Wall clock time and date at job start Wed Apr 1 2020 04:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86794 * 119.99630 * 2 1 4 4 H 1.48498 * 109.46899 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47217 * 299.99927 * 3 2 1 6 6 H 1.48504 * 109.47264 * 60.00040 * 3 2 1 7 7 C 1.38646 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99936 * 179.97438 * 7 2 1 9 9 O 1.34830 * 120.00697 * 0.02562 * 7 2 1 10 10 C 1.35746 * 117.00475 * 185.05861 * 9 7 2 11 11 C 1.38882 * 120.06651 * 354.45879 * 10 9 7 12 12 C 1.38102 * 119.92931 * 180.02562 * 11 10 9 13 13 C 1.38295 * 120.07207 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.93340 * 179.97438 * 13 12 11 15 15 O 1.45189 * 109.47217 * 89.99542 * 14 13 12 16 16 C 1.34238 * 116.99979 * 180.02562 * 15 14 13 17 17 O 1.20823 * 119.99816 * 359.97438 * 16 15 14 18 18 C 1.50696 * 119.99981 * 180.02562 * 16 15 14 19 19 N 1.46508 * 109.46964 * 179.97438 * 18 16 15 20 20 C 1.47182 * 119.78517 * 269.72433 * 19 18 16 21 21 C 1.53498 * 108.37873 * 108.06181 * 20 19 18 22 22 C 1.51779 * 110.82083 * 86.59088 * 21 20 19 23 23 C 1.51789 * 113.80977 * 292.92475 * 22 21 20 24 24 C 1.53063 * 110.74256 * 66.80874 * 23 22 21 25 25 C 1.33376 * 119.78241 * 89.99622 * 19 18 16 26 26 O 1.21277 * 119.89260 * 0.28471 * 25 19 18 27 27 C 1.38304 * 120.13769 * 0.24507 * 13 12 11 28 28 C 1.38107 * 120.06580 * 359.46117 * 27 13 12 29 29 H 0.96995 * 120.00346 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.03384 * 0.02562 * 11 10 9 31 31 H 1.08003 * 119.96596 * 179.97438 * 12 11 10 32 32 H 1.09000 * 109.46792 * 329.99283 * 14 13 12 33 33 H 1.09000 * 109.46787 * 209.99556 * 14 13 12 34 34 H 1.08996 * 109.47902 * 59.99834 * 18 16 15 35 35 H 1.09010 * 109.46920 * 299.99356 * 18 16 15 36 36 H 1.09001 * 109.60593 * 227.79701 * 20 19 18 37 37 H 1.09006 * 109.60798 * 348.28693 * 20 19 18 38 38 H 1.09001 * 109.28473 * 326.21052 * 21 20 19 39 39 H 1.08998 * 109.13260 * 206.87014 * 21 20 19 40 40 H 1.09003 * 108.61364 * 171.81166 * 22 21 20 41 41 H 1.08997 * 108.61823 * 54.04248 * 22 21 20 42 42 H 1.09006 * 109.22451 * 306.48826 * 23 22 21 43 43 H 1.08996 * 109.22854 * 187.13345 * 23 22 21 44 44 H 1.09004 * 109.63067 * 155.38151 * 24 23 22 45 45 H 1.08999 * 109.79643 * 34.88654 * 24 23 22 46 46 H 1.07995 * 119.96757 * 179.70427 * 27 13 12 47 47 H 1.08007 * 120.03224 * 180.26959 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 0.0006 5 1 1.8907 2.3964 -1.2125 6 1 1.8907 2.3965 1.2125 7 6 2.0088 -1.2007 0.0005 8 1 3.0889 -1.2008 0.0001 9 8 1.3348 -2.3685 0.0005 10 6 2.0700 -3.5045 0.1077 11 6 3.4572 -3.4394 0.0952 12 6 4.2024 -4.5970 0.2039 13 6 3.5687 -5.8203 0.3246 14 6 4.3849 -7.0816 0.4424 15 8 4.6533 -7.3554 1.8428 16 6 5.3754 -8.4521 2.1218 17 8 5.7696 -9.1600 1.2256 18 6 5.6932 -8.8009 3.5530 19 7 6.4854 -10.0328 3.5910 20 6 5.8072 -11.3355 3.6868 21 6 5.9340 -12.0479 2.3330 22 6 7.2318 -12.8310 2.2549 23 6 8.4739 -11.9586 2.2385 24 6 8.6447 -11.2334 3.5756 25 6 7.8167 -9.9660 3.5440 26 8 8.3657 -8.8868 3.4753 27 6 2.1874 -5.8891 0.3318 28 6 1.4366 -4.7344 0.2295 29 1 -0.4850 0.8400 -0.0004 30 1 3.9527 -2.4844 0.0005 31 1 5.2812 -4.5471 0.1938 32 1 5.3275 -6.9555 -0.0903 33 1 3.8312 -7.9145 0.0090 34 1 4.7655 -8.9489 4.1057 35 1 6.2613 -7.9890 4.0073 36 1 6.2782 -11.9367 4.4645 37 1 4.7547 -11.1833 3.9260 38 1 5.9135 -11.3075 1.5333 39 1 5.0946 -12.7321 2.2094 40 1 7.2193 -13.4356 1.3480 41 1 7.2873 -13.4992 3.1143 42 1 8.3847 -11.2222 1.4398 43 1 9.3484 -12.5826 2.0545 44 1 9.6947 -10.9813 3.7239 45 1 8.3035 -11.8737 4.3891 46 1 1.6954 -6.8463 0.4213 47 1 0.3579 -4.7884 0.2395 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733381783.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:33 Heat of formation + Delta-G solvation = -125.286526 kcal Electronic energy + Delta-G solvation = -29656.094831 eV Core-core repulsion = 25383.689373 eV Total energy + Delta-G solvation = -4272.405457 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.11210 -39.96248 -39.05221 -37.12744 -36.92535 -36.03139 -34.99861 -32.44623 -31.44098 -30.77643 -30.25533 -29.41813 -26.61784 -25.86535 -24.82239 -24.24153 -22.06452 -21.53447 -20.97742 -20.58671 -19.17702 -18.08934 -17.87513 -17.62961 -17.36494 -17.00487 -16.25739 -16.08768 -15.40366 -14.77210 -14.67866 -14.56645 -14.43219 -14.19079 -13.98340 -13.81588 -13.72188 -13.60457 -13.41153 -12.93872 -12.80776 -12.72300 -12.61125 -12.41002 -12.21194 -11.81027 -11.72288 -11.42199 -11.23178 -11.20872 -11.04684 -11.01970 -10.81298 -10.71429 -10.50395 -10.45650 -10.43150 -10.02936 -9.41011 -9.20841 -8.90863 -8.27149 -7.33466 -6.52775 -4.11287 1.85077 2.14966 2.17505 2.28961 2.50976 3.05887 3.10749 3.16261 3.17113 3.91231 4.06270 4.31310 4.35855 4.42099 4.45065 4.72098 4.76035 4.86460 4.90835 4.97254 5.00812 5.03370 5.12973 5.15740 5.19226 5.25272 5.27417 5.35376 5.50433 5.58337 5.59688 5.66115 5.69579 5.76091 5.80471 5.94351 6.03550 6.12872 6.32991 6.55349 6.59383 6.80581 6.95995 6.97019 7.14652 7.27304 7.35488 7.70970 7.75105 7.86511 7.92329 8.92710 9.60428 10.64745 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.024978 B = 0.001795 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.720862 B =15590.812496 C =16153.839562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.943 3.057 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.095 0.905 9 O -0.172 6.172 10 C 0.163 3.837 11 C -0.237 4.237 12 C -0.044 4.044 13 C -0.205 4.205 14 C 0.132 3.868 15 O -0.350 6.350 16 C 0.443 3.557 17 O -0.506 6.506 18 C 0.117 3.883 19 N -0.595 5.595 20 C 0.112 3.888 21 C -0.154 4.154 22 C -0.118 4.118 23 C -0.115 4.115 24 C -0.134 4.134 25 C 0.521 3.479 26 O -0.543 6.543 27 C -0.049 4.049 28 C -0.196 4.196 29 H 0.271 0.729 30 H 0.130 0.870 31 H 0.109 0.891 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.097 0.903 45 H 0.090 0.910 46 H 0.113 0.887 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.070 -25.297 8.145 29.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.469 4.469 8 H 0.112 0.888 9 O -0.075 6.075 10 C 0.108 3.892 11 C -0.257 4.257 12 C -0.063 4.063 13 C -0.206 4.206 14 C 0.059 3.941 15 O -0.266 6.266 16 C 0.284 3.716 17 O -0.395 6.395 18 C -0.007 4.007 19 N -0.328 5.328 20 C -0.010 4.010 21 C -0.193 4.193 22 C -0.155 4.155 23 C -0.152 4.152 24 C -0.174 4.174 25 C 0.310 3.690 26 O -0.419 6.419 27 C -0.067 4.067 28 C -0.215 4.215 29 H 0.081 0.919 30 H 0.148 0.852 31 H 0.127 0.873 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.139 0.861 35 H 0.144 0.856 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.116 0.884 45 H 0.108 0.892 46 H 0.131 0.869 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.023 -24.683 7.776 28.535 hybrid contribution 0.393 0.767 -0.226 0.891 sum 12.415 -23.916 7.550 27.984 Atomic orbital electron populations 1.70048 1.06004 1.27781 1.45482 1.25330 0.95883 0.98963 0.96329 0.85617 0.79194 0.80141 0.78324 1.18998 1.20066 1.20039 1.21425 0.91953 0.80683 1.52805 0.88803 1.83974 1.34549 1.11579 1.77348 1.19438 0.90309 0.88053 0.91375 1.21152 0.93777 0.98888 1.11837 1.20634 0.98482 0.91532 0.95603 1.18863 0.93328 0.92869 1.15498 1.21684 0.98879 0.95768 0.77736 1.86648 1.65239 1.42552 1.32145 1.24183 0.75294 0.79027 0.93079 1.90580 1.49865 1.50531 1.48501 1.20982 0.98678 0.89849 0.91208 1.47583 1.05934 1.06534 1.72765 1.22040 0.98056 0.82890 0.98041 1.22059 0.97741 1.00761 0.98699 1.21126 0.93953 0.98042 1.02399 1.21230 0.98549 0.99205 0.96252 1.21982 1.00785 0.94656 0.99962 1.20649 0.82009 0.91574 0.74783 1.90745 1.71296 1.30578 1.49319 1.20492 0.92570 0.96933 0.96709 1.20192 0.99678 0.90139 1.11527 0.91919 0.85241 0.87314 0.91330 0.91287 0.86062 0.85582 0.90061 0.89460 0.88710 0.90851 0.91688 0.92101 0.91111 0.90690 0.88434 0.89193 0.86940 0.86203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.81 13.67 55.48 0.76 -24.05 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.29 29.55 -169.99 -5.02 15.27 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.39 -10.82 9.49 30.88 0.29 -10.53 16 8 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 9 O -0.17 -4.83 9.76 0.06 0.00 -4.83 16 10 C 0.16 3.89 6.65 -39.11 -0.26 3.63 16 11 C -0.24 -5.14 9.17 -39.39 -0.36 -5.50 16 12 C -0.04 -0.83 9.69 -39.61 -0.38 -1.21 16 13 C -0.20 -3.59 5.52 -104.58 -0.58 -4.17 16 14 C 0.13 1.99 5.59 36.01 0.20 2.19 16 15 O -0.35 -5.18 10.20 -39.28 -0.40 -5.58 16 16 C 0.44 5.84 8.02 36.00 0.29 6.12 16 17 O -0.51 -7.60 13.97 -18.75 -0.26 -7.86 16 18 C 0.12 1.13 5.98 -5.19 -0.03 1.10 16 19 N -0.59 -5.34 1.96 -174.29 -0.34 -5.68 16 20 C 0.11 0.63 5.94 -3.41 -0.02 0.61 16 21 C -0.15 -1.01 5.75 -27.09 -0.16 -1.17 16 22 C -0.12 -0.65 5.27 -27.97 -0.15 -0.80 16 23 C -0.11 -0.78 5.67 -27.31 -0.15 -0.93 16 24 C -0.13 -0.95 5.56 -27.49 -0.15 -1.10 16 25 C 0.52 5.69 6.79 -11.25 -0.08 5.61 16 26 O -0.54 -8.34 16.60 5.56 0.09 -8.25 16 27 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 28 C -0.20 -4.07 9.99 -39.39 -0.39 -4.46 16 29 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 31 H 0.11 1.79 8.06 -52.48 -0.42 1.37 16 32 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 33 H 0.07 0.96 8.07 -51.93 -0.42 0.54 16 34 H 0.12 0.74 7.84 -51.93 -0.41 0.34 16 35 H 0.13 1.30 7.38 -51.92 -0.38 0.91 16 36 H 0.08 0.29 6.72 -51.93 -0.35 -0.06 16 37 H 0.09 0.36 7.76 -51.93 -0.40 -0.04 16 38 H 0.09 0.96 5.71 -51.93 -0.30 0.66 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.23 7.89 -51.93 -0.41 -0.18 16 42 H 0.07 0.68 7.86 -51.93 -0.41 0.27 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.10 0.68 8.13 -51.93 -0.42 0.26 16 45 H 0.09 0.41 6.78 -51.93 -0.35 0.06 16 46 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 47 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 LS Contribution 387.29 15.07 5.84 5.84 Total: -1.00 -34.44 387.29 -8.26 -42.70 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -6.51 Total: 3.30 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -2.41 Total: -10.86 kcal Atomic # 7 Polarization: -30.15 SS G_CDS: 0.42 Total: -29.73 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.57 Total: -26.52 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.44 -8.26 -42.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733381783.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.585 kcal (2) G-P(sol) polarization free energy of solvation -34.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds