Wall clock time and date at job start Wed Apr 1 2020 04:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38304 * 120.07204 * 0.53100 * 12 11 10 14 14 C 1.50695 * 119.93307 * 179.74764 * 13 12 11 15 15 C 1.50705 * 109.46992 * 270.02253 * 14 13 12 16 16 O 1.20830 * 119.99794 * 359.97438 * 15 14 13 17 17 O 1.34225 * 120.00089 * 180.02562 * 15 14 13 18 18 C 1.45203 * 117.00065 * 180.02562 * 17 15 14 19 19 C 1.52998 * 109.47097 * 179.97438 * 18 17 15 20 20 C 1.53000 * 109.46926 * 179.97438 * 19 18 17 21 21 N 1.46503 * 109.46795 * 179.97438 * 20 19 18 22 22 C 1.46762 * 124.34894 * 269.72181 * 21 20 19 23 23 C 1.54668 * 105.38054 * 162.85764 * 22 21 20 24 24 C 1.54628 * 101.68612 * 25.76902 * 23 22 21 25 25 C 1.34424 * 124.34948 * 90.02567 * 21 20 19 26 26 O 1.21282 * 124.94070 * 0.42677 * 25 21 20 27 27 C 1.38299 * 120.13445 * 359.76820 * 13 12 11 28 28 C 1.38101 * 120.07425 * 359.95492 * 27 13 12 29 29 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 31 31 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 32 32 H 1.08998 * 109.47086 * 30.01537 * 14 13 12 33 33 H 1.08996 * 109.47192 * 150.02113 * 14 13 12 34 34 H 1.09005 * 109.46596 * 299.99451 * 18 17 15 35 35 H 1.08992 * 109.47155 * 59.99489 * 18 17 15 36 36 H 1.09000 * 109.47415 * 299.99594 * 19 18 17 37 37 H 1.09005 * 109.47429 * 59.99471 * 19 18 17 38 38 H 1.08998 * 109.47108 * 299.99346 * 20 19 18 39 39 H 1.08993 * 109.47254 * 60.00285 * 20 19 18 40 40 H 1.09000 * 110.24700 * 281.98552 * 22 21 20 41 41 H 1.08996 * 110.24673 * 43.98842 * 22 21 20 42 42 H 1.08999 * 111.19173 * 267.59375 * 23 22 21 43 43 H 1.08999 * 110.82011 * 143.78037 * 23 22 21 44 44 H 1.09000 * 110.48579 * 216.31260 * 24 23 22 45 45 H 1.09000 * 110.60265 * 93.71730 * 24 23 22 46 46 H 1.07999 * 119.96503 * 179.97438 * 27 13 12 47 47 H 1.07992 * 120.03608 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 6 4.6507 -7.6397 0.9284 16 8 4.2217 -7.0715 1.9047 17 8 5.3648 -8.7676 1.0680 18 6 5.5811 -9.2477 2.4212 19 6 6.4084 -10.5341 2.3798 20 6 6.6368 -11.0396 3.8057 21 7 7.4285 -12.2717 3.7659 22 6 6.8569 -13.6208 3.6813 23 6 8.0217 -14.5321 3.2282 24 6 9.2514 -13.7450 3.7374 25 6 8.7714 -12.3121 3.8082 26 8 9.4933 -11.3410 3.8915 27 6 4.2024 -4.5970 -0.2043 28 6 3.4573 -3.4394 -0.0951 29 1 -0.4850 0.8400 0.0004 30 1 0.3579 -4.7892 -0.2301 31 1 1.6954 -6.8451 -0.4339 32 1 3.8358 -7.8149 -1.0361 33 1 5.3320 -6.8560 -0.9360 34 1 6.1154 -8.4900 2.9944 35 1 4.6196 -9.4495 2.8931 36 1 5.8738 -11.2917 1.8066 37 1 7.3700 -10.3327 1.9075 38 1 7.1717 -10.2820 4.3784 39 1 5.6755 -11.2410 4.2781 40 1 6.4860 -13.9352 4.6568 41 1 6.0530 -13.6444 2.9457 42 1 8.0445 -14.6321 2.1431 43 1 7.9581 -15.5091 3.7072 44 1 10.0799 -13.8355 3.0349 45 1 9.5497 -14.0966 4.7251 46 1 5.2812 -4.5470 -0.1945 47 1 3.9527 -2.4846 -0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733497460.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:44 Heat of formation + Delta-G solvation = -150.715315 kcal Electronic energy + Delta-G solvation = -28362.356951 eV Core-core repulsion = 24088.848819 eV Total energy + Delta-G solvation = -4273.508132 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.62449 -41.31808 -40.68568 -38.57109 -37.70435 -37.39964 -35.34454 -34.43105 -33.07158 -31.88502 -31.80234 -28.63668 -28.43954 -27.34485 -26.56910 -23.67506 -23.37218 -22.77075 -22.66590 -21.55114 -20.36865 -19.87361 -18.88012 -18.69396 -17.91246 -17.77538 -17.38909 -17.12560 -16.55575 -16.37292 -16.29151 -15.94819 -15.57881 -15.52370 -15.12019 -14.83800 -14.73285 -14.49421 -14.35543 -14.27309 -14.13140 -13.81126 -13.59514 -13.34407 -13.31183 -13.00660 -12.88455 -12.59323 -12.52978 -12.35346 -12.31324 -12.29654 -12.15703 -12.10779 -11.83646 -11.53094 -11.51134 -11.20499 -10.87503 -10.81525 -9.79940 -9.78410 -8.96888 -8.49219 -6.17477 0.56237 0.58537 1.25132 1.33786 1.40588 1.47283 1.52197 1.70117 2.11074 2.16269 2.81893 3.14848 3.43149 3.48620 3.64996 3.72041 3.80539 3.87267 3.93170 4.01144 4.08430 4.15326 4.17750 4.21560 4.26522 4.41974 4.43844 4.51061 4.56122 4.67375 4.71708 4.72043 4.77514 4.87173 4.92774 4.98321 5.05761 5.12189 5.12764 5.24843 5.26204 5.44535 5.52958 5.55065 5.68906 5.71606 6.00954 6.11390 6.18943 6.80673 6.95431 7.11402 7.75480 8.74179 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.026674 B = 0.001447 C = 0.001411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.470770 B =19341.912369 C =19840.423183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.020 2.980 4 H -0.253 1.253 5 H -0.266 1.266 6 H -0.269 1.269 7 C -0.415 4.415 8 H 0.101 0.899 9 O -0.232 6.232 10 C 0.116 3.884 11 C -0.206 4.206 12 C -0.052 4.052 13 C -0.159 4.159 14 C -0.048 4.048 15 C 0.462 3.538 16 O -0.537 6.537 17 O -0.357 6.357 18 C 0.066 3.934 19 C -0.119 4.119 20 C 0.126 3.874 21 N -0.618 5.618 22 C 0.093 3.907 23 C -0.121 4.121 24 C -0.151 4.151 25 C 0.497 3.503 26 O -0.591 6.591 27 C -0.057 4.057 28 C -0.246 4.246 29 H 0.273 0.727 30 H 0.116 0.884 31 H 0.152 0.848 32 H 0.145 0.855 33 H 0.137 0.863 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.111 0.889 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.118 0.882 44 H 0.104 0.896 45 H 0.117 0.883 46 H 0.139 0.861 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.621 -33.813 3.722 37.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.219 4.219 3 Si 0.839 3.161 4 H -0.176 1.176 5 H -0.191 1.191 6 H -0.194 1.194 7 C -0.491 4.491 8 H 0.118 0.882 9 O -0.138 6.138 10 C 0.066 3.934 11 C -0.225 4.225 12 C -0.069 4.069 13 C -0.160 4.160 14 C -0.085 4.085 15 C 0.306 3.694 16 O -0.426 6.426 17 O -0.274 6.274 18 C -0.009 4.009 19 C -0.158 4.158 20 C 0.003 3.997 21 N -0.351 5.351 22 C -0.029 4.029 23 C -0.159 4.159 24 C -0.191 4.191 25 C 0.287 3.713 26 O -0.472 6.472 27 C -0.075 4.075 28 C -0.265 4.265 29 H 0.082 0.918 30 H 0.134 0.866 31 H 0.170 0.830 32 H 0.162 0.838 33 H 0.154 0.846 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.129 0.871 40 H 0.108 0.892 41 H 0.114 0.886 42 H 0.107 0.893 43 H 0.136 0.864 44 H 0.122 0.878 45 H 0.135 0.865 46 H 0.156 0.844 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 15.410 -32.952 4.116 36.610 hybrid contribution -0.023 1.585 0.426 1.641 sum 15.386 -31.368 4.542 35.232 Atomic orbital electron populations 1.70186 1.08001 1.28778 1.48780 1.26595 0.96872 1.02699 0.95772 0.84520 0.78163 0.74792 0.78656 1.17628 1.19056 1.19353 1.21869 0.92515 0.81457 1.53282 0.88206 1.83937 1.35997 1.12641 1.81257 1.19980 0.91604 0.88051 0.93785 1.20458 1.00072 0.90564 1.11410 1.20915 0.93208 0.97116 0.95698 1.19200 0.93513 0.93878 1.09421 1.20233 1.03438 0.94747 0.90102 1.24379 0.73882 0.77754 0.93369 1.90722 1.49426 1.59768 1.42668 1.86475 1.66967 1.40538 1.33429 1.22997 1.00987 0.96235 0.80665 1.21787 0.99967 0.95492 0.98542 1.21223 0.97060 0.85816 0.95578 1.48461 1.06442 1.08142 1.72063 1.22491 0.97671 0.79164 1.03526 1.22682 0.90992 0.99270 1.02927 1.22383 1.00847 0.90292 1.05579 1.21863 0.82675 0.92661 0.74098 1.90714 1.60594 1.43228 1.52633 1.20955 0.99806 0.91208 0.95530 1.21227 0.93182 1.00033 1.12035 0.91780 0.86630 0.82997 0.83775 0.84566 0.92332 0.90158 0.88692 0.92333 0.91631 0.87105 0.89195 0.88565 0.89297 0.86411 0.87768 0.86467 0.84359 0.86434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.34 13.67 21.62 0.30 -57.04 16 2 C -0.02 -1.27 5.49 84.84 0.47 -0.80 16 3 Si 1.02 43.86 29.55 68.60 2.03 45.89 16 4 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 6 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 7 C -0.42 -24.88 9.49 67.92 0.64 -24.24 16 8 H 0.10 5.54 5.20 -2.91 -0.02 5.52 16 9 O -0.23 -14.40 9.76 -22.72 -0.22 -14.62 16 10 C 0.12 6.02 6.65 22.58 0.15 6.17 16 11 C -0.21 -9.04 9.99 22.39 0.22 -8.82 16 12 C -0.05 -1.75 9.69 22.25 0.22 -1.54 16 13 C -0.16 -5.00 4.38 -19.84 -0.09 -5.09 16 14 C -0.05 -1.00 5.94 29.10 0.17 -0.83 16 15 C 0.46 11.79 7.95 71.24 0.57 12.36 16 16 O -0.54 -18.57 15.78 21.95 0.35 -18.22 16 17 O -0.36 -7.63 10.22 -51.37 -0.53 -8.16 16 18 C 0.07 1.20 5.47 71.98 0.39 1.60 16 19 C -0.12 -1.64 5.92 30.59 0.18 -1.46 16 20 C 0.13 1.55 5.93 86.38 0.51 2.06 16 21 N -0.62 -7.14 2.93 -817.61 -2.40 -9.53 16 22 C 0.09 0.26 7.36 86.90 0.64 0.90 16 23 C -0.12 -0.07 7.19 31.72 0.23 0.15 16 24 C -0.15 -1.04 6.86 30.59 0.21 -0.83 16 25 C 0.50 8.48 8.02 87.90 0.71 9.19 16 26 O -0.59 -16.67 17.59 -3.04 -0.05 -16.72 16 27 C -0.06 -2.05 9.69 22.25 0.22 -1.84 16 28 C -0.25 -11.21 9.17 22.39 0.21 -11.01 16 29 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 30 H 0.12 4.98 8.06 -2.91 -0.02 4.96 16 31 H 0.15 3.88 8.06 -2.91 -0.02 3.85 16 32 H 0.14 1.99 8.08 -2.39 -0.02 1.97 16 33 H 0.14 2.11 8.08 -2.39 -0.02 2.09 16 34 H 0.06 1.24 8.13 -2.38 -0.02 1.22 16 35 H 0.08 1.35 8.13 -2.39 -0.02 1.33 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.06 1.06 8.14 -2.38 -0.02 1.05 16 38 H 0.07 1.11 7.92 -2.39 -0.02 1.09 16 39 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 41 H 0.10 0.03 8.14 -2.39 -0.02 0.01 16 42 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 43 H 0.12 -0.47 8.14 -2.39 -0.02 -0.49 16 44 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.14 4.04 8.06 -2.91 -0.02 4.01 16 47 H 0.12 5.47 5.64 -2.91 -0.02 5.46 16 Total: -1.00 -88.79 402.97 6.09 -82.70 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.98 Total: 19.72 kcal Atomic # 6 Polarization: -29.66 SS G_CDS: 5.64 Total: -24.01 kcal Atomic # 7 Polarization: -64.47 SS G_CDS: -2.10 Total: -66.57 kcal Atomic # 8 Polarization: -57.26 SS G_CDS: -0.45 Total: -57.72 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -88.79 6.09 -82.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733497460.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.017 kcal (2) G-P(sol) polarization free energy of solvation -88.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds