Wall clock time and date at job start Wed Apr 1 2020 04:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42898 * 110.27301 * 59.01577 * 9 7 2 11 11 C 1.54593 * 110.30772 * 296.93014 * 9 7 2 12 12 C 1.55099 * 102.84490 * 219.18689 * 11 9 7 13 13 N 1.48528 * 103.28381 * 37.30637 * 12 11 9 14 14 C 1.46907 * 111.00111 * 200.33449 * 13 12 11 15 15 C 1.53006 * 109.46855 * 287.39512 * 14 13 12 16 16 C 1.50700 * 109.47029 * 179.97438 * 15 14 13 17 17 O 1.21297 * 119.99995 * 0.02562 * 16 15 14 18 18 C 1.46857 * 119.99952 * 179.97438 * 16 15 14 19 19 C 1.40011 * 120.12500 * 359.73072 * 18 16 15 20 20 C 1.37606 * 119.93711 * 179.76740 * 19 18 16 21 21 C 1.39101 * 120.30711 * 0.56808 * 20 19 18 22 22 C 1.39356 * 120.08773 * 359.62383 * 21 20 19 23 23 C 1.38183 * 119.98273 * 0.11827 * 22 21 20 24 24 O 1.36153 * 120.75642 * 180.25975 * 22 21 20 25 25 C 1.43163 * 116.70476 * 342.87469 * 24 22 21 26 26 C 1.53459 * 108.23600 * 46.13658 * 25 24 22 27 27 O 1.35924 * 119.21982 * 179.53863 * 21 20 19 28 28 C 1.47903 * 105.82181 * 320.84576 * 13 12 11 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 0.96691 * 114.00808 * 300.70591 * 10 9 7 31 31 H 1.09001 * 110.72299 * 337.48875 * 11 9 7 32 32 H 1.08998 * 110.72477 * 100.76720 * 11 9 7 33 33 H 1.09001 * 110.59474 * 278.87433 * 12 11 9 34 34 H 1.09006 * 110.82947 * 155.84984 * 12 11 9 35 35 H 1.08997 * 109.46962 * 47.39160 * 14 13 12 36 36 H 1.08993 * 109.47234 * 167.39885 * 14 13 12 37 37 H 1.09000 * 109.46725 * 299.99979 * 15 14 13 38 38 H 1.09007 * 109.46870 * 59.99657 * 15 14 13 39 39 H 1.07992 * 120.03145 * 0.04460 * 19 18 16 40 40 H 1.08001 * 119.84875 * 180.30437 * 20 19 18 41 41 H 1.08001 * 120.02921 * 179.97438 * 23 22 21 42 42 H 1.09008 * 109.70643 * 165.81982 * 25 24 22 43 43 H 1.08994 * 109.71232 * 286.44613 * 25 24 22 44 44 H 1.09002 * 109.71076 * 59.85005 * 26 25 24 45 45 H 1.09004 * 109.70949 * 180.47121 * 26 25 24 46 46 H 1.09001 * 109.91924 * 265.97928 * 28 13 12 47 47 H 1.08997 * 110.08057 * 144.77473 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4107 -2.5806 -1.1583 11 6 0.4084 -2.6381 1.2834 12 6 0.5678 -4.1393 1.6394 13 7 1.9790 -4.4280 1.2771 14 6 2.1891 -5.8693 1.0855 15 6 2.1623 -6.5735 2.4436 16 6 2.3771 -8.0521 2.2470 17 8 2.5365 -8.4986 1.1306 18 6 2.3947 -8.9522 3.4073 19 6 2.2176 -8.4386 4.6978 20 6 2.2300 -9.2861 5.7818 21 6 2.4294 -10.6511 5.6034 22 6 2.6103 -11.1692 4.3224 23 6 2.5941 -10.3260 3.2278 24 8 2.8014 -12.5037 4.1317 25 6 3.1811 -13.2699 5.2799 26 6 2.2716 -12.8668 6.4484 27 8 2.4469 -11.4668 6.6906 28 6 2.2340 -3.6841 0.0244 29 1 -0.4850 0.8401 -0.0004 30 1 -0.2437 -1.8713 -1.2191 31 1 0.8111 -2.0088 2.0771 32 1 -0.6362 -2.3949 1.0894 33 1 -0.1141 -4.7485 1.0461 34 1 0.4024 -4.3048 2.7040 35 1 1.3978 -6.2707 0.4524 36 1 3.1552 -6.0355 0.6091 37 1 2.9535 -6.1719 3.0767 38 1 1.1961 -6.4072 2.9201 39 1 2.0671 -7.3790 4.8418 40 1 2.0884 -8.8891 6.7761 41 1 2.7347 -10.7266 2.2348 42 1 3.0598 -14.3325 5.0692 43 1 4.2203 -13.0612 5.5339 44 1 1.2317 -13.0679 6.1912 45 1 2.5462 -13.4312 7.3396 46 1 2.0602 -4.3325 -0.8344 47 1 3.2598 -3.3160 0.0099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000646033066.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:18 Heat of formation + Delta-G solvation = -124.821948 kcal Electronic energy + Delta-G solvation = -29712.780329 eV Core-core repulsion = 25440.395017 eV Total energy + Delta-G solvation = -4272.385312 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.71595 -39.86689 -38.30003 -37.74510 -37.49493 -35.00523 -32.35906 -32.04930 -31.46697 -31.12714 -29.45371 -28.33382 -27.79216 -25.62423 -24.75439 -23.71828 -22.53369 -21.92121 -20.30552 -19.70372 -19.34321 -18.99771 -17.70231 -17.59109 -17.04170 -16.26619 -15.89315 -15.59936 -15.46519 -15.22064 -14.87809 -14.85287 -14.78429 -14.29145 -14.26207 -14.07586 -13.76356 -13.65040 -13.45997 -12.95186 -12.55244 -12.27829 -12.12709 -12.08973 -11.85983 -11.58799 -11.54224 -11.31472 -11.11165 -10.97713 -10.89274 -10.72000 -10.45802 -10.37317 -10.25085 -9.94263 -9.74192 -9.10706 -9.09296 -8.55544 -8.53014 -8.06456 -7.77247 -6.16234 -4.21964 0.32818 0.92093 2.15579 2.54217 2.69949 3.25260 3.33795 3.38848 3.40223 3.67152 3.85190 4.12194 4.27471 4.35601 4.36764 4.58835 4.69673 4.77809 4.86917 4.90417 4.96920 5.05831 5.12582 5.20811 5.31221 5.49291 5.65640 5.69809 5.75478 5.82723 5.91521 5.96362 6.11567 6.13058 6.16363 6.24427 6.29148 6.39955 6.51751 6.53444 6.91629 6.97644 7.09117 7.32850 7.44642 7.56380 7.69210 7.74981 7.88339 8.21213 8.80107 9.44928 9.55768 10.91460 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.029462 B = 0.001776 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.132888 B =15757.674069 C =16147.458295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.067 3.933 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.525 4.525 8 H 0.063 0.937 9 C 0.241 3.759 10 O -0.595 6.595 11 C -0.116 4.116 12 C 0.028 3.972 13 N -0.515 5.515 14 C 0.056 3.944 15 C -0.158 4.158 16 C 0.401 3.599 17 O -0.451 6.451 18 C -0.163 4.163 19 C -0.063 4.063 20 C -0.127 4.127 21 C 0.079 3.921 22 C 0.034 3.966 23 C -0.055 4.055 24 O -0.306 6.306 25 C 0.020 3.980 26 C 0.019 3.981 27 O -0.304 6.304 28 C 0.055 3.945 29 H 0.265 0.735 30 H 0.382 0.618 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.033 0.967 34 H 0.064 0.936 35 H 0.038 0.962 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.148 0.852 40 H 0.142 0.858 41 H 0.146 0.854 42 H 0.124 0.876 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.124 0.876 46 H 0.036 0.964 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.232 -24.522 15.243 29.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.728 3.272 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.081 0.919 9 C 0.201 3.799 10 O -0.404 6.404 11 C -0.155 4.155 12 C -0.099 4.099 13 N -0.239 5.239 14 C -0.073 4.073 15 C -0.195 4.195 16 C 0.278 3.722 17 O -0.326 6.326 18 C -0.164 4.164 19 C -0.081 4.081 20 C -0.145 4.145 21 C 0.033 3.967 22 C -0.011 4.011 23 C -0.074 4.074 24 O -0.220 6.220 25 C -0.056 4.056 26 C -0.056 4.056 27 O -0.218 6.218 28 C -0.072 4.072 29 H 0.075 0.925 30 H 0.233 0.767 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.093 0.907 37 H 0.127 0.873 38 H 0.118 0.882 39 H 0.165 0.835 40 H 0.160 0.840 41 H 0.163 0.837 42 H 0.142 0.858 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.142 0.858 46 H 0.055 0.945 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.907 -25.071 14.962 29.457 hybrid contribution -0.471 0.823 -0.188 0.967 sum 3.435 -24.248 14.775 28.602 Atomic orbital electron populations 1.69671 1.05930 1.27214 1.51219 1.25020 0.95001 0.99450 0.93986 0.86413 0.80198 0.83086 0.77540 1.19658 1.20975 1.20960 1.21745 0.93569 0.90587 1.50488 0.91929 1.19376 0.86528 0.91576 0.82376 1.86099 1.52121 1.54907 1.47290 1.22989 1.00720 0.91441 1.00375 1.23383 0.88370 0.99116 0.99075 1.64744 1.22338 1.05513 1.31345 1.22004 1.01817 0.89051 0.94433 1.21970 1.04919 0.91612 1.01036 1.22422 0.71625 0.90952 0.87234 1.90542 1.36073 1.79311 1.26657 1.20329 1.07216 0.93530 0.95368 1.21310 0.95891 1.00519 0.90380 1.20429 1.03911 0.89582 1.00607 1.19262 1.00470 0.91627 0.85330 1.18735 1.05225 0.84218 0.92898 1.20659 0.97312 0.91109 0.98284 1.86361 1.84925 1.16030 1.34718 1.23652 0.99011 0.97316 0.85611 1.23694 1.00797 0.80335 1.00819 1.86281 1.87905 1.17830 1.29786 1.22823 1.00487 0.95024 0.88883 0.92480 0.76701 0.91370 0.91716 0.94861 0.91718 0.94377 0.90749 0.87297 0.88232 0.83478 0.83972 0.83656 0.85844 0.90316 0.90166 0.85787 0.94536 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.16 10.88 55.43 0.60 -23.56 16 2 C 0.07 1.78 5.26 -17.82 -0.09 1.69 16 3 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.53 -14.24 8.11 -34.44 -0.28 -14.51 16 8 H 0.06 1.70 7.34 -52.49 -0.39 1.31 16 9 C 0.24 6.08 0.99 -90.42 -0.09 5.99 16 10 O -0.59 -15.80 12.92 -35.23 -0.46 -16.26 16 11 C -0.12 -2.69 5.43 -24.78 -0.13 -2.82 16 12 C 0.03 0.54 5.91 -1.81 -0.01 0.53 16 13 N -0.52 -9.87 5.25 -230.34 -1.21 -11.08 16 14 C 0.06 0.91 4.00 -3.82 -0.02 0.90 16 15 C -0.16 -1.95 4.39 -27.88 -0.12 -2.07 16 16 C 0.40 5.13 7.11 -30.82 -0.22 4.91 16 17 O -0.45 -7.17 15.97 5.54 0.09 -7.09 16 18 C -0.16 -1.80 5.87 -105.09 -0.62 -2.42 16 19 C -0.06 -0.56 9.46 -39.15 -0.37 -0.93 16 20 C -0.13 -1.10 9.94 -39.49 -0.39 -1.49 16 21 C 0.08 0.77 6.51 -38.85 -0.25 0.51 16 22 C 0.03 0.36 6.48 -39.19 -0.25 0.10 16 23 C -0.05 -0.63 9.50 -38.95 -0.37 -1.00 16 24 O -0.31 -2.93 10.41 -32.96 -0.34 -3.28 16 25 C 0.02 0.10 7.26 37.40 0.27 0.38 16 26 C 0.02 0.09 7.25 37.40 0.27 0.37 16 27 O -0.30 -2.59 10.40 -32.24 -0.34 -2.93 16 28 C 0.06 1.23 6.13 -2.76 -0.02 1.22 16 29 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 30 H 0.38 10.25 7.17 45.56 0.33 10.58 16 31 H 0.07 1.66 7.86 -51.93 -0.41 1.25 16 32 H 0.06 1.55 8.02 -51.93 -0.42 1.14 16 33 H 0.03 0.64 7.81 -51.93 -0.41 0.24 16 34 H 0.06 1.07 7.80 -51.93 -0.40 0.66 16 35 H 0.04 0.67 7.79 -51.93 -0.40 0.27 16 36 H 0.07 1.23 8.04 -51.93 -0.42 0.82 16 37 H 0.11 1.19 8.08 -51.93 -0.42 0.77 16 38 H 0.10 1.10 7.31 -51.92 -0.38 0.72 16 39 H 0.15 0.99 7.03 -52.49 -0.37 0.62 16 40 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.15 1.70 7.64 -52.49 -0.40 1.30 16 42 H 0.12 0.29 8.14 -51.92 -0.42 -0.13 16 43 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.12 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.04 0.82 7.59 -51.93 -0.39 0.43 16 47 H 0.08 1.77 7.39 -51.93 -0.38 1.39 16 LS Contribution 382.08 15.07 5.76 5.76 Total: -1.00 -31.62 382.08 -9.72 -41.34 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -6.11 Total: 9.90 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -2.69 Total: -8.66 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: -0.61 Total: -34.64 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -1.05 Total: -29.55 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.62 -9.72 -41.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000646033066.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.486 kcal (2) G-P(sol) polarization free energy of solvation -31.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds