Wall clock time and date at job start Wed Apr 1 2020 04:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38304 * 120.07204 * 0.53100 * 12 11 10 14 14 C 1.50695 * 119.93307 * 179.74764 * 13 12 11 15 15 O 1.45203 * 109.46919 * 270.02071 * 14 13 12 16 16 C 1.34227 * 117.00241 * 179.97438 * 15 14 13 17 17 O 1.20834 * 119.99714 * 359.97438 * 16 15 14 18 18 C 1.50695 * 120.00540 * 180.02562 * 16 15 14 19 19 C 1.52995 * 109.47377 * 179.97438 * 18 16 15 20 20 C 1.53005 * 109.47361 * 179.97438 * 19 18 16 21 21 N 1.46498 * 109.47328 * 180.02562 * 20 19 18 22 22 C 1.34781 * 119.99729 * 180.02562 * 21 20 19 23 23 O 1.21277 * 119.99915 * 0.02562 * 22 21 20 24 24 C 1.50696 * 119.99559 * 180.02562 * 22 21 20 25 25 C 1.53004 * 117.49868 * 248.62210 * 24 22 21 26 26 C 1.53003 * 60.00026 * 252.51386 * 25 24 22 27 27 C 1.38299 * 120.13445 * 359.76820 * 13 12 11 28 28 C 1.38101 * 120.07425 * 359.95492 * 27 13 12 29 29 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 31 31 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 32 32 H 1.08998 * 109.47086 * 30.01537 * 14 13 12 33 33 H 1.08996 * 109.47192 * 150.02113 * 14 13 12 34 34 H 1.09004 * 109.47010 * 300.00596 * 18 16 15 35 35 H 1.09007 * 109.47032 * 59.99558 * 18 16 15 36 36 H 1.08998 * 109.47772 * 299.99919 * 19 18 16 37 37 H 1.09003 * 109.47282 * 60.00389 * 19 18 16 38 38 H 1.09004 * 109.47310 * 300.00969 * 20 19 18 39 39 H 1.09007 * 109.46747 * 59.99940 * 20 19 18 40 40 H 0.96998 * 119.99982 * 0.02562 * 21 20 19 41 41 H 1.08997 * 115.55616 * 34.32729 * 24 22 21 42 42 H 1.09007 * 117.49746 * 359.97438 * 25 24 22 43 43 H 1.08996 * 117.50214 * 145.02155 * 25 24 22 44 44 H 1.09002 * 117.49732 * 252.51227 * 26 25 24 45 45 H 1.08999 * 117.51876 * 107.47911 * 26 25 24 46 46 H 1.07999 * 119.96503 * 179.97438 * 27 13 12 47 47 H 1.07992 * 120.03608 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 8 4.6410 -7.6193 0.8783 16 6 5.3606 -8.7503 0.9479 17 8 5.7627 -9.2737 -0.0643 18 6 5.6659 -9.3679 2.2881 19 6 6.4928 -10.6394 2.0872 20 6 6.8034 -11.2661 3.4480 21 7 7.5957 -12.4833 3.2557 22 6 7.9878 -13.2076 4.3226 23 8 7.6843 -12.8521 5.4416 24 6 8.8033 -14.4593 4.1248 25 6 8.1349 -15.7967 4.4498 26 6 9.2175 -15.2376 5.3753 27 6 4.2024 -4.5970 -0.2043 28 6 3.4573 -3.4394 -0.0951 29 1 -0.4850 0.8400 0.0004 30 1 0.3579 -4.7892 -0.2301 31 1 1.6954 -6.8451 -0.4339 32 1 3.8358 -7.8149 -1.0361 33 1 5.3320 -6.8560 -0.9360 34 1 6.2298 -8.6592 2.8947 35 1 4.7332 -9.6176 2.7941 36 1 5.9286 -11.3479 1.4809 37 1 7.4255 -10.3901 1.5812 38 1 7.3678 -10.5575 4.0542 39 1 5.8709 -11.5154 3.9546 40 1 7.8381 -12.7678 2.3607 41 1 9.5048 -14.4366 3.2908 42 1 7.1054 -15.7711 4.8072 43 1 8.3965 -16.6540 3.8297 44 1 10.1913 -15.7271 5.3639 45 1 8.9004 -14.8440 6.3410 46 1 5.2812 -4.5470 -0.1945 47 1 3.9527 -2.4846 -0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733442041.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:12 Heat of formation + Delta-G solvation = -132.973151 kcal Electronic energy + Delta-G solvation = -27625.739664 eV Core-core repulsion = 23353.000890 eV Total energy + Delta-G solvation = -4272.738774 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.55506 -40.96036 -40.76172 -38.63784 -37.62477 -37.22441 -36.42763 -34.37934 -33.85852 -32.12410 -31.83075 -28.98018 -27.73314 -26.50444 -25.09808 -23.69812 -23.31867 -23.08155 -22.22359 -21.74286 -20.85409 -19.90999 -18.93364 -18.73683 -18.34776 -17.74938 -17.66335 -16.84233 -16.73751 -16.38708 -16.25858 -15.95747 -15.80457 -15.56975 -15.36551 -15.05609 -14.99165 -14.53270 -14.34099 -14.00099 -13.80682 -13.56494 -13.53144 -13.36891 -13.22108 -13.04520 -12.62735 -12.54308 -12.43939 -12.41316 -12.24656 -12.09248 -11.95635 -11.64092 -11.54636 -11.52988 -11.43751 -11.21029 -10.95745 -10.83171 -10.13371 -9.84863 -9.06667 -8.49889 -6.18348 0.43414 0.54741 1.22444 1.35700 1.42362 1.45860 1.53750 1.77913 2.16186 2.22392 2.81846 2.93052 3.13505 3.44557 3.60996 3.73536 3.86091 3.89860 3.91286 3.95661 3.96587 3.99269 4.11820 4.18254 4.25476 4.30103 4.47258 4.49052 4.54124 4.62884 4.71352 4.73463 4.75132 4.92856 4.98329 5.03986 5.06301 5.11519 5.16630 5.21786 5.22793 5.40435 5.45360 5.56473 5.65247 5.68049 5.99490 6.11464 6.51520 6.76602 6.94807 7.21366 7.72773 8.73086 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.026349 B = 0.001267 C = 0.001245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.389310 B =22093.680969 C =22481.313746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.020 4.020 3 Si 1.018 2.982 4 H -0.250 1.250 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.416 4.416 8 H 0.104 0.896 9 O -0.227 6.227 10 C 0.125 3.875 11 C -0.206 4.206 12 C -0.042 4.042 13 C -0.183 4.183 14 C 0.131 3.869 15 O -0.361 6.361 16 C 0.461 3.539 17 O -0.540 6.540 18 C -0.109 4.109 19 C -0.107 4.107 20 C 0.120 3.880 21 N -0.716 5.716 22 C 0.534 3.466 23 O -0.590 6.590 24 C -0.199 4.199 25 C -0.143 4.143 26 C -0.157 4.157 27 C -0.043 4.043 28 C -0.246 4.246 29 H 0.274 0.726 30 H 0.119 0.881 31 H 0.150 0.850 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.417 0.583 41 H 0.153 0.847 42 H 0.086 0.914 43 H 0.131 0.869 44 H 0.125 0.875 45 H 0.083 0.917 46 H 0.142 0.858 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.903 -28.579 4.177 34.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.218 4.218 3 Si 0.838 3.162 4 H -0.174 1.174 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.492 4.492 8 H 0.122 0.878 9 O -0.133 6.133 10 C 0.074 3.926 11 C -0.225 4.225 12 C -0.059 4.059 13 C -0.184 4.184 14 C 0.058 3.942 15 O -0.278 6.278 16 C 0.306 3.694 17 O -0.430 6.430 18 C -0.147 4.147 19 C -0.145 4.145 20 C -0.003 4.003 21 N -0.367 5.367 22 C 0.322 3.678 23 O -0.471 6.471 24 C -0.220 4.220 25 C -0.180 4.180 26 C -0.194 4.194 27 C -0.061 4.061 28 C -0.265 4.265 29 H 0.083 0.917 30 H 0.137 0.863 31 H 0.168 0.832 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.254 0.746 41 H 0.170 0.830 42 H 0.105 0.895 43 H 0.149 0.851 44 H 0.143 0.857 45 H 0.102 0.898 46 H 0.159 0.841 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 18.364 -28.246 4.643 34.009 hybrid contribution -0.119 1.183 -0.550 1.310 sum 18.245 -27.063 4.093 32.895 Atomic orbital electron populations 1.70181 1.08051 1.28879 1.48434 1.26589 0.96821 1.02726 0.95644 0.84529 0.78320 0.74802 0.78577 1.17367 1.19344 1.19348 1.21900 0.92635 0.81293 1.53333 0.87847 1.83947 1.36069 1.12676 1.80627 1.20005 0.91630 0.88001 0.92962 1.20452 1.00219 0.90347 1.11511 1.20907 0.92964 0.97255 0.94821 1.19293 0.93552 0.93502 1.12044 1.21623 0.99347 0.92115 0.81100 1.86630 1.66211 1.39648 1.35318 1.24285 0.73880 0.78064 0.93202 1.90652 1.50954 1.62394 1.39000 1.21377 1.04513 0.97874 0.90927 1.21460 1.01190 0.95680 0.96166 1.21296 0.95804 0.86097 0.97131 1.45846 1.54776 1.26138 1.09974 1.20258 0.78970 0.84668 0.83922 1.90693 1.58442 1.71991 1.25925 1.22302 1.04739 0.90698 1.04254 1.23032 0.98102 0.94314 1.02580 1.23007 1.01082 1.01629 0.93699 1.20962 0.99991 0.90812 0.94369 1.21250 0.93060 1.00064 1.12095 0.91729 0.86298 0.83213 0.89746 0.90011 0.85604 0.85549 0.90106 0.90136 0.91478 0.91495 0.74584 0.82981 0.89517 0.85106 0.85687 0.89827 0.84065 0.85881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.51 13.67 21.62 0.30 -55.22 16 2 C -0.02 -1.10 5.49 84.84 0.47 -0.64 16 3 Si 1.02 42.04 29.55 68.60 2.03 44.07 16 4 H -0.25 -9.51 7.11 99.48 0.71 -8.81 16 5 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 6 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.42 -23.77 9.49 67.92 0.64 -23.13 16 8 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16 9 O -0.23 -13.45 9.76 -22.72 -0.22 -13.67 16 10 C 0.13 6.09 6.65 22.58 0.15 6.24 16 11 C -0.21 -8.52 9.99 22.39 0.22 -8.29 16 12 C -0.04 -1.35 9.69 22.25 0.22 -1.14 16 13 C -0.18 -5.66 5.52 -19.84 -0.11 -5.77 16 14 C 0.13 3.22 5.59 71.23 0.40 3.62 16 15 O -0.36 -8.66 10.20 -51.39 -0.52 -9.18 16 16 C 0.46 9.18 7.96 71.23 0.57 9.75 16 17 O -0.54 -13.20 15.73 21.94 0.35 -12.86 16 18 C -0.11 -1.25 5.81 29.84 0.17 -1.07 16 19 C -0.11 -1.04 4.62 30.59 0.14 -0.90 16 20 C 0.12 1.35 5.67 86.38 0.49 1.84 16 21 N -0.72 -7.63 5.56 -463.05 -2.57 -10.21 16 22 C 0.53 8.47 7.61 87.65 0.67 9.14 16 23 O -0.59 -14.94 16.26 -3.02 -0.05 -14.98 16 24 C -0.20 -1.81 6.19 -11.54 -0.07 -1.88 16 25 C -0.14 -1.06 10.23 30.60 0.31 -0.74 16 26 C -0.16 -1.51 10.04 30.60 0.31 -1.20 16 27 C -0.04 -1.46 9.69 22.25 0.22 -1.24 16 28 C -0.25 -10.40 9.17 22.39 0.21 -10.20 16 29 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 30 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 31 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 32 H 0.08 1.89 8.08 -2.39 -0.02 1.87 16 33 H 0.08 1.87 8.08 -2.39 -0.02 1.85 16 34 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.13 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.08 0.82 8.10 -2.39 -0.02 0.80 16 37 H 0.08 0.82 8.10 -2.39 -0.02 0.80 16 38 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 40 H 0.42 2.08 8.47 -92.71 -0.79 1.30 16 41 H 0.15 0.49 8.14 -2.39 -0.02 0.48 16 42 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 43 H 0.13 0.30 8.14 -2.39 -0.02 0.28 16 44 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.08 1.24 7.67 -2.39 -0.02 1.22 16 46 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 47 H 0.12 5.28 5.64 -2.91 -0.02 5.26 16 Total: -1.00 -79.65 408.43 4.51 -75.14 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 0.21 Total: 22.52 kcal Atomic # 6 Polarization: -30.61 SS G_CDS: 5.00 Total: -25.61 kcal Atomic # 7 Polarization: -63.14 SS G_CDS: -2.28 Total: -65.42 kcal Atomic # 8 Polarization: -50.25 SS G_CDS: -0.45 Total: -50.70 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -79.65 4.51 -75.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733442041.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.830 kcal (2) G-P(sol) polarization free energy of solvation -79.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds