Wall clock time and date at job start Wed Apr 1 2020 04:56:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31520 * 1
3 3 Si 1.86804 * 119.99842 * 2 1
4 4 H 1.48503 * 109.46986 * 240.00069 * 3 2 1
5 5 H 1.48499 * 109.47009 * 359.97438 * 3 2 1
6 6 H 1.48497 * 109.47072 * 119.99841 * 3 2 1
7 7 C 1.37874 * 120.00199 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00160 * 180.02562 * 7 2 1
9 9 C 1.50705 * 119.99836 * 359.97438 * 7 2 1
10 10 N 1.46495 * 109.47213 * 180.02562 * 9 7 2
11 11 C 1.34782 * 119.99895 * 270.00059 * 10 9 7
12 12 O 1.21293 * 119.99854 * 4.43596 * 11 10 9
13 13 C 1.50698 * 120.00236 * 184.43603 * 11 10 9
14 14 O 1.45205 * 109.47182 * 174.72961 * 13 11 10
15 15 C 1.34221 * 116.99809 * 180.02562 * 14 13 11
16 16 O 1.20827 * 120.00329 * 0.02562 * 15 14 13
17 17 C 1.50706 * 119.99899 * 180.02562 * 15 14 13
18 18 C 1.52997 * 109.47177 * 180.02562 * 17 15 14
19 19 H 1.09002 * 110.80197 * 308.62594 * 18 17 15
20 20 C 1.54809 * 110.90917 * 184.99671 * 18 17 15
21 21 C 1.54100 * 104.18914 * 220.92144 * 20 18 17
22 22 O 1.43742 * 107.29528 * 357.97024 * 21 20 18
23 23 C 1.44385 * 106.97141 * 26.51344 * 22 21 20
24 24 C 1.39924 * 120.00377 * 89.99529 * 10 9 7
25 25 C 1.38876 * 120.06428 * 66.72627 * 24 10 9
26 26 C 1.38115 * 119.92396 * 180.02562 * 25 24 10
27 27 C 1.38281 * 120.07046 * 0.25120 * 26 25 24
28 28 C 1.38284 * 120.14473 * 359.49079 * 27 26 25
29 29 C 1.38111 * 120.06379 * 0.51208 * 28 27 26
30 30 H 0.96997 * 120.00099 * 0.02562 * 1 2 3
31 31 H 1.09002 * 109.46859 * 60.00198 * 9 7 2
32 32 H 1.09003 * 109.47146 * 300.00554 * 9 7 2
33 33 H 1.08995 * 109.47300 * 294.73517 * 13 11 10
34 34 H 1.09003 * 109.46691 * 54.73243 * 13 11 10
35 35 H 1.08998 * 109.46502 * 300.00096 * 17 15 14
36 36 H 1.08997 * 109.46916 * 59.99826 * 17 15 14
37 37 H 1.09008 * 110.48501 * 339.60202 * 20 18 17
38 38 H 1.09000 * 110.48590 * 102.23936 * 20 18 17
39 39 H 1.09000 * 109.87326 * 117.39456 * 21 20 18
40 40 H 1.09002 * 109.87455 * 238.54459 * 21 20 18
41 41 H 1.09000 * 110.61438 * 201.43980 * 23 22 21
42 42 H 1.08997 * 110.61992 * 78.44349 * 23 22 21
43 43 H 1.07997 * 120.03944 * 0.03934 * 25 24 10
44 44 H 1.07998 * 119.96297 * 179.97438 * 26 25 24
45 45 H 1.08001 * 119.92778 * 179.72246 * 27 26 25
46 46 H 1.07994 * 119.96712 * 180.23640 * 28 27 26
47 47 H 1.08004 * 120.03034 * 179.72314 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 3.1029 1.6965 -1.2125
5 1 1.2841 2.7465 -0.0006
6 1 3.1029 1.6965 1.2125
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1940 0.0010
9 6 1.2511 -2.4991 0.0017
10 7 2.2031 -3.6126 0.0027
11 6 2.6410 -4.1259 -1.1641
12 8 2.3104 -3.6151 -2.2134
13 6 3.5413 -5.3343 -1.1651
14 8 3.7709 -5.7658 -2.5324
15 6 4.5578 -6.8387 -2.7088
16 8 5.0386 -7.3992 -1.7524
17 6 4.8418 -7.3444 -4.0998
18 6 5.7570 -8.5679 -4.0207
19 1 6.6338 -8.3566 -3.4086
20 6 6.1717 -9.0401 -5.4355
21 6 6.0980 -10.5773 -5.3574
22 8 5.7286 -10.9196 -4.0111
23 6 4.9877 -9.8000 -3.4798
24 6 2.6578 -4.1433 1.2149
25 6 1.7775 -4.8118 2.0556
26 6 2.2293 -5.3341 3.2517
27 6 3.5555 -5.1873 3.6148
28 6 4.4358 -4.5268 2.7775
29 6 3.9902 -4.0022 1.5801
30 1 -0.4850 0.8400 -0.0004
31 1 0.6241 -2.5575 -0.8880
32 1 0.6247 -2.5563 0.8919
33 1 4.4933 -5.0785 -0.7000
34 1 3.0680 -6.1404 -0.6043
35 1 3.9054 -7.6222 -4.5835
36 1 5.3312 -6.5609 -4.6783
37 1 5.4745 -8.6621 -6.1834
38 1 7.1879 -8.7178 -5.6626
39 1 5.3460 -10.9481 -6.0538
40 1 7.0709 -11.0075 -5.5956
41 1 5.0017 -9.8131 -2.3899
42 1 3.9632 -9.8064 -3.8517
43 1 0.7408 -4.9235 1.7743
44 1 1.5452 -5.8537 3.9061
45 1 3.9054 -5.5927 4.5527
46 1 5.4717 -4.4171 3.0622
47 1 4.6772 -3.4826 0.9286
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000740384875.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:56:36
Heat of formation + Delta-G solvation = -134.766583 kcal
Electronic energy + Delta-G solvation = -30197.412957 eV
Core-core repulsion = 25924.596414 eV
Total energy + Delta-G solvation = -4272.816543 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.161 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-40.86293 -39.97644 -39.41273 -38.15854 -36.49240 -34.92402 -33.97636 -32.77503
-30.81890 -30.44717 -29.59016 -29.18762 -27.59287 -26.42707 -23.32860 -22.97500
-22.57625 -22.14346 -21.58261 -20.43334 -19.25470 -17.98509 -17.48791 -16.98556
-16.81734 -16.51139 -16.20053 -15.91684 -15.72131 -15.50528 -15.21644 -15.01152
-14.46754 -14.28780 -14.24756 -13.86680 -13.32303 -13.25404 -13.18736 -12.90765
-12.64686 -12.36289 -12.32783 -12.16098 -12.08120 -11.74801 -11.54276 -11.28715
-11.26547 -11.12671 -11.03872 -10.91086 -10.71551 -10.68904 -10.57945 -10.23049
-9.99440 -9.83131 -9.45760 -8.75429 -8.68440 -8.49160 -7.79280 -6.11308
-4.16029 1.47784 1.58005 2.06435 2.33601 3.04812 3.29369 3.33189
3.36412 3.58274 3.69513 3.95208 4.09035 4.35586 4.39731 4.46717
4.62723 4.69443 4.72361 4.90316 4.97638 5.08876 5.12480 5.16424
5.18533 5.22216 5.24055 5.27878 5.30426 5.35036 5.42002 5.51358
5.61200 5.66248 5.75238 5.81489 5.94268 6.19210 6.31263 6.53525
6.53710 6.67161 6.69892 6.86698 7.11671 7.23620 7.34513 7.60885
7.83349 8.10517 8.15872 8.67996 8.87422 9.48450 10.97136
Molecular weight = 347.16amu
Principal moments of inertia in cm(-1)
A = 0.011958 B = 0.002622 C = 0.002290
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2341.004825 B =10676.370474 C =12222.423271
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.894 5.894
2 C 0.063 3.937
3 Si 0.900 3.100
4 H -0.275 1.275
5 H -0.285 1.285
6 H -0.276 1.276
7 C -0.528 4.528
8 H 0.058 0.942
9 C 0.250 3.750
10 N -0.555 5.555
11 C 0.514 3.486
12 O -0.503 6.503
13 C 0.051 3.949
14 O -0.330 6.330
15 C 0.459 3.541
16 O -0.508 6.508
17 C -0.104 4.104
18 C -0.112 4.112
19 H 0.099 0.901
20 C -0.153 4.153
21 C 0.046 3.954
22 O -0.378 6.378
23 C 0.050 3.950
24 C 0.153 3.847
25 C -0.123 4.123
26 C -0.108 4.108
27 C -0.131 4.131
28 C -0.107 4.107
29 C -0.127 4.127
30 H 0.265 0.735
31 H 0.049 0.951
32 H 0.039 0.961
33 H 0.099 0.901
34 H 0.096 0.904
35 H 0.111 0.889
36 H 0.114 0.886
37 H 0.081 0.919
38 H 0.082 0.918
39 H 0.059 0.941
40 H 0.083 0.917
41 H 0.103 0.897
42 H 0.060 0.940
43 H 0.126 0.874
44 H 0.123 0.877
45 H 0.120 0.880
46 H 0.122 0.878
47 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.322 -18.399 -3.400 21.369
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.533 5.533
2 C -0.139 4.139
3 Si 0.727 3.273
4 H -0.201 1.201
5 H -0.211 1.211
6 H -0.202 1.202
7 C -0.566 4.566
8 H 0.076 0.924
9 C 0.133 3.867
10 N -0.285 5.285
11 C 0.299 3.701
12 O -0.376 6.376
13 C -0.026 4.026
14 O -0.245 6.245
15 C 0.302 3.698
16 O -0.396 6.396
17 C -0.142 4.142
18 C -0.130 4.130
19 H 0.117 0.883
20 C -0.190 4.190
21 C -0.031 4.031
22 O -0.297 6.297
23 C -0.026 4.026
24 C 0.062 3.938
25 C -0.142 4.142
26 C -0.127 4.127
27 C -0.150 4.150
28 C -0.126 4.126
29 C -0.146 4.146
30 H 0.075 0.925
31 H 0.067 0.933
32 H 0.057 0.943
33 H 0.117 0.883
34 H 0.114 0.886
35 H 0.129 0.871
36 H 0.132 0.868
37 H 0.100 0.900
38 H 0.100 0.900
39 H 0.077 0.923
40 H 0.101 0.899
41 H 0.121 0.879
42 H 0.079 0.921
43 H 0.144 0.856
44 H 0.141 0.859
45 H 0.138 0.862
46 H 0.140 0.860
47 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges 10.107 -18.297 -3.618 21.214
hybrid contribution 0.405 1.363 0.179 1.433
sum 10.512 -16.934 -3.439 20.226
Atomic orbital electron populations
1.69911 1.05977 1.27317 1.50058 1.24906 0.94911 0.99227 0.94869
0.86526 0.79541 0.82517 0.78700 1.20083 1.21081 1.20177 1.21298
0.93360 0.90350 1.51614 0.92379 1.19494 0.86858 0.81372 0.98934
1.45894 1.45877 1.34799 1.01919 1.19756 0.81569 0.84297 0.84432
1.90740 1.55965 1.60597 1.30340 1.22909 1.01382 0.97307 0.81033
1.86547 1.62669 1.44351 1.30933 1.23743 0.75446 0.77855 0.92785
1.90673 1.48945 1.56892 1.43084 1.21380 1.02574 0.98719 0.91518
1.22601 0.99337 0.94016 0.97073 0.88305 1.23014 1.03203 0.95990
0.96811 1.23154 1.00689 0.94310 0.84970 1.88895 1.73821 1.39731
1.27249 1.23723 0.94524 0.83772 1.00608 1.17789 0.92613 0.95155
0.88292 1.21312 1.00073 0.97797 0.95051 1.20990 0.95819 0.99801
0.96086 1.21094 0.93727 1.00476 0.99662 1.20980 0.99637 0.98016
0.93949 1.21369 0.95602 1.00138 0.97535 0.92524 0.93331 0.94298
0.88349 0.88615 0.87118 0.86816 0.90023 0.89968 0.92292 0.89850
0.87898 0.92136 0.85589 0.85927 0.86227 0.85980 0.85908
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.17 13.29 55.43 0.74 -25.44 16
2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16
3 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16
4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16
6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
7 C -0.53 -14.80 9.39 -34.44 -0.32 -15.12 16
8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16
9 C 0.25 6.43 5.07 -5.19 -0.03 6.41 16
10 N -0.56 -11.78 2.51 -114.73 -0.29 -12.07 16
11 C 0.51 10.73 7.62 -10.98 -0.08 10.65 16
12 O -0.50 -12.53 16.14 -14.05 -0.23 -12.76 16
13 C 0.05 0.83 4.61 36.00 0.17 1.00 16
14 O -0.33 -5.20 9.76 -45.86 -0.45 -5.65 16
15 C 0.46 5.85 7.80 36.01 0.28 6.13 16
16 O -0.51 -7.30 14.68 -18.75 -0.28 -7.58 16
17 C -0.10 -0.88 5.21 -27.88 -0.15 -1.03 16
18 C -0.11 -0.92 2.67 -88.61 -0.24 -1.16 16
19 H 0.10 0.92 7.87 -51.93 -0.41 0.51 16
20 C -0.15 -0.93 6.60 -25.20 -0.17 -1.10 16
21 C 0.05 0.33 7.70 37.73 0.29 0.62 16
22 O -0.38 -4.03 11.52 -35.23 -0.41 -4.43 16
23 C 0.05 0.48 6.66 38.21 0.25 0.73 16
24 C 0.15 2.74 4.43 -83.69 -0.37 2.37 16
25 C -0.12 -1.92 9.64 -39.39 -0.38 -2.30 16
26 C -0.11 -1.40 10.04 -39.61 -0.40 -1.80 16
27 C -0.13 -1.61 10.04 -39.55 -0.40 -2.00 16
28 C -0.11 -1.42 10.04 -39.61 -0.40 -1.81 16
29 C -0.13 -2.02 8.44 -39.40 -0.33 -2.36 16
30 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16
31 H 0.05 1.38 7.49 -51.93 -0.39 0.99 16
32 H 0.04 1.01 7.82 -51.93 -0.41 0.61 16
33 H 0.10 1.49 6.97 -51.93 -0.36 1.13 16
34 H 0.10 1.43 8.02 -51.93 -0.42 1.01 16
35 H 0.11 0.77 7.98 -51.93 -0.41 0.35 16
36 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16
37 H 0.08 0.39 7.86 -51.92 -0.41 -0.01 16
38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16
39 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16
40 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16
41 H 0.10 1.11 7.49 -51.93 -0.39 0.72 16
42 H 0.06 0.51 7.93 -51.93 -0.41 0.10 16
43 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16
44 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16
45 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16
46 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16
47 H 0.12 1.95 7.91 -52.48 -0.41 1.54 16
LS Contribution 398.41 15.07 6.00 6.00
Total: -1.00 -34.30 398.41 -9.23 -43.54
By element:
Atomic # 1 Polarization: 7.68 SS G_CDS: -6.95 Total: 0.73 kcal
Atomic # 6 Polarization: 3.29 SS G_CDS: -2.36 Total: 0.93 kcal
Atomic # 7 Polarization: -37.95 SS G_CDS: 0.45 Total: -37.51 kcal
Atomic # 8 Polarization: -29.07 SS G_CDS: -1.36 Total: -30.42 kcal
Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal
Total LS contribution 6.00 Total: 6.00 kcal
Total: -34.30 -9.23 -43.54 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000740384875.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -91.231 kcal
(2) G-P(sol) polarization free energy of solvation -34.302 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.533 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.536 kcal
(6) G-S(sol) free energy of system = (1) + (5) -134.767 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds