Wall clock time and date at job start Wed Apr 1 2020 04:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42898 * 110.27301 * 59.01577 * 9 7 2 11 11 C 1.54593 * 110.30772 * 296.93014 * 9 7 2 12 12 C 1.55099 * 102.84490 * 219.18689 * 11 9 7 13 13 N 1.48528 * 103.28381 * 37.30637 * 12 11 9 14 14 C 1.46907 * 111.00111 * 200.33449 * 13 12 11 15 15 C 1.53006 * 109.46855 * 287.39512 * 14 13 12 16 16 C 1.50700 * 109.47029 * 179.97438 * 15 14 13 17 17 O 1.21297 * 119.99995 * 0.02562 * 16 15 14 18 18 C 1.46857 * 119.99952 * 179.97438 * 16 15 14 19 19 C 1.40011 * 120.12500 * 359.73072 * 18 16 15 20 20 C 1.37606 * 119.93711 * 179.76740 * 19 18 16 21 21 C 1.39101 * 120.30711 * 0.56808 * 20 19 18 22 22 C 1.39356 * 120.08773 * 359.62383 * 21 20 19 23 23 C 1.38183 * 119.98273 * 0.11827 * 22 21 20 24 24 O 1.36153 * 120.75642 * 180.25975 * 22 21 20 25 25 C 1.43163 * 116.70476 * 342.87469 * 24 22 21 26 26 C 1.53459 * 108.23600 * 46.13658 * 25 24 22 27 27 O 1.35924 * 119.21982 * 179.53863 * 21 20 19 28 28 C 1.47903 * 105.82181 * 320.84576 * 13 12 11 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 0.96691 * 114.00808 * 300.70591 * 10 9 7 31 31 H 1.09001 * 110.72299 * 337.48875 * 11 9 7 32 32 H 1.08998 * 110.72477 * 100.76720 * 11 9 7 33 33 H 1.09001 * 110.59474 * 278.87433 * 12 11 9 34 34 H 1.09006 * 110.82947 * 155.84984 * 12 11 9 35 35 H 1.08997 * 109.46962 * 47.39160 * 14 13 12 36 36 H 1.08993 * 109.47234 * 167.39885 * 14 13 12 37 37 H 1.09000 * 109.46725 * 299.99979 * 15 14 13 38 38 H 1.09007 * 109.46870 * 59.99657 * 15 14 13 39 39 H 1.07992 * 120.03145 * 0.04460 * 19 18 16 40 40 H 1.08001 * 119.84875 * 180.30437 * 20 19 18 41 41 H 1.08001 * 120.02921 * 179.97438 * 23 22 21 42 42 H 1.09008 * 109.70643 * 165.81982 * 25 24 22 43 43 H 1.08994 * 109.71232 * 286.44613 * 25 24 22 44 44 H 1.09002 * 109.71076 * 59.85005 * 26 25 24 45 45 H 1.09004 * 109.70949 * 180.47121 * 26 25 24 46 46 H 1.09001 * 109.91924 * 265.97928 * 28 13 12 47 47 H 1.08997 * 110.08057 * 144.77473 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4107 -2.5806 -1.1583 11 6 0.4084 -2.6381 1.2834 12 6 0.5678 -4.1393 1.6394 13 7 1.9790 -4.4280 1.2771 14 6 2.1891 -5.8693 1.0855 15 6 2.1623 -6.5735 2.4436 16 6 2.3771 -8.0521 2.2470 17 8 2.5365 -8.4986 1.1306 18 6 2.3947 -8.9522 3.4073 19 6 2.2176 -8.4386 4.6978 20 6 2.2300 -9.2861 5.7818 21 6 2.4294 -10.6511 5.6034 22 6 2.6103 -11.1692 4.3224 23 6 2.5941 -10.3260 3.2278 24 8 2.8014 -12.5037 4.1317 25 6 3.1811 -13.2699 5.2799 26 6 2.2716 -12.8668 6.4484 27 8 2.4469 -11.4668 6.6906 28 6 2.2340 -3.6841 0.0244 29 1 -0.4850 0.8401 -0.0004 30 1 -0.2437 -1.8713 -1.2191 31 1 0.8111 -2.0088 2.0771 32 1 -0.6362 -2.3949 1.0894 33 1 -0.1141 -4.7485 1.0461 34 1 0.4024 -4.3048 2.7040 35 1 1.3978 -6.2707 0.4524 36 1 3.1552 -6.0355 0.6091 37 1 2.9535 -6.1719 3.0767 38 1 1.1961 -6.4072 2.9201 39 1 2.0671 -7.3790 4.8418 40 1 2.0884 -8.8891 6.7761 41 1 2.7347 -10.7266 2.2348 42 1 3.0598 -14.3325 5.0692 43 1 4.2203 -13.0612 5.5339 44 1 1.2317 -13.0679 6.1912 45 1 2.5462 -13.4312 7.3396 46 1 2.0602 -4.3325 -0.8344 47 1 3.2598 -3.3160 0.0099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000646033066.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:17 Heat of formation + Delta-G solvation = -147.317918 kcal Electronic energy + Delta-G solvation = -29713.755827 eV Core-core repulsion = 25440.395017 eV Total energy + Delta-G solvation = -4273.360810 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.34563 -40.88828 -39.94413 -38.36730 -38.28663 -36.79369 -34.12514 -33.53049 -32.35487 -31.83647 -30.50665 -29.83863 -29.24366 -26.68149 -26.06669 -24.91074 -23.48404 -22.78652 -21.71396 -21.27670 -20.54559 -19.68265 -19.08480 -18.35355 -18.31956 -17.23266 -16.93922 -16.72536 -16.54241 -16.38502 -16.25858 -15.99362 -15.76775 -15.53256 -15.47303 -15.01846 -14.94915 -14.69766 -14.30235 -14.01150 -13.95953 -13.81425 -13.54522 -13.48958 -13.20543 -12.86198 -12.82857 -12.51243 -12.46288 -12.25668 -12.22193 -12.04663 -12.01450 -11.86998 -11.78779 -11.54585 -11.05330 -10.79767 -10.58727 -10.07343 -9.80532 -9.36756 -9.23291 -8.19116 -6.32467 -0.47578 0.21256 1.29996 1.41231 1.44561 1.55549 1.95573 2.15368 2.41495 2.64328 2.77853 3.06433 3.16723 3.37045 3.57060 3.83218 3.89537 3.92233 3.99213 4.04563 4.09184 4.15649 4.26258 4.31890 4.34303 4.41718 4.55135 4.56273 4.59462 4.63945 4.64396 4.74110 4.86222 4.91267 5.00009 5.01554 5.09634 5.13375 5.22628 5.28951 5.45268 5.45949 5.65089 5.79680 5.80518 5.98149 6.15285 6.22166 6.28032 6.50987 6.72055 7.37154 7.46034 8.87159 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.029462 B = 0.001776 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.132888 B =15757.674069 C =16147.458295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.027 3.973 3 Si 0.960 3.040 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.276 1.276 7 C -0.551 4.551 8 H 0.053 0.947 9 C 0.223 3.777 10 O -0.605 6.605 11 C -0.109 4.109 12 C 0.038 3.962 13 N -0.508 5.508 14 C 0.057 3.943 15 C -0.149 4.149 16 C 0.408 3.592 17 O -0.494 6.494 18 C -0.177 4.177 19 C -0.051 4.051 20 C -0.127 4.127 21 C 0.078 3.922 22 C 0.023 3.977 23 C -0.073 4.073 24 O -0.327 6.327 25 C 0.012 3.988 26 C 0.014 3.986 27 O -0.313 6.313 28 C 0.060 3.940 29 H 0.269 0.731 30 H 0.377 0.623 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.032 0.968 34 H 0.104 0.896 35 H 0.023 0.977 36 H 0.067 0.933 37 H 0.132 0.868 38 H 0.123 0.877 39 H 0.175 0.825 40 H 0.167 0.833 41 H 0.129 0.871 42 H 0.153 0.847 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.159 0.841 46 H 0.026 0.974 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.412 -25.144 18.208 31.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.173 4.173 3 Si 0.786 3.214 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.202 1.202 7 C -0.590 4.590 8 H 0.071 0.929 9 C 0.183 3.817 10 O -0.414 6.414 11 C -0.148 4.148 12 C -0.089 4.089 13 N -0.233 5.233 14 C -0.072 4.072 15 C -0.186 4.186 16 C 0.288 3.712 17 O -0.372 6.372 18 C -0.179 4.179 19 C -0.069 4.069 20 C -0.146 4.146 21 C 0.032 3.968 22 C -0.021 4.021 23 C -0.092 4.092 24 O -0.243 6.243 25 C -0.063 4.063 26 C -0.060 4.060 27 O -0.227 6.227 28 C -0.068 4.068 29 H 0.078 0.922 30 H 0.227 0.773 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.122 0.878 35 H 0.041 0.959 36 H 0.085 0.915 37 H 0.150 0.850 38 H 0.141 0.859 39 H 0.192 0.808 40 H 0.185 0.815 41 H 0.147 0.853 42 H 0.171 0.829 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.177 0.823 46 H 0.045 0.955 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.086 -25.718 17.953 31.629 hybrid contribution -0.527 0.901 -1.065 1.491 sum 3.560 -24.816 16.888 30.228 Atomic orbital electron populations 1.69746 1.06771 1.28026 1.50941 1.25695 0.95862 1.02237 0.93508 0.85477 0.78913 0.79352 0.77654 1.19646 1.20716 1.20193 1.21968 0.93386 0.92039 1.51564 0.92851 1.19680 0.87131 0.92118 0.82756 1.86096 1.52213 1.54647 1.48422 1.22765 0.99085 0.94123 0.98800 1.23359 0.88195 0.96006 1.01371 1.64771 1.22322 1.06944 1.29214 1.22020 1.00873 0.87375 0.96893 1.21943 1.07043 0.90754 0.98825 1.22630 0.70101 0.91323 0.87136 1.90539 1.38493 1.79929 1.28284 1.20193 1.09030 0.93001 0.95633 1.21577 0.94276 1.01854 0.89175 1.20769 1.02980 0.89136 1.01667 1.19482 0.99645 0.92445 0.85241 1.18791 1.05572 0.84703 0.93082 1.20648 0.98575 0.91876 0.98080 1.86326 1.85057 1.15828 1.37071 1.24010 0.99230 0.98336 0.84696 1.24025 1.00983 0.78835 1.02197 1.86268 1.87617 1.19417 1.29410 1.22679 0.99481 0.94402 0.90228 0.92200 0.77307 0.92844 0.93257 0.94931 0.87803 0.95873 0.91469 0.84980 0.85936 0.80763 0.81541 0.85306 0.82911 0.90029 0.89897 0.82347 0.95530 0.90822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.32 10.88 21.45 0.23 -49.09 16 2 C 0.03 1.43 5.26 84.66 0.45 1.88 16 3 Si 0.96 42.74 29.54 68.60 2.03 44.77 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.55 -30.25 8.11 25.60 0.21 -30.04 16 8 H 0.05 2.94 7.34 -2.91 -0.02 2.92 16 9 C 0.22 11.37 0.99 -10.66 -0.01 11.36 16 10 O -0.60 -32.90 12.92 -148.98 -1.93 -34.82 16 11 C -0.11 -5.01 5.43 31.86 0.17 -4.84 16 12 C 0.04 1.39 5.91 86.71 0.51 1.90 16 13 N -0.51 -18.90 5.25 -882.67 -4.63 -23.53 16 14 C 0.06 1.81 4.00 86.30 0.34 2.15 16 15 C -0.15 -3.32 4.39 29.85 0.13 -3.18 16 16 C 0.41 10.16 7.11 27.94 0.20 10.35 16 17 O -0.49 -16.18 15.97 -3.08 -0.05 -16.23 16 18 C -0.18 -3.73 5.87 -20.17 -0.12 -3.85 16 19 C -0.05 -0.76 9.46 22.55 0.21 -0.54 16 20 C -0.13 -1.85 9.94 22.33 0.22 -1.63 16 21 C 0.08 1.38 6.51 22.75 0.15 1.53 16 22 C 0.02 0.48 6.48 22.53 0.15 0.63 16 23 C -0.07 -1.69 9.50 22.68 0.22 -1.48 16 24 O -0.33 -6.17 10.41 -83.11 -0.87 -7.04 16 25 C 0.01 0.10 7.26 72.14 0.52 0.63 16 26 C 0.01 0.10 7.25 72.14 0.52 0.63 16 27 O -0.31 -4.61 10.40 -80.52 -0.84 -5.44 16 28 C 0.06 2.72 6.13 86.44 0.53 3.25 16 29 H 0.27 13.73 8.31 -92.70 -0.77 12.96 16 30 H 0.38 20.79 7.17 -74.06 -0.53 20.26 16 31 H 0.05 2.58 7.86 -2.39 -0.02 2.56 16 32 H 0.05 2.38 8.02 -2.39 -0.02 2.36 16 33 H 0.03 1.20 7.81 -2.39 -0.02 1.19 16 34 H 0.10 3.02 7.80 -2.38 -0.02 3.00 16 35 H 0.02 0.81 7.79 -2.39 -0.02 0.79 16 36 H 0.07 2.23 8.04 -2.39 -0.02 2.21 16 37 H 0.13 2.41 8.08 -2.39 -0.02 2.39 16 38 H 0.12 2.22 7.31 -2.38 -0.02 2.21 16 39 H 0.18 1.57 7.03 -2.91 -0.02 1.55 16 40 H 0.17 1.58 8.06 -2.91 -0.02 1.55 16 41 H 0.13 3.29 7.64 -2.91 -0.02 3.27 16 42 H 0.15 0.36 8.14 -2.38 -0.02 0.34 16 43 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.16 0.04 8.14 -2.38 -0.02 0.02 16 46 H 0.03 1.23 7.59 -2.39 -0.02 1.21 16 47 H 0.07 3.36 7.39 -2.39 -0.02 3.34 16 Total: -1.00 -70.26 382.08 -1.17 -71.44 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: 0.47 Total: 31.21 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: 4.41 Total: -11.26 kcal Atomic # 7 Polarization: -68.22 SS G_CDS: -4.40 Total: -72.62 kcal Atomic # 8 Polarization: -59.86 SS G_CDS: -3.68 Total: -63.53 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -70.26 -1.17 -71.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000646033066.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.883 kcal (2) G-P(sol) polarization free energy of solvation -70.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds