Wall clock time and date at job start Wed Apr 1 2020 04:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99842 * 2 1 4 4 H 1.48503 * 109.46986 * 240.00069 * 3 2 1 5 5 H 1.48499 * 109.47009 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47072 * 119.99841 * 3 2 1 7 7 C 1.37874 * 120.00199 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00160 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99836 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47213 * 180.02562 * 9 7 2 11 11 C 1.34782 * 119.99895 * 270.00059 * 10 9 7 12 12 O 1.21293 * 119.99854 * 4.43596 * 11 10 9 13 13 C 1.50698 * 120.00236 * 184.43603 * 11 10 9 14 14 O 1.45205 * 109.47182 * 174.72961 * 13 11 10 15 15 C 1.34221 * 116.99809 * 180.02562 * 14 13 11 16 16 O 1.20827 * 120.00329 * 0.02562 * 15 14 13 17 17 C 1.50706 * 119.99899 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.47177 * 180.02562 * 17 15 14 19 19 H 1.09002 * 110.80197 * 308.62594 * 18 17 15 20 20 C 1.54809 * 110.90917 * 184.99671 * 18 17 15 21 21 C 1.54100 * 104.18914 * 220.92144 * 20 18 17 22 22 O 1.43742 * 107.29528 * 357.97024 * 21 20 18 23 23 C 1.44385 * 106.97141 * 26.51344 * 22 21 20 24 24 C 1.39924 * 120.00377 * 89.99529 * 10 9 7 25 25 C 1.38876 * 120.06428 * 66.72627 * 24 10 9 26 26 C 1.38115 * 119.92396 * 180.02562 * 25 24 10 27 27 C 1.38281 * 120.07046 * 0.25120 * 26 25 24 28 28 C 1.38284 * 120.14473 * 359.49079 * 27 26 25 29 29 C 1.38111 * 120.06379 * 0.51208 * 28 27 26 30 30 H 0.96997 * 120.00099 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.46859 * 60.00198 * 9 7 2 32 32 H 1.09003 * 109.47146 * 300.00554 * 9 7 2 33 33 H 1.08995 * 109.47300 * 294.73517 * 13 11 10 34 34 H 1.09003 * 109.46691 * 54.73243 * 13 11 10 35 35 H 1.08998 * 109.46502 * 300.00096 * 17 15 14 36 36 H 1.08997 * 109.46916 * 59.99826 * 17 15 14 37 37 H 1.09008 * 110.48501 * 339.60202 * 20 18 17 38 38 H 1.09000 * 110.48590 * 102.23936 * 20 18 17 39 39 H 1.09000 * 109.87326 * 117.39456 * 21 20 18 40 40 H 1.09002 * 109.87455 * 238.54459 * 21 20 18 41 41 H 1.09000 * 110.61438 * 201.43980 * 23 22 21 42 42 H 1.08997 * 110.61992 * 78.44349 * 23 22 21 43 43 H 1.07997 * 120.03944 * 0.03934 * 25 24 10 44 44 H 1.07998 * 119.96297 * 179.97438 * 26 25 24 45 45 H 1.08001 * 119.92778 * 179.72246 * 27 26 25 46 46 H 1.07994 * 119.96712 * 180.23640 * 28 27 26 47 47 H 1.08004 * 120.03034 * 179.72314 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2031 -3.6126 0.0027 11 6 2.6410 -4.1259 -1.1641 12 8 2.3104 -3.6151 -2.2134 13 6 3.5413 -5.3343 -1.1651 14 8 3.7709 -5.7658 -2.5324 15 6 4.5578 -6.8387 -2.7088 16 8 5.0386 -7.3992 -1.7524 17 6 4.8418 -7.3444 -4.0998 18 6 5.7570 -8.5679 -4.0207 19 1 6.6338 -8.3566 -3.4086 20 6 6.1717 -9.0401 -5.4355 21 6 6.0980 -10.5773 -5.3574 22 8 5.7286 -10.9196 -4.0111 23 6 4.9877 -9.8000 -3.4798 24 6 2.6578 -4.1433 1.2149 25 6 1.7775 -4.8118 2.0556 26 6 2.2293 -5.3341 3.2517 27 6 3.5555 -5.1873 3.6148 28 6 4.4358 -4.5268 2.7775 29 6 3.9902 -4.0022 1.5801 30 1 -0.4850 0.8400 -0.0004 31 1 0.6241 -2.5575 -0.8880 32 1 0.6247 -2.5563 0.8919 33 1 4.4933 -5.0785 -0.7000 34 1 3.0680 -6.1404 -0.6043 35 1 3.9054 -7.6222 -4.5835 36 1 5.3312 -6.5609 -4.6783 37 1 5.4745 -8.6621 -6.1834 38 1 7.1879 -8.7178 -5.6626 39 1 5.3460 -10.9481 -6.0538 40 1 7.0709 -11.0075 -5.5956 41 1 5.0017 -9.8131 -2.3899 42 1 3.9632 -9.8064 -3.8517 43 1 0.7408 -4.9235 1.7743 44 1 1.5452 -5.8537 3.9061 45 1 3.9054 -5.5927 4.5527 46 1 5.4717 -4.4171 3.0622 47 1 4.6772 -3.4826 0.9286 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000740384875.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:36 Heat of formation + Delta-G solvation = -134.766583 kcal Electronic energy + Delta-G solvation = -30197.412957 eV Core-core repulsion = 25924.596414 eV Total energy + Delta-G solvation = -4272.816543 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.86293 -39.97644 -39.41273 -38.15854 -36.49240 -34.92402 -33.97636 -32.77503 -30.81890 -30.44717 -29.59016 -29.18762 -27.59287 -26.42707 -23.32860 -22.97500 -22.57625 -22.14346 -21.58261 -20.43334 -19.25470 -17.98509 -17.48791 -16.98556 -16.81734 -16.51139 -16.20053 -15.91684 -15.72131 -15.50528 -15.21644 -15.01152 -14.46754 -14.28780 -14.24756 -13.86680 -13.32303 -13.25404 -13.18736 -12.90765 -12.64686 -12.36289 -12.32783 -12.16098 -12.08120 -11.74801 -11.54276 -11.28715 -11.26547 -11.12671 -11.03872 -10.91086 -10.71551 -10.68904 -10.57945 -10.23049 -9.99440 -9.83131 -9.45760 -8.75429 -8.68440 -8.49160 -7.79280 -6.11308 -4.16029 1.47784 1.58005 2.06435 2.33601 3.04812 3.29369 3.33189 3.36412 3.58274 3.69513 3.95208 4.09035 4.35586 4.39731 4.46717 4.62723 4.69443 4.72361 4.90316 4.97638 5.08876 5.12480 5.16424 5.18533 5.22216 5.24055 5.27878 5.30426 5.35036 5.42002 5.51358 5.61200 5.66248 5.75238 5.81489 5.94268 6.19210 6.31263 6.53525 6.53710 6.67161 6.69892 6.86698 7.11671 7.23620 7.34513 7.60885 7.83349 8.10517 8.15872 8.67996 8.87422 9.48450 10.97136 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011958 B = 0.002622 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.004825 B =10676.370474 C =12222.423271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.250 3.750 10 N -0.555 5.555 11 C 0.514 3.486 12 O -0.503 6.503 13 C 0.051 3.949 14 O -0.330 6.330 15 C 0.459 3.541 16 O -0.508 6.508 17 C -0.104 4.104 18 C -0.112 4.112 19 H 0.099 0.901 20 C -0.153 4.153 21 C 0.046 3.954 22 O -0.378 6.378 23 C 0.050 3.950 24 C 0.153 3.847 25 C -0.123 4.123 26 C -0.108 4.108 27 C -0.131 4.131 28 C -0.107 4.107 29 C -0.127 4.127 30 H 0.265 0.735 31 H 0.049 0.951 32 H 0.039 0.961 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.083 0.917 41 H 0.103 0.897 42 H 0.060 0.940 43 H 0.126 0.874 44 H 0.123 0.877 45 H 0.120 0.880 46 H 0.122 0.878 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.322 -18.399 -3.400 21.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.076 0.924 9 C 0.133 3.867 10 N -0.285 5.285 11 C 0.299 3.701 12 O -0.376 6.376 13 C -0.026 4.026 14 O -0.245 6.245 15 C 0.302 3.698 16 O -0.396 6.396 17 C -0.142 4.142 18 C -0.130 4.130 19 H 0.117 0.883 20 C -0.190 4.190 21 C -0.031 4.031 22 O -0.297 6.297 23 C -0.026 4.026 24 C 0.062 3.938 25 C -0.142 4.142 26 C -0.127 4.127 27 C -0.150 4.150 28 C -0.126 4.126 29 C -0.146 4.146 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.121 0.879 42 H 0.079 0.921 43 H 0.144 0.856 44 H 0.141 0.859 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.107 -18.297 -3.618 21.214 hybrid contribution 0.405 1.363 0.179 1.433 sum 10.512 -16.934 -3.439 20.226 Atomic orbital electron populations 1.69911 1.05977 1.27317 1.50058 1.24906 0.94911 0.99227 0.94869 0.86526 0.79541 0.82517 0.78700 1.20083 1.21081 1.20177 1.21298 0.93360 0.90350 1.51614 0.92379 1.19494 0.86858 0.81372 0.98934 1.45894 1.45877 1.34799 1.01919 1.19756 0.81569 0.84297 0.84432 1.90740 1.55965 1.60597 1.30340 1.22909 1.01382 0.97307 0.81033 1.86547 1.62669 1.44351 1.30933 1.23743 0.75446 0.77855 0.92785 1.90673 1.48945 1.56892 1.43084 1.21380 1.02574 0.98719 0.91518 1.22601 0.99337 0.94016 0.97073 0.88305 1.23014 1.03203 0.95990 0.96811 1.23154 1.00689 0.94310 0.84970 1.88895 1.73821 1.39731 1.27249 1.23723 0.94524 0.83772 1.00608 1.17789 0.92613 0.95155 0.88292 1.21312 1.00073 0.97797 0.95051 1.20990 0.95819 0.99801 0.96086 1.21094 0.93727 1.00476 0.99662 1.20980 0.99637 0.98016 0.93949 1.21369 0.95602 1.00138 0.97535 0.92524 0.93331 0.94298 0.88349 0.88615 0.87118 0.86816 0.90023 0.89968 0.92292 0.89850 0.87898 0.92136 0.85589 0.85927 0.86227 0.85980 0.85908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.17 13.29 55.43 0.74 -25.44 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.53 -14.80 9.39 -34.44 -0.32 -15.12 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.25 6.43 5.07 -5.19 -0.03 6.41 16 10 N -0.56 -11.78 2.51 -114.73 -0.29 -12.07 16 11 C 0.51 10.73 7.62 -10.98 -0.08 10.65 16 12 O -0.50 -12.53 16.14 -14.05 -0.23 -12.76 16 13 C 0.05 0.83 4.61 36.00 0.17 1.00 16 14 O -0.33 -5.20 9.76 -45.86 -0.45 -5.65 16 15 C 0.46 5.85 7.80 36.01 0.28 6.13 16 16 O -0.51 -7.30 14.68 -18.75 -0.28 -7.58 16 17 C -0.10 -0.88 5.21 -27.88 -0.15 -1.03 16 18 C -0.11 -0.92 2.67 -88.61 -0.24 -1.16 16 19 H 0.10 0.92 7.87 -51.93 -0.41 0.51 16 20 C -0.15 -0.93 6.60 -25.20 -0.17 -1.10 16 21 C 0.05 0.33 7.70 37.73 0.29 0.62 16 22 O -0.38 -4.03 11.52 -35.23 -0.41 -4.43 16 23 C 0.05 0.48 6.66 38.21 0.25 0.73 16 24 C 0.15 2.74 4.43 -83.69 -0.37 2.37 16 25 C -0.12 -1.92 9.64 -39.39 -0.38 -2.30 16 26 C -0.11 -1.40 10.04 -39.61 -0.40 -1.80 16 27 C -0.13 -1.61 10.04 -39.55 -0.40 -2.00 16 28 C -0.11 -1.42 10.04 -39.61 -0.40 -1.81 16 29 C -0.13 -2.02 8.44 -39.40 -0.33 -2.36 16 30 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.05 1.38 7.49 -51.93 -0.39 0.99 16 32 H 0.04 1.01 7.82 -51.93 -0.41 0.61 16 33 H 0.10 1.49 6.97 -51.93 -0.36 1.13 16 34 H 0.10 1.43 8.02 -51.93 -0.42 1.01 16 35 H 0.11 0.77 7.98 -51.93 -0.41 0.35 16 36 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.39 7.86 -51.92 -0.41 -0.01 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.10 1.11 7.49 -51.93 -0.39 0.72 16 42 H 0.06 0.51 7.93 -51.93 -0.41 0.10 16 43 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 44 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 45 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 46 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 47 H 0.12 1.95 7.91 -52.48 -0.41 1.54 16 LS Contribution 398.41 15.07 6.00 6.00 Total: -1.00 -34.30 398.41 -9.23 -43.54 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.95 Total: 0.73 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -2.36 Total: 0.93 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.45 Total: -37.51 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -1.36 Total: -30.42 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.30 -9.23 -43.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740384875.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.231 kcal (2) G-P(sol) polarization free energy of solvation -34.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds