Wall clock time and date at job start Wed Apr 1 2020 04:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00266 * 2 1 4 4 H 1.48501 * 109.46971 * 240.00115 * 3 2 1 5 5 H 1.48499 * 109.47154 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47229 * 120.00245 * 3 2 1 7 7 C 1.37877 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99939 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99911 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47084 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00383 * 270.00186 * 10 9 7 12 12 O 1.21290 * 119.99693 * 4.43639 * 11 10 9 13 13 C 1.50700 * 120.00521 * 184.43991 * 11 10 9 14 14 O 1.45200 * 109.47481 * 174.72793 * 13 11 10 15 15 C 1.34222 * 117.00330 * 179.97438 * 14 13 11 16 16 O 1.20828 * 119.99738 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.00203 * 180.02562 * 15 14 13 18 18 H 1.09004 * 109.52360 * 59.88161 * 17 15 14 19 19 C 1.53178 * 109.52381 * 180.02562 * 17 15 14 20 20 C 1.53179 * 109.03815 * 176.88892 * 19 17 15 21 21 C 1.53087 * 109.16067 * 303.02033 * 20 19 17 22 22 O 1.42896 * 109.41832 * 57.61039 * 21 20 19 23 23 C 1.42904 * 114.09690 * 298.84153 * 22 21 20 24 24 C 1.39928 * 120.00110 * 89.99999 * 10 9 7 25 25 C 1.38872 * 120.07144 * 66.72100 * 24 10 9 26 26 C 1.38112 * 119.93056 * 179.97438 * 25 24 10 27 27 C 1.38275 * 120.07034 * 0.02562 * 26 25 24 28 28 C 1.38287 * 120.14231 * 0.02685 * 27 26 25 29 29 C 1.38112 * 120.06897 * 359.95156 * 28 27 26 30 30 H 0.97005 * 119.99686 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47189 * 60.00197 * 9 7 2 32 32 H 1.09000 * 109.47277 * 299.99807 * 9 7 2 33 33 H 1.09001 * 109.47062 * 294.73254 * 13 11 10 34 34 H 1.09001 * 109.47156 * 54.72727 * 13 11 10 35 35 H 1.09007 * 109.54593 * 296.75716 * 19 17 15 36 36 H 1.08997 * 109.54749 * 56.92977 * 19 17 15 37 37 H 1.09000 * 109.52026 * 62.92582 * 20 19 17 38 38 H 1.09003 * 109.52002 * 183.11670 * 20 19 17 39 39 H 1.09003 * 109.48113 * 177.59593 * 21 20 19 40 40 H 1.09008 * 109.48186 * 297.62151 * 21 20 19 41 41 H 1.09004 * 109.48370 * 301.17367 * 23 22 21 42 42 H 1.08996 * 109.48569 * 181.13934 * 23 22 21 43 43 H 1.08007 * 120.03311 * 0.02562 * 25 24 10 44 44 H 1.08001 * 119.96118 * 180.29563 * 26 25 24 45 45 H 1.08002 * 119.92665 * 179.97438 * 27 26 25 46 46 H 1.07996 * 119.96022 * 179.97438 * 28 27 26 47 47 H 1.08003 * 120.03165 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6127 -0.0018 11 6 2.6398 -4.1244 -1.1695 12 8 2.3085 -3.6123 -2.2178 13 6 3.5401 -5.3330 -1.1727 14 8 3.7687 -5.7627 -2.5407 15 6 4.5562 -6.8348 -2.7192 16 8 5.0383 -7.3960 -1.7639 17 6 4.8392 -7.3386 -4.1110 18 1 5.3256 -6.5539 -4.6905 19 6 5.7564 -8.5631 -4.0355 20 6 5.9738 -9.1124 -5.4488 21 6 4.6158 -9.4413 -6.0744 22 8 3.8012 -8.2674 -6.0859 23 6 3.5251 -7.7361 -4.7883 24 6 2.6584 -4.1451 1.2094 25 6 1.7787 -4.8146 2.0499 26 6 2.2316 -5.3394 3.2445 27 6 3.5593 -5.1982 3.6042 28 6 4.4376 -4.5311 2.7700 29 6 3.9910 -4.0044 1.5739 30 1 -0.4850 0.8401 0.0004 31 1 0.6239 -2.5567 -0.8903 32 1 0.6246 -2.5571 0.8897 33 1 4.4925 -5.0778 -0.7080 34 1 3.0672 -6.1398 -0.6127 35 1 6.7154 -8.2744 -3.6050 36 1 5.2929 -9.3282 -3.4128 37 1 6.4830 -8.3641 -6.0561 38 1 6.5804 -10.0166 -5.3988 39 1 4.7617 -9.7926 -7.0959 40 1 4.1248 -10.2189 -5.4892 41 1 3.0198 -8.4912 -4.1862 42 1 2.8853 -6.8588 -4.8832 43 1 0.7416 -4.9256 1.7693 44 1 1.5490 -5.8643 3.8963 45 1 3.9109 -5.6091 4.5391 46 1 5.4738 -4.4222 3.0540 47 1 4.6776 -3.4839 0.9226 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727906173.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:50 Heat of formation + Delta-G solvation = -156.435337 kcal Electronic energy + Delta-G solvation = -30559.449548 eV Core-core repulsion = 26285.693377 eV Total energy + Delta-G solvation = -4273.756171 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.15945 -41.35942 -40.04790 -39.50517 -37.74416 -36.58229 -34.85851 -34.77493 -32.68042 -31.94714 -31.14640 -30.40885 -28.54671 -26.20422 -25.76229 -24.88595 -23.86008 -23.37743 -22.57332 -21.09568 -20.71282 -19.12322 -18.88180 -18.66888 -18.09596 -17.73639 -17.32534 -17.11854 -17.02444 -16.69400 -16.43361 -16.10188 -15.81916 -15.53642 -15.26182 -14.96290 -14.70748 -14.53722 -14.33458 -14.29552 -13.93177 -13.86947 -13.63962 -13.52218 -13.41490 -13.08917 -12.71528 -12.67579 -12.48157 -12.24655 -12.20086 -12.15264 -12.04116 -11.97938 -11.78751 -11.78077 -11.35806 -11.11200 -10.68811 -10.59719 -10.22423 -9.87291 -9.31937 -8.27606 -6.41999 0.28809 0.46005 0.91029 1.08617 1.33561 1.38250 1.41505 1.47422 2.16992 2.36864 2.80095 2.84012 3.02878 3.27113 3.38031 3.59542 3.60515 3.83919 3.85058 3.92420 4.03955 4.06034 4.08166 4.12727 4.28964 4.42224 4.53562 4.55877 4.59906 4.67093 4.69846 4.74565 4.84709 4.95138 4.98784 5.04267 5.05983 5.11279 5.15632 5.27469 5.33268 5.49597 5.58865 5.61218 5.69066 5.95980 6.01163 6.11843 6.40291 6.54003 6.63751 7.05782 7.28474 8.79914 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.010631 B = 0.002936 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.210638 B = 9533.064104 C =11242.338670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.012 3.988 3 Si 0.967 3.033 4 H -0.276 1.276 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.052 0.948 9 C 0.268 3.732 10 N -0.554 5.554 11 C 0.508 3.492 12 O -0.556 6.556 13 C 0.067 3.933 14 O -0.345 6.345 15 C 0.469 3.531 16 O -0.519 6.519 17 C -0.110 4.110 18 H 0.127 0.873 19 C -0.105 4.105 20 C -0.147 4.147 21 C 0.045 3.955 22 O -0.389 6.389 23 C 0.074 3.926 24 C 0.114 3.886 25 C -0.137 4.137 26 C -0.102 4.102 27 C -0.117 4.117 28 C -0.103 4.103 29 C -0.140 4.140 30 H 0.269 0.731 31 H 0.008 0.992 32 H 0.029 0.971 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.115 0.885 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.100 0.900 43 H 0.119 0.881 44 H 0.155 0.845 45 H 0.161 0.839 46 H 0.153 0.847 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.405 -21.209 -0.735 24.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.791 3.209 4 H -0.201 1.201 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.070 0.930 9 C 0.149 3.851 10 N -0.283 5.283 11 C 0.296 3.704 12 O -0.434 6.434 13 C -0.009 4.009 14 O -0.261 6.261 15 C 0.313 3.687 16 O -0.407 6.407 17 C -0.130 4.130 18 H 0.145 0.855 19 C -0.142 4.142 20 C -0.185 4.185 21 C -0.031 4.031 22 O -0.308 6.308 23 C -0.003 4.003 24 C 0.024 3.976 25 C -0.156 4.156 26 C -0.121 4.121 27 C -0.135 4.135 28 C -0.121 4.121 29 C -0.160 4.160 30 H 0.078 0.922 31 H 0.027 0.973 32 H 0.047 0.953 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.122 0.878 39 H 0.133 0.867 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.118 0.882 43 H 0.137 0.863 44 H 0.173 0.827 45 H 0.178 0.822 46 H 0.171 0.829 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 12.095 -20.871 -1.187 24.151 hybrid contribution -0.037 1.388 0.229 1.407 sum 12.058 -19.483 -0.957 22.933 Atomic orbital electron populations 1.70026 1.07445 1.28416 1.50545 1.25809 0.95838 1.02901 0.94208 0.85480 0.78403 0.78073 0.78977 1.20134 1.19995 1.18711 1.21558 0.93196 0.91707 1.51895 0.93017 1.18918 0.87212 0.82684 0.96331 1.45675 1.44984 1.33817 1.03798 1.20494 0.81353 0.85046 0.83527 1.90701 1.58136 1.62360 1.32160 1.22668 1.00890 0.95622 0.81758 1.86572 1.63421 1.45534 1.30561 1.24161 0.74428 0.76765 0.93355 1.90650 1.49260 1.57104 1.43704 1.21891 1.01014 1.01325 0.88726 0.85527 1.21555 0.99240 0.94705 0.98713 1.22205 0.98424 1.03294 0.94566 1.22949 0.90166 0.86596 1.03410 1.88002 1.70944 1.44875 1.26986 1.22452 0.93331 0.99816 0.84744 1.18063 0.94101 0.97667 0.87765 1.21419 0.99623 0.98499 0.96088 1.21375 0.96997 0.98719 0.94960 1.21598 0.92918 0.98471 1.00528 1.21360 1.01448 0.96771 0.92540 1.21421 0.94592 1.01048 0.98911 0.92194 0.97349 0.95336 0.86966 0.86922 0.90267 0.90849 0.90409 0.87800 0.86663 0.92076 0.91790 0.88226 0.86297 0.82694 0.82150 0.82901 0.86790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.06 13.29 21.45 0.28 -55.77 16 2 C 0.01 0.70 5.46 84.65 0.46 1.16 16 3 Si 0.97 45.40 29.54 68.60 2.03 47.43 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.55 -32.02 9.39 25.60 0.24 -31.78 16 8 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 9 C 0.27 14.74 5.07 85.64 0.43 15.18 16 10 N -0.55 -25.00 2.51 -635.31 -1.59 -26.60 16 11 C 0.51 22.65 7.62 87.66 0.67 23.32 16 12 O -0.56 -29.90 16.13 15.68 0.25 -29.65 16 13 C 0.07 2.30 4.61 71.24 0.33 2.63 16 14 O -0.35 -11.50 9.69 -45.00 -0.44 -11.94 16 15 C 0.47 12.78 7.26 71.23 0.52 13.30 16 16 O -0.52 -15.37 15.71 21.96 0.35 -15.03 16 17 C -0.11 -2.25 2.83 -11.45 -0.03 -2.28 16 18 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 19 C -0.10 -1.65 4.62 30.71 0.14 -1.50 16 20 C -0.15 -1.63 6.14 30.68 0.19 -1.44 16 21 C 0.04 0.57 6.84 72.01 0.49 1.06 16 22 O -0.39 -7.80 10.77 -148.98 -1.60 -9.40 16 23 C 0.07 1.52 6.06 72.01 0.44 1.96 16 24 C 0.11 4.17 4.43 38.15 0.17 4.34 16 25 C -0.14 -4.26 9.64 22.39 0.22 -4.05 16 26 C -0.10 -2.35 10.04 22.25 0.22 -2.12 16 27 C -0.12 -2.36 10.04 22.29 0.22 -2.14 16 28 C -0.10 -2.40 10.04 22.25 0.22 -2.18 16 29 C -0.14 -4.41 8.44 22.39 0.19 -4.22 16 30 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 31 H 0.01 0.52 7.49 -2.39 -0.02 0.51 16 32 H 0.03 1.60 7.83 -2.39 -0.02 1.58 16 33 H 0.11 3.49 6.97 -2.39 -0.02 3.47 16 34 H 0.11 3.42 8.02 -2.39 -0.02 3.40 16 35 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.07 1.20 8.02 -2.39 -0.02 1.18 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 41 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 42 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.12 3.75 8.06 -2.91 -0.02 3.73 16 44 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 45 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 46 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 47 H 0.11 3.69 7.91 -2.91 -0.02 3.66 16 Total: -1.00 -77.46 397.21 5.36 -72.10 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.96 Total: 17.62 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: 5.12 Total: 11.24 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -1.31 Total: -82.37 kcal Atomic # 8 Polarization: -64.57 SS G_CDS: -1.44 Total: -66.02 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -77.46 5.36 -72.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727906173.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.339 kcal (2) G-P(sol) polarization free energy of solvation -77.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds