Wall clock time and date at job start Wed Apr 1 2020 04:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86794 * 119.99630 * 2 1 4 4 H 1.48498 * 109.46899 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47217 * 299.99927 * 3 2 1 6 6 H 1.48504 * 109.47264 * 60.00040 * 3 2 1 7 7 C 1.38646 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99936 * 179.97438 * 7 2 1 9 9 O 1.34830 * 120.00697 * 0.02562 * 7 2 1 10 10 C 1.35746 * 117.00475 * 185.05861 * 9 7 2 11 11 C 1.38882 * 120.06651 * 354.45879 * 10 9 7 12 12 C 1.38102 * 119.92931 * 180.02562 * 11 10 9 13 13 C 1.38295 * 120.07207 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.93340 * 179.97438 * 13 12 11 15 15 O 1.45189 * 109.47217 * 89.99542 * 14 13 12 16 16 C 1.34238 * 116.99979 * 180.02562 * 15 14 13 17 17 O 1.20823 * 119.99816 * 359.97438 * 16 15 14 18 18 C 1.50696 * 119.99981 * 180.02562 * 16 15 14 19 19 N 1.46508 * 109.46964 * 179.97438 * 18 16 15 20 20 C 1.47182 * 119.78517 * 269.72433 * 19 18 16 21 21 C 1.53498 * 108.37873 * 108.06181 * 20 19 18 22 22 C 1.51779 * 110.82083 * 86.59088 * 21 20 19 23 23 C 1.51789 * 113.80977 * 292.92475 * 22 21 20 24 24 C 1.53063 * 110.74256 * 66.80874 * 23 22 21 25 25 C 1.33376 * 119.78241 * 89.99622 * 19 18 16 26 26 O 1.21277 * 119.89260 * 0.28471 * 25 19 18 27 27 C 1.38304 * 120.13769 * 0.24507 * 13 12 11 28 28 C 1.38107 * 120.06580 * 359.46117 * 27 13 12 29 29 H 0.96995 * 120.00346 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.03384 * 0.02562 * 11 10 9 31 31 H 1.08003 * 119.96596 * 179.97438 * 12 11 10 32 32 H 1.09000 * 109.46792 * 329.99283 * 14 13 12 33 33 H 1.09000 * 109.46787 * 209.99556 * 14 13 12 34 34 H 1.08996 * 109.47902 * 59.99834 * 18 16 15 35 35 H 1.09010 * 109.46920 * 299.99356 * 18 16 15 36 36 H 1.09001 * 109.60593 * 227.79701 * 20 19 18 37 37 H 1.09006 * 109.60798 * 348.28693 * 20 19 18 38 38 H 1.09001 * 109.28473 * 326.21052 * 21 20 19 39 39 H 1.08998 * 109.13260 * 206.87014 * 21 20 19 40 40 H 1.09003 * 108.61364 * 171.81166 * 22 21 20 41 41 H 1.08997 * 108.61823 * 54.04248 * 22 21 20 42 42 H 1.09006 * 109.22451 * 306.48826 * 23 22 21 43 43 H 1.08996 * 109.22854 * 187.13345 * 23 22 21 44 44 H 1.09004 * 109.63067 * 155.38151 * 24 23 22 45 45 H 1.08999 * 109.79643 * 34.88654 * 24 23 22 46 46 H 1.07995 * 119.96757 * 179.70427 * 27 13 12 47 47 H 1.08007 * 120.03224 * 180.26959 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 0.0006 5 1 1.8907 2.3964 -1.2125 6 1 1.8907 2.3965 1.2125 7 6 2.0088 -1.2007 0.0005 8 1 3.0889 -1.2008 0.0001 9 8 1.3348 -2.3685 0.0005 10 6 2.0700 -3.5045 0.1077 11 6 3.4572 -3.4394 0.0952 12 6 4.2024 -4.5970 0.2039 13 6 3.5687 -5.8203 0.3246 14 6 4.3849 -7.0816 0.4424 15 8 4.6533 -7.3554 1.8428 16 6 5.3754 -8.4521 2.1218 17 8 5.7696 -9.1600 1.2256 18 6 5.6932 -8.8009 3.5530 19 7 6.4854 -10.0328 3.5910 20 6 5.8072 -11.3355 3.6868 21 6 5.9340 -12.0479 2.3330 22 6 7.2318 -12.8310 2.2549 23 6 8.4739 -11.9586 2.2385 24 6 8.6447 -11.2334 3.5756 25 6 7.8167 -9.9660 3.5440 26 8 8.3657 -8.8868 3.4753 27 6 2.1874 -5.8891 0.3318 28 6 1.4366 -4.7344 0.2295 29 1 -0.4850 0.8400 -0.0004 30 1 3.9527 -2.4844 0.0005 31 1 5.2812 -4.5471 0.1938 32 1 5.3275 -6.9555 -0.0903 33 1 3.8312 -7.9145 0.0090 34 1 4.7655 -8.9489 4.1057 35 1 6.2613 -7.9890 4.0073 36 1 6.2782 -11.9367 4.4645 37 1 4.7547 -11.1833 3.9260 38 1 5.9135 -11.3075 1.5333 39 1 5.0946 -12.7321 2.2094 40 1 7.2193 -13.4356 1.3480 41 1 7.2873 -13.4992 3.1143 42 1 8.3847 -11.2222 1.4398 43 1 9.3484 -12.5826 2.0545 44 1 9.6947 -10.9813 3.7239 45 1 8.3035 -11.8737 4.3891 46 1 1.6954 -6.8463 0.4213 47 1 0.3579 -4.7884 0.2395 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733381783.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:32 Heat of formation + Delta-G solvation = -145.564740 kcal Electronic energy + Delta-G solvation = -29656.974160 eV Core-core repulsion = 25383.689373 eV Total energy + Delta-G solvation = -4273.284786 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.98781 -41.05981 -40.66786 -38.59321 -37.77615 -37.28454 -35.68467 -34.38835 -32.27893 -31.99307 -31.86659 -30.27523 -27.86806 -27.11214 -26.25076 -24.89899 -23.71804 -22.63105 -22.09707 -21.46885 -19.94452 -19.86638 -18.95363 -18.87966 -18.39027 -18.12788 -17.38173 -17.09291 -16.42745 -16.30930 -16.16399 -15.79638 -15.58836 -15.25704 -15.20461 -14.82388 -14.71461 -14.49465 -14.42687 -14.36046 -13.99673 -13.85758 -13.64115 -13.50130 -13.19294 -13.06846 -13.04896 -12.67311 -12.45558 -12.42094 -12.27429 -12.11648 -11.84520 -11.76490 -11.68585 -11.46944 -11.36370 -11.23055 -10.85194 -10.84471 -9.95011 -9.87037 -9.08080 -8.51080 -6.19388 0.39142 0.52609 1.14005 1.32269 1.34658 1.43098 1.52615 1.77433 2.14011 2.16112 2.80065 3.11669 3.43161 3.45941 3.68100 3.85635 3.87422 3.88512 3.92227 3.95321 4.11178 4.15052 4.24755 4.26823 4.34854 4.39426 4.46790 4.51908 4.54969 4.60202 4.71387 4.82710 4.87033 4.96153 5.01080 5.10054 5.11198 5.19061 5.25748 5.29165 5.35573 5.38409 5.47509 5.62622 5.63521 5.66072 5.98267 6.08876 6.27618 6.70428 6.93543 7.06782 7.70904 8.71688 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.024978 B = 0.001795 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.720862 B =15590.812496 C =16153.839562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.020 4.020 3 Si 1.019 2.981 4 H -0.253 1.253 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.415 4.415 8 H 0.102 0.898 9 O -0.225 6.225 10 C 0.126 3.874 11 C -0.245 4.245 12 C -0.047 4.047 13 C -0.182 4.182 14 C 0.134 3.866 15 O -0.358 6.358 16 C 0.441 3.559 17 O -0.526 6.526 18 C 0.117 3.883 19 N -0.591 5.591 20 C 0.106 3.894 21 C -0.154 4.154 22 C -0.116 4.116 23 C -0.111 4.111 24 C -0.127 4.127 25 C 0.510 3.490 26 O -0.600 6.600 27 C -0.038 4.038 28 C -0.203 4.203 29 H 0.274 0.726 30 H 0.122 0.878 31 H 0.134 0.866 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.163 0.837 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.055 0.945 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.090 0.910 42 H 0.032 0.968 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.125 0.875 46 H 0.154 0.846 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.472 -28.750 9.697 33.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.218 4.218 3 Si 0.838 3.162 4 H -0.176 1.176 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.491 4.491 8 H 0.120 0.880 9 O -0.130 6.130 10 C 0.075 3.925 11 C -0.265 4.265 12 C -0.065 4.065 13 C -0.183 4.183 14 C 0.061 3.939 15 O -0.275 6.275 16 C 0.284 3.716 17 O -0.416 6.416 18 C -0.008 4.008 19 N -0.322 5.322 20 C -0.015 4.015 21 C -0.192 4.192 22 C -0.154 4.154 23 C -0.149 4.149 24 C -0.167 4.167 25 C 0.301 3.699 26 O -0.481 6.481 27 C -0.056 4.056 28 C -0.222 4.222 29 H 0.083 0.917 30 H 0.140 0.860 31 H 0.152 0.848 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.181 0.819 35 H 0.136 0.864 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.074 0.926 39 H 0.108 0.892 40 H 0.082 0.918 41 H 0.108 0.892 42 H 0.051 0.949 43 H 0.111 0.889 44 H 0.113 0.887 45 H 0.143 0.857 46 H 0.172 0.828 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 13.433 -28.229 9.335 32.626 hybrid contribution 0.089 1.412 -0.698 1.577 sum 13.522 -26.817 8.637 31.251 Atomic orbital electron populations 1.70179 1.07950 1.28898 1.48351 1.26586 0.96876 1.02706 0.95677 0.84528 0.78195 0.74835 0.78653 1.17636 1.19230 1.19238 1.21873 0.92578 0.81336 1.53344 0.88037 1.83945 1.35952 1.12604 1.80548 1.19993 0.91456 0.88131 0.92919 1.21226 0.93227 0.99826 1.12186 1.20931 0.99732 0.91020 0.94801 1.19241 0.93692 0.93515 1.11818 1.21591 0.98835 0.94942 0.78540 1.86619 1.65926 1.43593 1.31323 1.24932 0.74297 0.78014 0.94378 1.90597 1.50494 1.51002 1.49459 1.21190 1.00392 0.90230 0.88943 1.47776 1.05558 1.07605 1.71280 1.22396 0.99404 0.81367 0.98318 1.22027 0.98995 1.00241 0.97945 1.21135 0.92632 0.97876 1.03727 1.21218 1.00266 0.98645 0.94767 1.22027 1.00134 0.93318 1.01230 1.21419 0.82854 0.92019 0.73646 1.90712 1.72507 1.32804 1.52079 1.20900 0.92611 0.97486 0.94588 1.20474 1.00341 0.90118 1.11312 0.91683 0.86010 0.84823 0.91140 0.89369 0.81936 0.86447 0.87033 0.87350 0.92590 0.89222 0.91783 0.89166 0.94909 0.88919 0.88704 0.85653 0.82833 0.85912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.69 13.67 21.61 0.30 -55.39 16 2 C -0.02 -1.15 5.49 84.83 0.47 -0.68 16 3 Si 1.02 42.78 29.55 68.60 2.03 44.81 16 4 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 6 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 7 C -0.42 -24.08 9.49 67.92 0.64 -23.44 16 8 H 0.10 5.44 5.20 -2.91 -0.02 5.42 16 9 O -0.22 -13.39 9.76 -22.69 -0.22 -13.61 16 10 C 0.13 6.24 6.65 22.58 0.15 6.39 16 11 C -0.25 -10.82 9.17 22.39 0.21 -10.62 16 12 C -0.05 -1.69 9.69 22.25 0.22 -1.48 16 13 C -0.18 -5.95 5.52 -19.83 -0.11 -6.05 16 14 C 0.13 3.67 5.59 71.24 0.40 4.06 16 15 O -0.36 -9.71 10.20 -51.49 -0.53 -10.24 16 16 C 0.44 10.78 8.02 71.23 0.57 11.35 16 17 O -0.53 -15.15 13.97 21.97 0.31 -14.84 16 18 C 0.12 1.98 5.98 85.63 0.51 2.49 16 19 N -0.59 -9.18 1.96 -824.50 -1.61 -10.79 16 20 C 0.11 0.76 5.94 86.42 0.51 1.27 16 21 C -0.15 -1.57 5.75 30.36 0.17 -1.40 16 22 C -0.12 -0.92 5.27 29.79 0.16 -0.76 16 23 C -0.11 -1.30 5.67 30.22 0.17 -1.13 16 24 C -0.13 -1.52 5.56 30.10 0.17 -1.35 16 25 C 0.51 10.52 6.79 88.11 0.60 11.12 16 26 O -0.60 -18.65 16.60 -3.02 -0.05 -18.70 16 27 C -0.04 -1.25 9.69 22.25 0.22 -1.04 16 28 C -0.20 -8.44 9.99 22.39 0.22 -8.22 16 29 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 30 H 0.12 5.46 5.64 -2.91 -0.02 5.44 16 31 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 32 H 0.07 1.94 8.08 -2.39 -0.02 1.92 16 33 H 0.09 2.13 8.07 -2.39 -0.02 2.11 16 34 H 0.16 1.35 7.84 -2.39 -0.02 1.33 16 35 H 0.12 2.28 7.38 -2.38 -0.02 2.26 16 36 H 0.11 0.18 6.72 -2.39 -0.02 0.16 16 37 H 0.11 0.36 7.76 -2.38 -0.02 0.34 16 38 H 0.06 1.06 5.71 -2.39 -0.01 1.04 16 39 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.09 0.23 7.89 -2.39 -0.02 0.21 16 42 H 0.03 0.63 7.86 -2.38 -0.02 0.61 16 43 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.09 1.18 8.13 -2.38 -0.02 1.16 16 45 H 0.13 0.58 6.78 -2.39 -0.02 0.56 16 46 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 47 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 Total: -1.00 -82.30 387.29 6.49 -75.81 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.99 Total: 22.41 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: 5.28 Total: -19.46 kcal Atomic # 7 Polarization: -64.87 SS G_CDS: -1.32 Total: -66.18 kcal Atomic # 8 Polarization: -56.90 SS G_CDS: -0.49 Total: -57.39 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -82.30 6.49 -75.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733381783.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.754 kcal (2) G-P(sol) polarization free energy of solvation -82.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds