Wall clock time and date at job start Wed Apr 1 2020 04:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 120.00073 * 2 1 4 4 H 1.48497 * 109.47070 * 270.00415 * 3 2 1 5 5 H 1.48502 * 109.46496 * 29.99779 * 3 2 1 6 6 H 1.48500 * 109.47072 * 150.00013 * 3 2 1 7 7 C 1.37880 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47084 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47194 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00271 * 180.02562 * 11 10 9 13 13 O 1.21278 * 119.99854 * 359.97438 * 12 11 10 14 14 C 1.50703 * 120.00161 * 179.97438 * 12 11 10 15 15 C 1.53000 * 109.46912 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.46912 * 179.97438 * 15 14 12 17 17 O 1.21300 * 120.00069 * 359.97438 * 16 15 14 18 18 C 1.46863 * 120.00056 * 180.02562 * 16 15 14 19 19 C 1.40014 * 120.07536 * 0.02562 * 18 16 15 20 20 C 1.37756 * 120.04738 * 179.97438 * 19 18 16 21 21 C 1.38865 * 119.94842 * 0.02764 * 20 19 18 22 22 C 1.39118 * 120.33319 * 359.97438 * 21 20 19 23 23 C 1.37942 * 120.24412 * 359.69571 * 22 21 20 24 24 O 1.36511 * 119.58576 * 179.97438 * 22 21 20 25 25 C 1.42893 * 115.93057 * 68.28226 * 24 22 21 26 26 C 1.52062 * 110.76970 * 275.59753 * 25 24 22 27 27 C 1.52072 * 112.36244 * 64.81825 * 26 25 24 28 28 O 1.36273 * 120.12611 * 179.97438 * 21 20 19 29 29 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 31 31 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 32 32 H 1.08998 * 109.47624 * 59.99590 * 10 9 7 33 33 H 1.09002 * 109.47045 * 299.99967 * 10 9 7 34 34 H 0.97005 * 120.00266 * 359.97438 * 11 10 9 35 35 H 1.09001 * 109.46980 * 59.99654 * 14 12 11 36 36 H 1.08992 * 109.47158 * 299.99760 * 14 12 11 37 37 H 1.09002 * 109.47398 * 300.00078 * 15 14 12 38 38 H 1.09001 * 109.47194 * 60.00258 * 15 14 12 39 39 H 1.08000 * 119.97691 * 0.02562 * 19 18 16 40 40 H 1.07999 * 120.02176 * 180.02562 * 20 19 18 41 41 H 1.08001 * 120.21311 * 180.34011 * 23 22 21 42 42 H 1.08994 * 109.21832 * 35.93916 * 25 24 22 43 43 H 1.09000 * 109.21226 * 155.27201 * 25 24 22 44 44 H 1.08997 * 108.90785 * 185.55839 * 26 25 24 45 45 H 1.09000 * 108.90659 * 304.17244 * 26 25 24 46 46 H 1.09002 * 109.20998 * 55.49030 * 27 26 25 47 47 H 1.09002 * 109.20456 * 174.80365 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 7 1.5129 -4.9308 -0.0032 12 6 2.1868 -6.0980 -0.0028 13 8 3.3996 -6.0979 -0.0014 14 6 1.4333 -7.4031 -0.0040 15 6 2.4276 -8.5660 -0.0039 16 6 1.6741 -9.8711 -0.0045 17 8 0.4611 -9.8712 -0.0045 18 6 2.4084 -11.1430 -0.0039 19 6 3.8086 -11.1448 -0.0023 20 6 4.4968 -12.3381 -0.0012 21 6 3.8008 -13.5398 -0.0023 22 6 2.4096 -13.5460 -0.0040 23 6 1.7096 -12.3574 0.0018 24 8 1.7409 -14.7361 -0.0056 25 6 1.8480 -15.5146 1.1878 26 6 3.1156 -16.3542 1.1720 27 6 4.3747 -15.5016 1.1910 28 8 4.4779 -14.7224 -0.0018 29 1 -0.4850 0.8400 -0.0004 30 1 0.6248 -2.5563 -0.8920 31 1 0.6241 -2.5575 0.8880 32 1 2.8714 -3.6047 0.8890 33 1 2.8727 -3.6039 -0.8909 34 1 0.5429 -4.9308 -0.0039 35 1 0.8076 -7.4606 -0.8947 36 1 0.8057 -7.4611 0.8852 37 1 3.0549 -8.5078 -0.8934 38 1 3.0536 -8.5087 0.8866 39 1 4.3494 -10.2100 -0.0010 40 1 5.5768 -12.3391 0.0005 41 1 0.6296 -12.3628 0.0060 42 1 1.8696 -14.8482 2.0501 43 1 0.9826 -16.1728 1.2656 44 1 3.1180 -17.0068 2.0451 45 1 3.1208 -16.9691 0.2720 46 1 4.3436 -14.8352 2.0531 47 1 5.2464 -16.1510 1.2719 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000680151049.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:14 Heat of formation + Delta-G solvation = -160.327916 kcal Electronic energy + Delta-G solvation = -28616.899237 eV Core-core repulsion = 24342.974271 eV Total energy + Delta-G solvation = -4273.924966 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.04735 -41.02289 -40.26966 -38.60703 -38.26000 -36.60180 -34.79074 -34.22358 -33.74877 -31.90027 -31.62641 -30.64485 -27.77025 -27.48946 -26.12885 -24.07679 -23.72147 -22.78428 -22.61520 -21.41649 -20.69770 -19.54200 -18.69432 -18.36241 -18.11434 -17.60961 -17.09096 -16.99947 -16.58889 -16.49373 -16.45226 -16.26520 -16.05922 -15.65148 -15.20274 -15.10212 -15.03733 -14.85632 -14.47249 -14.39085 -14.17791 -13.94589 -13.80644 -13.20615 -13.09550 -12.93715 -12.90588 -12.72662 -12.50958 -12.35998 -12.23735 -12.12167 -11.85244 -11.65034 -11.45404 -11.45044 -11.08599 -10.86731 -10.76553 -10.59755 -10.04761 -9.96980 -9.66102 -8.23275 -6.33948 -0.62468 0.06868 1.17332 1.42707 1.43108 1.54577 1.69882 2.20388 2.31385 2.37215 2.45781 2.69763 3.06426 3.11581 3.58938 3.64699 3.68216 3.82571 3.98763 4.04222 4.09943 4.15277 4.17623 4.19121 4.32016 4.32955 4.41327 4.52071 4.53525 4.62517 4.68093 4.76906 4.82799 4.88135 4.88405 4.98020 5.03168 5.05735 5.12142 5.13734 5.32757 5.38138 5.51832 5.59610 5.80109 6.03699 6.17167 6.41215 6.43601 6.66142 6.79815 7.30898 7.35606 8.88488 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.036939 B = 0.001411 C = 0.001372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.825426 B =19834.102476 C =20408.130781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.020 3.980 10 C 0.140 3.860 11 N -0.722 5.722 12 C 0.508 3.492 13 O -0.585 6.585 14 C -0.125 4.125 15 C -0.145 4.145 16 C 0.410 3.590 17 O -0.480 6.480 18 C -0.172 4.172 19 C -0.050 4.050 20 C -0.128 4.128 21 C 0.091 3.909 22 C 0.038 3.962 23 C -0.070 4.070 24 O -0.341 6.341 25 C 0.047 3.953 26 C -0.184 4.184 27 C 0.051 3.949 28 O -0.338 6.338 29 H 0.265 0.735 30 H 0.007 0.993 31 H 0.008 0.992 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.410 0.590 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.170 0.830 40 H 0.165 0.835 41 H 0.136 0.864 42 H 0.063 0.937 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.239 -35.758 4.368 36.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.018 4.018 10 C 0.017 3.983 11 N -0.372 5.372 12 C 0.296 3.704 13 O -0.466 6.466 14 C -0.164 4.164 15 C -0.182 4.182 16 C 0.290 3.710 17 O -0.358 6.358 18 C -0.173 4.173 19 C -0.067 4.067 20 C -0.146 4.146 21 C 0.046 3.954 22 C -0.006 4.006 23 C -0.088 4.088 24 O -0.258 6.258 25 C -0.027 4.027 26 C -0.221 4.221 27 C -0.023 4.023 28 O -0.255 6.255 29 H 0.074 0.926 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.245 0.755 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.188 0.812 40 H 0.183 0.817 41 H 0.154 0.846 42 H 0.081 0.919 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.093 0.907 46 H 0.085 0.915 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.309 -35.809 4.100 36.776 hybrid contribution -0.480 0.960 0.131 1.081 sum 6.829 -34.849 4.231 35.763 Atomic orbital electron populations 1.70061 1.07592 1.27968 1.51050 1.25882 0.95772 1.03138 0.94420 0.85442 0.78648 0.78431 0.78504 1.19799 1.20607 1.18942 1.21487 0.93628 0.91936 1.51483 0.92184 1.19159 0.94341 0.91994 0.96290 1.21202 0.94945 0.82303 0.99878 1.46220 1.11202 1.05829 1.73990 1.21173 0.87942 0.86281 0.74990 1.90646 1.15510 1.88435 1.51973 1.21439 0.98853 0.89477 1.06651 1.21777 0.99054 0.90037 1.07363 1.22507 0.88379 0.90304 0.69857 1.90551 1.17255 1.90200 1.37757 1.20422 0.95112 0.93682 1.08057 1.21735 0.91979 0.99701 0.93332 1.21374 1.02256 0.89584 1.01368 1.19741 0.89337 0.87420 0.98881 1.19151 0.90025 0.86509 1.04902 1.21347 1.01110 0.90149 0.96226 1.86373 1.71012 1.29084 1.39349 1.22967 1.00220 0.94204 0.85288 1.22477 0.94093 0.99950 1.05610 1.22980 1.00147 0.94086 0.85062 1.86269 1.69980 1.29649 1.39574 0.92593 0.97440 0.97398 0.93404 0.93453 0.75451 0.87332 0.87194 0.86284 0.86085 0.81225 0.81703 0.84575 0.91874 0.86046 0.85939 0.90682 0.91458 0.85349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.46 13.29 21.45 0.28 -54.18 16 2 C 0.01 0.37 5.46 84.66 0.46 0.83 16 3 Si 0.97 43.45 29.54 68.60 2.03 45.47 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.55 -30.45 9.11 25.60 0.23 -30.22 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.02 0.99 5.09 29.85 0.15 1.14 16 10 C 0.14 5.92 5.61 86.38 0.48 6.41 16 11 N -0.72 -24.18 5.56 -463.07 -2.57 -26.75 16 12 C 0.51 15.48 7.83 87.66 0.69 16.17 16 13 O -0.58 -21.46 15.98 -3.02 -0.05 -21.51 16 14 C -0.12 -2.67 4.99 29.85 0.15 -2.52 16 15 C -0.14 -2.58 3.59 29.85 0.11 -2.47 16 16 C 0.41 7.96 7.11 27.95 0.20 8.16 16 17 O -0.48 -12.13 15.97 -3.09 -0.05 -12.18 16 18 C -0.17 -3.01 5.87 -20.13 -0.12 -3.13 16 19 C -0.05 -0.65 9.46 22.59 0.21 -0.43 16 20 C -0.13 -1.69 9.98 22.31 0.22 -1.47 16 21 C 0.09 1.56 5.74 22.63 0.13 1.69 16 22 C 0.04 0.74 5.72 22.41 0.13 0.87 16 23 C -0.07 -1.37 9.54 22.66 0.22 -1.16 16 24 O -0.34 -6.62 10.16 -84.72 -0.86 -7.48 16 25 C 0.05 0.51 6.51 71.67 0.47 0.98 16 26 C -0.18 -1.33 5.93 29.98 0.18 -1.16 16 27 C 0.05 0.44 6.51 71.68 0.47 0.91 16 28 O -0.34 -5.54 10.15 -81.94 -0.83 -6.37 16 29 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 30 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.41 11.97 8.47 -92.70 -0.79 11.19 16 35 H 0.11 2.16 8.10 -2.39 -0.02 2.15 16 36 H 0.11 2.15 8.10 -2.39 -0.02 2.13 16 37 H 0.12 1.95 8.04 -2.39 -0.02 1.93 16 38 H 0.12 1.91 8.04 -2.39 -0.02 1.89 16 39 H 0.17 1.41 7.02 -2.91 -0.02 1.39 16 40 H 0.17 1.41 8.06 -2.91 -0.02 1.38 16 41 H 0.14 2.84 7.65 -2.91 -0.02 2.82 16 42 H 0.06 0.61 7.93 -2.39 -0.02 0.59 16 43 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 45 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.07 0.48 7.93 -2.39 -0.02 0.46 16 47 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -74.48 396.52 2.53 -71.95 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.21 Total: 16.45 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 4.38 Total: -5.42 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -2.29 Total: -80.93 kcal Atomic # 8 Polarization: -45.74 SS G_CDS: -1.79 Total: -47.53 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -74.48 2.53 -71.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000680151049.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.374 kcal (2) G-P(sol) polarization free energy of solvation -74.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds