Wall clock time and date at job start Wed Apr 1 2020 04:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38304 * 120.07204 * 0.53100 * 12 11 10 14 14 C 1.50695 * 119.93307 * 179.74764 * 13 12 11 15 15 C 1.50705 * 109.46992 * 270.02253 * 14 13 12 16 16 O 1.20830 * 119.99794 * 359.97438 * 15 14 13 17 17 O 1.34225 * 120.00089 * 180.02562 * 15 14 13 18 18 C 1.45203 * 117.00065 * 180.02562 * 17 15 14 19 19 C 1.52998 * 109.47097 * 179.97438 * 18 17 15 20 20 C 1.53000 * 109.46926 * 179.97438 * 19 18 17 21 21 N 1.46503 * 109.46795 * 179.97438 * 20 19 18 22 22 C 1.46762 * 124.34894 * 269.72181 * 21 20 19 23 23 C 1.54668 * 105.38054 * 162.85764 * 22 21 20 24 24 C 1.54628 * 101.68612 * 25.76902 * 23 22 21 25 25 C 1.34424 * 124.34948 * 90.02567 * 21 20 19 26 26 O 1.21282 * 124.94070 * 0.42677 * 25 21 20 27 27 C 1.38299 * 120.13445 * 359.76820 * 13 12 11 28 28 C 1.38101 * 120.07425 * 359.95492 * 27 13 12 29 29 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 31 31 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 32 32 H 1.08998 * 109.47086 * 30.01537 * 14 13 12 33 33 H 1.08996 * 109.47192 * 150.02113 * 14 13 12 34 34 H 1.09005 * 109.46596 * 299.99451 * 18 17 15 35 35 H 1.08992 * 109.47155 * 59.99489 * 18 17 15 36 36 H 1.09000 * 109.47415 * 299.99594 * 19 18 17 37 37 H 1.09005 * 109.47429 * 59.99471 * 19 18 17 38 38 H 1.08998 * 109.47108 * 299.99346 * 20 19 18 39 39 H 1.08993 * 109.47254 * 60.00285 * 20 19 18 40 40 H 1.09000 * 110.24700 * 281.98552 * 22 21 20 41 41 H 1.08996 * 110.24673 * 43.98842 * 22 21 20 42 42 H 1.08999 * 111.19173 * 267.59375 * 23 22 21 43 43 H 1.08999 * 110.82011 * 143.78037 * 23 22 21 44 44 H 1.09000 * 110.48579 * 216.31260 * 24 23 22 45 45 H 1.09000 * 110.60265 * 93.71730 * 24 23 22 46 46 H 1.07999 * 119.96503 * 179.97438 * 27 13 12 47 47 H 1.07992 * 120.03608 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 6 4.6507 -7.6397 0.9284 16 8 4.2217 -7.0715 1.9047 17 8 5.3648 -8.7676 1.0680 18 6 5.5811 -9.2477 2.4212 19 6 6.4084 -10.5341 2.3798 20 6 6.6368 -11.0396 3.8057 21 7 7.4285 -12.2717 3.7659 22 6 6.8569 -13.6208 3.6813 23 6 8.0217 -14.5321 3.2282 24 6 9.2514 -13.7450 3.7374 25 6 8.7714 -12.3121 3.8082 26 8 9.4933 -11.3410 3.8915 27 6 4.2024 -4.5970 -0.2043 28 6 3.4573 -3.4394 -0.0951 29 1 -0.4850 0.8400 0.0004 30 1 0.3579 -4.7892 -0.2301 31 1 1.6954 -6.8451 -0.4339 32 1 3.8358 -7.8149 -1.0361 33 1 5.3320 -6.8560 -0.9360 34 1 6.1154 -8.4900 2.9944 35 1 4.6196 -9.4495 2.8931 36 1 5.8738 -11.2917 1.8066 37 1 7.3700 -10.3327 1.9075 38 1 7.1717 -10.2820 4.3784 39 1 5.6755 -11.2410 4.2781 40 1 6.4860 -13.9352 4.6568 41 1 6.0530 -13.6444 2.9457 42 1 8.0445 -14.6321 2.1431 43 1 7.9581 -15.5091 3.7072 44 1 10.0799 -13.8355 3.0349 45 1 9.5497 -14.0966 4.7251 46 1 5.2812 -4.5470 -0.1945 47 1 3.9527 -2.4846 -0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733497460.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:45 Heat of formation + Delta-G solvation = -127.851344 kcal Electronic energy + Delta-G solvation = -28361.365495 eV Core-core repulsion = 24088.848819 eV Total energy + Delta-G solvation = -4272.516676 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.84399 -40.39851 -38.97808 -37.14244 -36.84078 -36.21684 -34.73886 -32.52738 -31.71644 -31.13300 -30.17447 -28.07748 -27.26904 -26.03537 -25.09938 -22.62200 -22.28506 -21.99693 -21.56139 -20.19755 -19.76757 -18.00194 -17.65886 -17.29349 -17.04386 -16.94294 -16.72517 -16.06707 -15.84412 -14.98822 -14.65429 -14.52186 -14.34764 -14.30299 -14.22108 -13.86424 -13.61284 -13.52696 -13.30841 -13.14323 -12.87980 -12.78357 -12.71730 -12.50193 -12.06349 -11.90601 -11.77505 -11.60479 -11.57017 -11.43093 -11.29207 -10.90825 -10.79167 -10.62478 -10.61439 -10.42003 -10.30293 -10.21306 -9.33584 -9.25727 -8.83779 -8.17409 -7.20450 -6.45583 -4.04029 2.04645 2.16842 2.23569 2.37935 2.43074 2.90909 3.13662 3.14451 3.20055 3.81504 3.90435 3.96820 4.24079 4.40248 4.45415 4.51350 4.63346 4.65949 4.84380 4.91045 4.94697 4.96870 5.07866 5.10204 5.13684 5.16407 5.21828 5.25028 5.29344 5.37477 5.40630 5.56489 5.62532 5.70146 5.72004 5.82736 6.02577 6.20304 6.39689 6.45698 6.62072 6.69092 6.89615 7.04429 7.21718 7.34179 7.43555 7.71510 7.80974 7.91846 7.99741 9.00149 9.69819 10.72399 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.026674 B = 0.001447 C = 0.001411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.470770 B =19341.912369 C =19840.423183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.392 4.392 8 H 0.093 0.907 9 O -0.176 6.176 10 C 0.159 3.841 11 C -0.192 4.192 12 C -0.056 4.056 13 C -0.184 4.184 14 C -0.050 4.050 15 C 0.455 3.545 16 O -0.491 6.491 17 O -0.364 6.364 18 C 0.069 3.931 19 C -0.135 4.135 20 C 0.128 3.872 21 N -0.620 5.620 22 C 0.100 3.900 23 C -0.132 4.132 24 C -0.156 4.156 25 C 0.514 3.486 26 O -0.529 6.529 27 C -0.053 4.053 28 C -0.233 4.233 29 H 0.270 0.730 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.967 -29.950 4.371 33.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.111 0.889 9 O -0.079 6.079 10 C 0.105 3.895 11 C -0.211 4.211 12 C -0.075 4.075 13 C -0.185 4.185 14 C -0.087 4.087 15 C 0.297 3.703 16 O -0.376 6.376 17 O -0.282 6.282 18 C -0.006 4.006 19 C -0.174 4.174 20 C 0.006 3.994 21 N -0.354 5.354 22 C -0.023 4.023 23 C -0.170 4.170 24 C -0.196 4.196 25 C 0.302 3.698 26 O -0.404 6.404 27 C -0.071 4.071 28 C -0.252 4.252 29 H 0.080 0.920 30 H 0.136 0.864 31 H 0.128 0.872 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.110 0.890 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 13.745 -28.978 4.783 32.427 hybrid contribution 0.372 0.813 0.217 0.920 sum 14.116 -28.164 5.001 31.898 Atomic orbital electron populations 1.70048 1.05973 1.27599 1.46011 1.25302 0.95849 0.98859 0.96498 0.85636 0.79166 0.80310 0.78254 1.19072 1.20117 1.20128 1.21400 0.91880 0.80781 1.52720 0.88941 1.83975 1.34439 1.11519 1.78003 1.19408 0.90295 0.88038 0.91740 1.20156 0.99551 0.90278 1.11152 1.20418 0.92637 0.96758 0.97669 1.18641 0.93285 0.92358 1.14220 1.20092 1.02065 0.96327 0.90220 1.24236 0.74747 0.77812 0.93530 1.90708 1.47380 1.58392 1.41112 1.86492 1.67840 1.41596 1.32290 1.22810 1.00272 0.95715 0.81766 1.21915 1.01344 0.96208 0.97901 1.21223 0.96141 0.85743 0.96274 1.48270 1.06837 1.06840 1.73498 1.22172 0.97008 0.81135 1.02012 1.22636 0.93158 0.98777 1.02433 1.22340 0.99689 0.92988 1.04570 1.21002 0.82152 0.91537 0.75105 1.90760 1.59069 1.40949 1.49668 1.20540 0.98193 0.91774 0.96614 1.21116 0.93795 0.98857 1.11459 0.92045 0.86399 0.87201 0.87790 0.87806 0.91039 0.91116 0.90505 0.90321 0.89425 0.89717 0.90796 0.90087 0.89771 0.89034 0.87946 0.87760 0.87619 0.85435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.43 13.67 55.48 0.76 -24.67 16 2 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 20.74 29.55 -169.99 -5.02 15.71 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.39 -11.09 9.49 30.89 0.29 -10.80 16 8 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 9 O -0.18 -5.12 9.76 0.05 0.00 -5.11 16 10 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16 11 C -0.19 -4.16 9.99 -39.39 -0.39 -4.55 16 12 C -0.06 -1.03 9.69 -39.61 -0.38 -1.42 16 13 C -0.18 -3.20 4.38 -104.58 -0.46 -3.66 16 14 C -0.05 -0.64 5.94 -29.04 -0.17 -0.82 16 15 C 0.45 6.62 7.95 36.01 0.29 6.90 16 16 O -0.49 -9.00 15.78 -18.75 -0.30 -9.30 16 17 O -0.36 -4.49 10.22 -39.24 -0.40 -4.90 16 18 C 0.07 0.70 5.47 37.16 0.20 0.90 16 19 C -0.14 -1.06 5.92 -26.73 -0.16 -1.22 16 20 C 0.13 0.88 5.93 -4.04 -0.02 0.85 16 21 N -0.62 -4.10 2.93 -172.30 -0.51 -4.60 16 22 C 0.10 0.31 7.36 -3.02 -0.02 0.29 16 23 C -0.13 -0.27 7.19 -25.00 -0.18 -0.45 16 24 C -0.16 -0.68 6.86 -26.74 -0.18 -0.86 16 25 C 0.51 4.50 8.02 -10.86 -0.09 4.41 16 26 O -0.53 -7.12 17.59 5.56 0.10 -7.02 16 27 C -0.05 -1.00 9.69 -39.61 -0.38 -1.39 16 28 C -0.23 -5.22 9.17 -39.39 -0.36 -5.58 16 29 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.12 2.45 8.06 -52.49 -0.42 2.02 16 31 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 32 H 0.10 1.08 8.08 -51.93 -0.42 0.66 16 33 H 0.10 1.12 8.08 -51.93 -0.42 0.70 16 34 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 35 H 0.07 0.68 8.13 -51.93 -0.42 0.25 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.72 7.92 -51.93 -0.41 0.31 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 41 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 42 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 43 H 0.09 0.03 8.14 -51.93 -0.42 -0.40 16 44 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 47 H 0.13 2.85 5.64 -52.49 -0.30 2.55 16 LS Contribution 402.97 15.07 6.07 6.07 Total: -1.00 -36.67 402.97 -8.55 -45.22 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.87 Total: 1.30 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -2.38 Total: -12.70 kcal Atomic # 7 Polarization: -29.53 SS G_CDS: 0.25 Total: -29.28 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.60 Total: -26.33 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.67 -8.55 -45.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733497460.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.627 kcal (2) G-P(sol) polarization free energy of solvation -36.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds