9844 -3.4987 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8514 0.5683 0.8409 33 1 3.9784 2.1766 0.0889 34 1 3.1189 -1.3161 -0.8948 35 1 4.0021 -1.1689 -2.4332 36 1 4.9206 -4.5429 -1.4733 37 1 6.2770 2.8430 -2.1192 38 1 6.9064 0.2248 -3.1528 39 1 7.0079 0.2945 -1.3771 40 1 8.6016 2.1868 -1.5424 41 1 8.5001 2.1171 -3.3181 42 1 9.3644 -0.2070 -3.2755 43 1 9.4655 -0.1366 -1.4998 44 1 11.8981 0.2582 -0.8158 45 1 13.1344 2.9645 -3.7817 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619707387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:54 Heat of formation + Delta-G solvation = -55.414369 kcal Electronic energy + Delta-G solvation = -29492.155077 eV Core-core repulsion = 25286.975863 eV Total energy + Delta-G solvation = -4205.179214 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.146 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.95188 -39.03915 -38.33201 -37.58507 -36.91818 -36.84000 -35.09152 -34.45298 -32.15863 -31.42911 -30.98249 -28.42903 -26.97942 -26.67838 -24.55830 -23.57810 -23.23297 -22.85647 -22.11483 -20.31814 -18.77413 -18.55935 -18.36021 -18.16007 -17.35344 -17.06479 -16.92775 -16.78252 -16.39465 -16.09442 -15.88927 -15.76940 -15.48528 -14.98703 -14.96262 -14.40505 -14.18837 -13.99211 -13.86101 -13.47295 -13.37752 -13.23510 -13.16772 -13.11563 -12.84878 -12.73019 -12.69301 -12.59548 -12.41570 -12.18561 -12.02143 -11.95451 -11.75120 -11.57782 -10.98794 -10.77779 -10.63023 -10.53535 -10.44211 -10.33985 -9.67604 -8.02387 -6.15997 -0.28771 0.72978 1.40400 1.50101 1.55927 1.62498 2.03312 2.04988 2.53211 2.63186 3.01116 3.30292 3.42549 3.55346 3.57820 3.86061 3.88643 4.03225 4.17624 4.19970 4.23824 4.41646 4.45129 4.51508 4.53000 4.56463 4.60129 4.66846 4.80009 4.85946 4.94302 5.04762 5.13377 5.25691 5.31194 5.51706 5.55334 5.67639 5.87190 5.92182 5.97860 6.23159 6.26919 6.41614 6.96048 7.14542 7.52896 9.05968 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.010908 B = 0.003605 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.221896 B = 7764.070497 C = 9558.916297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.038 3.962 4 C 0.128 3.872 5 N -0.988 5.988 6 C 0.261 3.739 7 C -0.532 4.532 8 H 0.083 0.917 9 C 0.008 3.992 10 N -0.933 5.933 11 Si 0.953 3.047 12 H -0.270 1.270 13 H -0.302 1.302 14 H -0.241 1.241 15 S 2.797 3.203 16 O -1.008 7.008 17 O -1.019 7.019 18 N -1.114 6.114 19 C 0.121 3.879 20 C -0.119 4.119 21 C 0.124 3.876 22 N -0.380 5.380 23 C 0.259 3.741 24 N -0.578 5.578 25 C 0.190 3.810 26 N -0.353 5.353 27 H 0.060 0.940 28 H 0.039 0.961 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.041 0.959 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.026 0.974 35 H 0.012 0.988 36 H 0.260 0.740 37 H 0.422 0.578 38 H 0.060 0.940 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.091 0.909 43 H 0.135 0.865 44 H 0.256 0.744 45 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.909 10.976 4.855 13.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C -0.040 4.040 4 C 0.002 3.998 5 N -0.828 5.828 6 C 0.138 3.862 7 C -0.571 4.571 8 H 0.101 0.899 9 C -0.191 4.191 10 N -0.573 5.573 11 Si 0.777 3.223 12 H -0.195 1.195 13 H -0.228 1.228 14 H -0.164 1.164 15 S 2.805 3.195 16 O -0.992 6.992 17 O -1.003 7.003 18 N -0.877 5.877 19 C -0.006 4.006 20 C -0.159 4.159 21 C 0.002 3.998 22 N -0.170 5.170 23 C -0.037 4.037 24 N -0.307 5.307 25 C -0.112 4.112 26 N -0.181 5.181 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.107 0.893 33 H 0.128 0.872 34 H 0.044 0.956 35 H 0.030 0.970 36 H 0.069 0.931 37 H 0.258 0.742 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.109 0.891 43 H 0.153 0.847 44 H 0.272 0.728 45 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 6.226 10.969 3.557 13.105 hybrid contribution 0.224 -0.523 0.456 0.729 sum 6.450 10.446 4.014 12.916 Atomic orbital electron populations 1.22871 0.80606 1.03090 1.00574 1.88052 1.20616 1.28495 1.95442 1.23221 0.94934 0.84730 1.01127 1.21374 0.92225 0.98814 0.87363 1.57489 1.79311 1.17613 1.28408 1.18782 0.97428 0.73805 0.96199 1.21809 1.08144 0.93197 1.33992 0.89917 1.25864 0.99951 0.97413 0.95888 1.70113 1.39236 1.04365 1.43616 0.85696 0.80650 0.76748 0.79198 1.19548 1.22835 1.16397 1.01196 0.73302 0.71670 0.73322 1.93529 1.70519 1.47427 1.87682 1.93532 1.87145 1.69879 1.49717 1.55554 1.24619 1.17174 1.90312 1.21274 0.86524 0.89315 1.03507 1.21846 0.91668 0.98119 1.04236 1.21983 0.76650 0.94864 1.06342 1.50662 1.13195 1.33191 1.19949 1.26895 0.82387 0.97381 0.97064 1.70567 1.30948 1.14616 1.14528 1.26565 0.91413 0.99287 0.93970 1.78000 1.15460 1.10966 1.13684 0.92148 0.94233 0.89755 0.89693 0.94075 0.89294 0.87179 0.95597 0.97040 0.93070 0.74190 0.92178 0.89451 0.89355 0.90911 0.89061 0.84749 0.72821 0.74417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 11.01 113.37 1.25 1.92 16 2 O -0.41 -14.59 8.99 -148.98 -1.34 -15.93 16 3 C 0.04 1.15 6.28 71.98 0.45 1.60 16 4 C 0.13 3.98 5.75 86.38 0.50 4.48 16 5 N -0.99 -38.20 2.83 -519.86 -1.47 -39.67 16 6 C 0.26 12.77 5.32 85.63 0.46 13.22 16 7 C -0.53 -25.35 8.51 25.60 0.22 -25.13 16 8 H 0.08 3.49 6.46 -2.91 -0.02 3.47 16 9 C 0.01 0.39 5.46 84.65 0.46 0.85 16 10 N -0.93 -52.82 13.29 21.45 0.28 -52.54 16 11 Si 0.95 37.59 29.54 68.60 2.03 39.61 16 12 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16 13 H -0.30 -12.59 7.11 99.48 0.71 -11.88 16 14 H -0.24 -8.00 7.11 99.48 0.71 -7.29 16 15 S 2.80 104.29 6.07 -56.49 -0.34 103.95 16 16 O -1.01 -37.89 17.17 -128.00 -2.20 -40.09 16 17 O -1.02 -47.60 16.01 -128.00 -2.05 -49.65 16 18 N -1.11 -31.01 6.06 -187.49 -1.14 -32.14 16 19 C 0.12 3.29 6.21 86.38 0.54 3.83 16 20 C -0.12 -2.46 5.56 30.60 0.17 -2.29 16 21 C 0.12 2.34 6.55 86.38 0.57 2.90 16 22 N -0.38 -7.94 3.70 -352.05 -1.30 -9.25 16 23 C 0.26 4.64 12.63 180.36 2.28 6.92 16 24 N -0.58 -12.80 11.19 -204.00 -2.28 -15.09 16 25 C 0.19 4.04 13.03 180.77 2.36 6.40 16 26 N -0.35 -8.68 12.56 -61.25 -0.77 -9.45 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 30 H 0.09 1.93 8.14 -2.39 -0.02 1.92 16 31 H 0.04 1.31 7.96 -2.39 -0.02 1.29 16 32 H 0.09 2.81 8.09 -2.39 -0.02 2.79 16 33 H 0.11 2.62 7.79 -2.39 -0.02 2.60 16 34 H 0.03 1.40 6.56 -2.39 -0.02 1.39 16 35 H 0.01 0.65 6.77 -2.39 -0.02 0.64 16 36 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 37 H 0.42 9.05 8.65 -96.74 -0.84 8.21 16 38 H 0.06 1.94 7.76 -2.39 -0.02 1.93 16 39 H 0.09 2.46 5.85 -2.39 -0.01 2.45 16 40 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.13 1.88 8.09 -2.39 -0.02 1.86 16 44 H 0.26 2.16 8.06 -2.91 -0.02 2.13 16 45 H 0.24 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -76.46 390.42 -1.17 -77.63 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: 0.17 Total: 27.92 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: 9.24 Total: 14.70 kcal Atomic # 7 Polarization: -151.46 SS G_CDS: -6.67 Total: -158.14 kcal Atomic # 8 Polarization: -100.09 SS G_CDS: -5.59 Total: -105.67 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 2.03 Total: 39.61 kcal Atomic # 16 Polarization: 104.29 SS G_CDS: -0.34 Total: 103.95 kcal Total: -76.46 -1.17 -77.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619707387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.213 kcal (2) G-P(sol) polarization free energy of solvation -76.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds