Wall clock time and date at job start Wed Apr 1 2020 04:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 120.00073 * 2 1 4 4 H 1.48497 * 109.47070 * 270.00415 * 3 2 1 5 5 H 1.48502 * 109.46496 * 29.99779 * 3 2 1 6 6 H 1.48500 * 109.47072 * 150.00013 * 3 2 1 7 7 C 1.37880 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47084 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47194 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00271 * 180.02562 * 11 10 9 13 13 O 1.21278 * 119.99854 * 359.97438 * 12 11 10 14 14 C 1.50703 * 120.00161 * 179.97438 * 12 11 10 15 15 C 1.53000 * 109.46912 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.46912 * 179.97438 * 15 14 12 17 17 O 1.21300 * 120.00069 * 359.97438 * 16 15 14 18 18 C 1.46863 * 120.00056 * 180.02562 * 16 15 14 19 19 C 1.40014 * 120.07536 * 0.02562 * 18 16 15 20 20 C 1.37756 * 120.04738 * 179.97438 * 19 18 16 21 21 C 1.38865 * 119.94842 * 0.02764 * 20 19 18 22 22 C 1.39118 * 120.33319 * 359.97438 * 21 20 19 23 23 C 1.37942 * 120.24412 * 359.69571 * 22 21 20 24 24 O 1.36511 * 119.58576 * 179.97438 * 22 21 20 25 25 C 1.42893 * 115.93057 * 68.28226 * 24 22 21 26 26 C 1.52062 * 110.76970 * 275.59753 * 25 24 22 27 27 C 1.52072 * 112.36244 * 64.81825 * 26 25 24 28 28 O 1.36273 * 120.12611 * 179.97438 * 21 20 19 29 29 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 31 31 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 32 32 H 1.08998 * 109.47624 * 59.99590 * 10 9 7 33 33 H 1.09002 * 109.47045 * 299.99967 * 10 9 7 34 34 H 0.97005 * 120.00266 * 359.97438 * 11 10 9 35 35 H 1.09001 * 109.46980 * 59.99654 * 14 12 11 36 36 H 1.08992 * 109.47158 * 299.99760 * 14 12 11 37 37 H 1.09002 * 109.47398 * 300.00078 * 15 14 12 38 38 H 1.09001 * 109.47194 * 60.00258 * 15 14 12 39 39 H 1.08000 * 119.97691 * 0.02562 * 19 18 16 40 40 H 1.07999 * 120.02176 * 180.02562 * 20 19 18 41 41 H 1.08001 * 120.21311 * 180.34011 * 23 22 21 42 42 H 1.08994 * 109.21832 * 35.93916 * 25 24 22 43 43 H 1.09000 * 109.21226 * 155.27201 * 25 24 22 44 44 H 1.08997 * 108.90785 * 185.55839 * 26 25 24 45 45 H 1.09000 * 108.90659 * 304.17244 * 26 25 24 46 46 H 1.09002 * 109.20998 * 55.49030 * 27 26 25 47 47 H 1.09002 * 109.20456 * 174.80365 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 7 1.5129 -4.9308 -0.0032 12 6 2.1868 -6.0980 -0.0028 13 8 3.3996 -6.0979 -0.0014 14 6 1.4333 -7.4031 -0.0040 15 6 2.4276 -8.5660 -0.0039 16 6 1.6741 -9.8711 -0.0045 17 8 0.4611 -9.8712 -0.0045 18 6 2.4084 -11.1430 -0.0039 19 6 3.8086 -11.1448 -0.0023 20 6 4.4968 -12.3381 -0.0012 21 6 3.8008 -13.5398 -0.0023 22 6 2.4096 -13.5460 -0.0040 23 6 1.7096 -12.3574 0.0018 24 8 1.7409 -14.7361 -0.0056 25 6 1.8480 -15.5146 1.1878 26 6 3.1156 -16.3542 1.1720 27 6 4.3747 -15.5016 1.1910 28 8 4.4779 -14.7224 -0.0018 29 1 -0.4850 0.8400 -0.0004 30 1 0.6248 -2.5563 -0.8920 31 1 0.6241 -2.5575 0.8880 32 1 2.8714 -3.6047 0.8890 33 1 2.8727 -3.6039 -0.8909 34 1 0.5429 -4.9308 -0.0039 35 1 0.8076 -7.4606 -0.8947 36 1 0.8057 -7.4611 0.8852 37 1 3.0549 -8.5078 -0.8934 38 1 3.0536 -8.5087 0.8866 39 1 4.3494 -10.2100 -0.0010 40 1 5.5768 -12.3391 0.0005 41 1 0.6296 -12.3628 0.0060 42 1 1.8696 -14.8482 2.0501 43 1 0.9826 -16.1728 1.2656 44 1 3.1180 -17.0068 2.0451 45 1 3.1208 -16.9691 0.2720 46 1 4.3436 -14.8352 2.0531 47 1 5.2464 -16.1510 1.2719 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000680151049.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:14 Heat of formation + Delta-G solvation = -138.543263 kcal Electronic energy + Delta-G solvation = -28615.954583 eV Core-core repulsion = 24342.974271 eV Total energy + Delta-G solvation = -4272.980312 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.44301 -40.09000 -39.07640 -38.02038 -37.61246 -34.93067 -33.60673 -32.99911 -32.77523 -31.26734 -30.26348 -29.50651 -27.21810 -26.35097 -24.56491 -23.19133 -23.10506 -22.16665 -20.99702 -20.29007 -19.76468 -18.95200 -17.70514 -17.52828 -16.77657 -16.42654 -16.13580 -16.04162 -15.94610 -15.82415 -15.02744 -14.89838 -14.75329 -14.67894 -14.48567 -14.45576 -14.25210 -13.94629 -13.58794 -13.44333 -12.93869 -12.62236 -12.47417 -12.29993 -12.27132 -11.95339 -11.87152 -11.41547 -11.28444 -11.21293 -11.03113 -11.00036 -10.64841 -10.51234 -10.33461 -10.03366 -9.81998 -9.47268 -9.41254 -9.19524 -9.02677 -8.55134 -8.36036 -6.09588 -4.12633 0.04956 0.69333 1.88585 2.88075 2.89034 2.98654 3.28899 3.29266 3.35387 3.39020 3.51266 3.95691 4.03783 4.09000 4.30290 4.41688 4.48221 4.52302 4.65021 4.66586 4.70645 4.70796 4.79879 4.98037 5.02974 5.04301 5.14802 5.22720 5.27432 5.32988 5.41811 5.51288 5.65404 5.72683 5.74764 5.75498 5.84857 5.96275 6.33269 6.33923 6.56208 6.72961 6.91106 7.00627 7.20681 7.51266 7.61278 7.88264 8.00354 8.27045 8.62900 8.93391 9.52280 11.01951 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.036939 B = 0.001411 C = 0.001372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.825426 B =19834.102476 C =20408.130781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.011 3.989 10 C 0.121 3.879 11 N -0.722 5.722 12 C 0.505 3.495 13 O -0.556 6.556 14 C -0.134 4.134 15 C -0.148 4.148 16 C 0.399 3.601 17 O -0.449 6.449 18 C -0.161 4.161 19 C -0.059 4.059 20 C -0.129 4.129 21 C 0.096 3.904 22 C 0.050 3.950 23 C -0.058 4.058 24 O -0.317 6.317 25 C 0.058 3.942 26 C -0.188 4.188 27 C 0.060 3.940 28 O -0.319 6.319 29 H 0.262 0.738 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.399 0.601 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.148 0.852 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.059 0.941 43 H 0.106 0.894 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.060 0.940 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.704 -34.957 3.813 35.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.026 4.026 10 C -0.001 4.001 11 N -0.371 5.371 12 C 0.291 3.709 13 O -0.435 6.435 14 C -0.174 4.174 15 C -0.186 4.186 16 C 0.276 3.724 17 O -0.324 6.324 18 C -0.162 4.162 19 C -0.078 4.078 20 C -0.148 4.148 21 C 0.052 3.948 22 C 0.006 3.994 23 C -0.076 4.076 24 O -0.233 6.233 25 C -0.017 4.017 26 C -0.226 4.226 27 C -0.014 4.014 28 O -0.236 6.236 29 H 0.072 0.928 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.233 0.767 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.166 0.834 40 H 0.161 0.839 41 H 0.164 0.836 42 H 0.077 0.923 43 H 0.124 0.876 44 H 0.111 0.889 45 H 0.104 0.896 46 H 0.078 0.922 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.777 -34.974 3.540 35.624 hybrid contribution -0.010 0.831 0.280 0.877 sum 5.766 -34.143 3.821 34.837 Atomic orbital electron populations 1.69952 1.06092 1.26883 1.50320 1.24998 0.94885 0.99408 0.94976 0.86513 0.79828 0.83015 0.78201 1.20556 1.21164 1.19738 1.21051 0.93231 0.90406 1.51418 0.92261 1.19335 0.94231 0.91160 0.97892 1.21720 0.96049 0.81603 1.00744 1.46352 1.10673 1.06622 1.73483 1.20515 0.88188 0.85653 0.76542 1.90661 1.14018 1.87988 1.50850 1.21466 0.98758 0.91652 1.05539 1.21763 0.99391 0.91132 1.06305 1.22439 0.88899 0.89881 0.71134 1.90554 1.16022 1.89878 1.35903 1.20473 0.94359 0.94503 1.06877 1.21514 0.92783 0.98729 0.94745 1.21113 1.01186 0.90217 1.02238 1.19537 0.89495 0.86633 0.99171 1.19028 0.89511 0.86478 1.04362 1.21358 1.01421 0.89551 0.95313 1.86425 1.70595 1.28809 1.37480 1.22674 0.98631 0.94070 0.86351 1.22487 0.95167 1.00186 1.04762 1.22673 0.98846 0.93903 0.86005 1.86306 1.70022 1.29468 1.37778 0.92836 0.95907 0.95916 0.92574 0.92574 0.76734 0.88393 0.88427 0.87218 0.87271 0.83413 0.83875 0.83578 0.92287 0.87594 0.88927 0.89649 0.92192 0.87507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 10 C 0.12 2.55 5.61 -4.05 -0.02 2.52 16 11 N -0.72 -12.30 5.56 -60.30 -0.33 -12.63 16 12 C 0.51 8.01 7.83 -10.98 -0.09 7.92 16 13 O -0.56 -10.54 15.98 5.56 0.09 -10.45 16 14 C -0.13 -1.55 4.99 -27.88 -0.14 -1.69 16 15 C -0.15 -1.46 3.59 -27.88 -0.10 -1.56 16 16 C 0.40 4.07 7.11 -30.82 -0.22 3.86 16 17 O -0.45 -5.74 15.97 5.54 0.09 -5.65 16 18 C -0.16 -1.48 5.87 -105.04 -0.62 -2.09 16 19 C -0.06 -0.44 9.46 -39.09 -0.37 -0.81 16 20 C -0.13 -0.97 9.98 -39.53 -0.39 -1.37 16 21 C 0.10 0.87 5.74 -39.02 -0.22 0.64 16 22 C 0.05 0.49 5.72 -39.36 -0.23 0.26 16 23 C -0.06 -0.56 9.54 -38.98 -0.37 -0.93 16 24 O -0.32 -3.03 10.16 -36.80 -0.37 -3.40 16 25 C 0.06 0.33 6.51 36.68 0.24 0.57 16 26 C -0.19 -0.82 5.93 -27.68 -0.16 -0.99 16 27 C 0.06 0.31 6.51 36.69 0.24 0.55 16 28 O -0.32 -2.79 10.15 -36.02 -0.37 -3.16 16 29 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.40 5.94 8.47 -40.82 -0.35 5.59 16 35 H 0.10 1.06 8.10 -51.93 -0.42 0.64 16 36 H 0.10 1.05 8.10 -51.93 -0.42 0.63 16 37 H 0.11 1.02 8.04 -51.93 -0.42 0.61 16 38 H 0.11 1.00 8.04 -51.93 -0.42 0.58 16 39 H 0.15 0.83 7.02 -52.49 -0.37 0.46 16 40 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.15 1.43 7.65 -52.49 -0.40 1.02 16 42 H 0.06 0.30 7.93 -51.93 -0.41 -0.11 16 43 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 45 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.27 7.93 -51.93 -0.41 -0.15 16 47 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 396.52 15.07 5.98 5.98 Total: -1.00 -34.50 396.52 -9.18 -43.68 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.96 Total: 0.89 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -3.01 Total: -6.20 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.40 Total: -37.99 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.56 Total: -22.66 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.50 -9.18 -43.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000680151049.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.862 kcal (2) G-P(sol) polarization free energy of solvation -34.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds