Wall clock time and date at job start Wed Apr 1 2020 04:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00266 * 2 1 4 4 H 1.48501 * 109.46971 * 240.00115 * 3 2 1 5 5 H 1.48499 * 109.47154 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47229 * 120.00245 * 3 2 1 7 7 C 1.37877 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99939 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99911 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47084 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00383 * 270.00186 * 10 9 7 12 12 O 1.21290 * 119.99693 * 4.43639 * 11 10 9 13 13 C 1.50700 * 120.00521 * 184.43991 * 11 10 9 14 14 O 1.45200 * 109.47481 * 174.72793 * 13 11 10 15 15 C 1.34222 * 117.00330 * 179.97438 * 14 13 11 16 16 O 1.20828 * 119.99738 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.00203 * 180.02562 * 15 14 13 18 18 H 1.09004 * 109.52360 * 59.88161 * 17 15 14 19 19 C 1.53178 * 109.52381 * 180.02562 * 17 15 14 20 20 C 1.53179 * 109.03815 * 176.88892 * 19 17 15 21 21 C 1.53087 * 109.16067 * 303.02033 * 20 19 17 22 22 O 1.42896 * 109.41832 * 57.61039 * 21 20 19 23 23 C 1.42904 * 114.09690 * 298.84153 * 22 21 20 24 24 C 1.39928 * 120.00110 * 89.99999 * 10 9 7 25 25 C 1.38872 * 120.07144 * 66.72100 * 24 10 9 26 26 C 1.38112 * 119.93056 * 179.97438 * 25 24 10 27 27 C 1.38275 * 120.07034 * 0.02562 * 26 25 24 28 28 C 1.38287 * 120.14231 * 0.02685 * 27 26 25 29 29 C 1.38112 * 120.06897 * 359.95156 * 28 27 26 30 30 H 0.97005 * 119.99686 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47189 * 60.00197 * 9 7 2 32 32 H 1.09000 * 109.47277 * 299.99807 * 9 7 2 33 33 H 1.09001 * 109.47062 * 294.73254 * 13 11 10 34 34 H 1.09001 * 109.47156 * 54.72727 * 13 11 10 35 35 H 1.09007 * 109.54593 * 296.75716 * 19 17 15 36 36 H 1.08997 * 109.54749 * 56.92977 * 19 17 15 37 37 H 1.09000 * 109.52026 * 62.92582 * 20 19 17 38 38 H 1.09003 * 109.52002 * 183.11670 * 20 19 17 39 39 H 1.09003 * 109.48113 * 177.59593 * 21 20 19 40 40 H 1.09008 * 109.48186 * 297.62151 * 21 20 19 41 41 H 1.09004 * 109.48370 * 301.17367 * 23 22 21 42 42 H 1.08996 * 109.48569 * 181.13934 * 23 22 21 43 43 H 1.08007 * 120.03311 * 0.02562 * 25 24 10 44 44 H 1.08001 * 119.96118 * 180.29563 * 26 25 24 45 45 H 1.08002 * 119.92665 * 179.97438 * 27 26 25 46 46 H 1.07996 * 119.96022 * 179.97438 * 28 27 26 47 47 H 1.08003 * 120.03165 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6127 -0.0018 11 6 2.6398 -4.1244 -1.1695 12 8 2.3085 -3.6123 -2.2178 13 6 3.5401 -5.3330 -1.1727 14 8 3.7687 -5.7627 -2.5407 15 6 4.5562 -6.8348 -2.7192 16 8 5.0383 -7.3960 -1.7639 17 6 4.8392 -7.3386 -4.1110 18 1 5.3256 -6.5539 -4.6905 19 6 5.7564 -8.5631 -4.0355 20 6 5.9738 -9.1124 -5.4488 21 6 4.6158 -9.4413 -6.0744 22 8 3.8012 -8.2674 -6.0859 23 6 3.5251 -7.7361 -4.7883 24 6 2.6584 -4.1451 1.2094 25 6 1.7787 -4.8146 2.0499 26 6 2.2316 -5.3394 3.2445 27 6 3.5593 -5.1982 3.6042 28 6 4.4376 -4.5311 2.7700 29 6 3.9910 -4.0044 1.5739 30 1 -0.4850 0.8401 0.0004 31 1 0.6239 -2.5567 -0.8903 32 1 0.6246 -2.5571 0.8897 33 1 4.4925 -5.0778 -0.7080 34 1 3.0672 -6.1398 -0.6127 35 1 6.7154 -8.2744 -3.6050 36 1 5.2929 -9.3282 -3.4128 37 1 6.4830 -8.3641 -6.0561 38 1 6.5804 -10.0166 -5.3988 39 1 4.7617 -9.7926 -7.0959 40 1 4.1248 -10.2189 -5.4892 41 1 3.0198 -8.4912 -4.1862 42 1 2.8853 -6.8588 -4.8832 43 1 0.7416 -4.9256 1.7693 44 1 1.5490 -5.8643 3.8963 45 1 3.9109 -5.6091 4.5391 46 1 5.4738 -4.4222 3.0540 47 1 4.6776 -3.4839 0.9226 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727906173.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:51 Heat of formation + Delta-G solvation = -137.533908 kcal Electronic energy + Delta-G solvation = -30558.629921 eV Core-core repulsion = 26285.693377 eV Total energy + Delta-G solvation = -4272.936543 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.99186 -39.97725 -39.17366 -38.14475 -36.50293 -34.92125 -34.00855 -32.77170 -31.93236 -30.80187 -29.57308 -29.07666 -26.76325 -25.43568 -24.82772 -23.09138 -22.58752 -22.14884 -21.61715 -20.23596 -19.25437 -17.95789 -17.48948 -17.04211 -16.71617 -16.53190 -16.12185 -16.01695 -15.80035 -15.37513 -15.18807 -14.86055 -14.50209 -14.28112 -14.13592 -13.95066 -13.61857 -13.22655 -13.16742 -12.96355 -12.83396 -12.52627 -12.36492 -12.20605 -11.94837 -11.54145 -11.53473 -11.33197 -11.27348 -11.12794 -10.90850 -10.83411 -10.72927 -10.67555 -10.55074 -10.22176 -9.88097 -9.82405 -9.45309 -8.75779 -8.68331 -8.48289 -7.78973 -6.10465 -4.15169 1.47456 1.57660 2.01604 2.30835 3.05192 3.30310 3.34132 3.37362 3.48672 3.72083 3.95056 4.20198 4.40340 4.40487 4.46362 4.53664 4.70595 4.74706 4.86596 5.01557 5.08793 5.11952 5.17486 5.22619 5.24986 5.26203 5.29518 5.34186 5.42796 5.45209 5.58352 5.60880 5.73156 5.74878 5.86898 5.93903 6.18855 6.27269 6.53272 6.66720 6.69768 6.80368 6.86787 7.11759 7.24338 7.35017 7.58235 7.84220 8.11320 8.16232 8.68543 8.88219 9.49354 10.97996 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.010631 B = 0.002936 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.210638 B = 9533.064104 C =11242.338670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.064 3.936 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.251 3.749 10 N -0.555 5.555 11 C 0.514 3.486 12 O -0.501 6.501 13 C 0.050 3.950 14 O -0.328 6.328 15 C 0.467 3.533 16 O -0.505 6.505 17 C -0.115 4.115 18 H 0.121 0.879 19 C -0.107 4.107 20 C -0.155 4.155 21 C 0.053 3.947 22 O -0.372 6.372 23 C 0.071 3.929 24 C 0.154 3.846 25 C -0.123 4.123 26 C -0.108 4.108 27 C -0.132 4.132 28 C -0.107 4.107 29 C -0.127 4.127 30 H 0.265 0.735 31 H 0.049 0.951 32 H 0.039 0.961 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.053 0.947 41 H 0.058 0.942 42 H 0.115 0.885 43 H 0.126 0.874 44 H 0.123 0.877 45 H 0.120 0.880 46 H 0.122 0.878 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.034 -19.612 -2.441 22.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.076 0.924 9 C 0.134 3.866 10 N -0.285 5.285 11 C 0.299 3.701 12 O -0.375 6.375 13 C -0.027 4.027 14 O -0.242 6.242 15 C 0.309 3.691 16 O -0.393 6.393 17 C -0.134 4.134 18 H 0.139 0.861 19 C -0.145 4.145 20 C -0.193 4.193 21 C -0.023 4.023 22 O -0.290 6.290 23 C -0.006 4.006 24 C 0.062 3.938 25 C -0.142 4.142 26 C -0.127 4.127 27 C -0.150 4.150 28 C -0.126 4.126 29 C -0.147 4.147 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.133 0.867 43 H 0.144 0.856 44 H 0.141 0.859 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.698 -19.231 -2.932 21.736 hybrid contribution 0.695 1.004 0.688 1.401 sum 10.393 -18.227 -2.244 21.102 Atomic orbital electron populations 1.69912 1.05984 1.27316 1.50040 1.24902 0.94907 0.99222 0.94850 0.86527 0.79545 0.82514 0.78703 1.20055 1.21079 1.20198 1.21302 0.93370 0.90361 1.51649 0.92374 1.19493 0.86844 0.81350 0.98940 1.45895 1.45896 1.34805 1.01899 1.19734 0.81585 0.84290 0.84449 1.90745 1.55854 1.60468 1.30395 1.22928 1.01436 0.97378 0.80967 1.86549 1.62489 1.44280 1.30927 1.23530 0.75490 0.77851 0.92215 1.90669 1.48791 1.56905 1.42942 1.21761 1.00410 1.00352 0.90915 0.86147 1.21522 0.99920 0.95793 0.97264 1.22222 0.98485 1.02346 0.96206 1.22680 0.90220 0.87494 1.01936 1.88021 1.70159 1.43583 1.27267 1.22560 0.93598 1.00057 0.84393 1.17793 0.92598 0.95102 0.88323 1.21315 1.00094 0.97809 0.95029 1.20987 0.95791 0.99808 0.96112 1.21091 0.93722 1.00483 0.99704 1.20981 0.99650 0.97975 0.93985 1.21375 0.95616 1.00152 0.97524 0.92523 0.93313 0.94300 0.88343 0.88618 0.90322 0.90609 0.90570 0.90132 0.88498 0.92899 0.92390 0.86728 0.85574 0.85931 0.86236 0.85988 0.85898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.25 6.46 5.07 -5.19 -0.03 6.43 16 10 N -0.56 -11.81 2.51 -114.74 -0.29 -12.10 16 11 C 0.51 10.78 7.62 -10.99 -0.08 10.70 16 12 O -0.50 -12.53 16.13 -14.05 -0.23 -12.75 16 13 C 0.05 0.83 4.61 36.01 0.17 1.00 16 14 O -0.33 -5.29 9.69 -45.87 -0.44 -5.73 16 15 C 0.47 6.37 7.26 36.00 0.26 6.63 16 16 O -0.51 -7.68 15.71 -18.75 -0.29 -7.97 16 17 C -0.11 -1.20 2.83 -91.64 -0.26 -1.46 16 18 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 19 C -0.11 -0.93 4.62 -26.55 -0.12 -1.05 16 20 C -0.15 -1.03 6.14 -26.59 -0.16 -1.20 16 21 C 0.05 0.39 6.84 37.20 0.25 0.64 16 22 O -0.37 -3.86 10.77 -35.23 -0.38 -4.24 16 23 C 0.07 0.73 6.06 37.20 0.23 0.95 16 24 C 0.15 2.75 4.43 -83.69 -0.37 2.38 16 25 C -0.12 -1.92 9.64 -39.39 -0.38 -2.30 16 26 C -0.11 -1.40 10.04 -39.61 -0.40 -1.80 16 27 C -0.13 -1.61 10.04 -39.55 -0.40 -2.01 16 28 C -0.11 -1.42 10.04 -39.61 -0.40 -1.82 16 29 C -0.13 -2.03 8.44 -39.39 -0.33 -2.37 16 30 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.05 1.39 7.49 -51.93 -0.39 1.00 16 32 H 0.04 1.02 7.83 -51.93 -0.41 0.61 16 33 H 0.10 1.52 6.97 -51.93 -0.36 1.15 16 34 H 0.10 1.44 8.02 -51.93 -0.42 1.02 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.68 8.02 -51.93 -0.42 0.26 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.35 8.14 -51.92 -0.42 -0.08 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.13 1.91 8.06 -52.48 -0.42 1.49 16 44 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 45 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 46 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 47 H 0.12 1.96 7.91 -52.48 -0.41 1.55 16 LS Contribution 397.21 15.07 5.99 5.99 Total: -1.00 -33.84 397.21 -9.40 -43.24 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -7.02 Total: 1.01 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -2.44 Total: 1.26 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.45 Total: -37.61 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -1.35 Total: -30.69 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.84 -9.40 -43.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727906173.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.298 kcal (2) G-P(sol) polarization free energy of solvation -33.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds