Wall clock time and date at job start Wed Apr 1 2020 04:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99842 * 2 1 4 4 H 1.48503 * 109.46986 * 240.00069 * 3 2 1 5 5 H 1.48499 * 109.47009 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47072 * 119.99841 * 3 2 1 7 7 C 1.37874 * 120.00199 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00160 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99836 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47213 * 180.02562 * 9 7 2 11 11 C 1.34782 * 119.99895 * 270.00059 * 10 9 7 12 12 O 1.21293 * 119.99854 * 4.43596 * 11 10 9 13 13 C 1.50698 * 120.00236 * 184.43603 * 11 10 9 14 14 O 1.45205 * 109.47182 * 174.72961 * 13 11 10 15 15 C 1.34221 * 116.99809 * 180.02562 * 14 13 11 16 16 O 1.20827 * 120.00329 * 0.02562 * 15 14 13 17 17 C 1.50706 * 119.99899 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.47177 * 180.02562 * 17 15 14 19 19 H 1.09002 * 110.80197 * 308.62594 * 18 17 15 20 20 C 1.54809 * 110.90917 * 184.99671 * 18 17 15 21 21 C 1.54100 * 104.18914 * 220.92144 * 20 18 17 22 22 O 1.43742 * 107.29528 * 357.97024 * 21 20 18 23 23 C 1.44385 * 106.97141 * 26.51344 * 22 21 20 24 24 C 1.39924 * 120.00377 * 89.99529 * 10 9 7 25 25 C 1.38876 * 120.06428 * 66.72627 * 24 10 9 26 26 C 1.38115 * 119.92396 * 180.02562 * 25 24 10 27 27 C 1.38281 * 120.07046 * 0.25120 * 26 25 24 28 28 C 1.38284 * 120.14473 * 359.49079 * 27 26 25 29 29 C 1.38111 * 120.06379 * 0.51208 * 28 27 26 30 30 H 0.96997 * 120.00099 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.46859 * 60.00198 * 9 7 2 32 32 H 1.09003 * 109.47146 * 300.00554 * 9 7 2 33 33 H 1.08995 * 109.47300 * 294.73517 * 13 11 10 34 34 H 1.09003 * 109.46691 * 54.73243 * 13 11 10 35 35 H 1.08998 * 109.46502 * 300.00096 * 17 15 14 36 36 H 1.08997 * 109.46916 * 59.99826 * 17 15 14 37 37 H 1.09008 * 110.48501 * 339.60202 * 20 18 17 38 38 H 1.09000 * 110.48590 * 102.23936 * 20 18 17 39 39 H 1.09000 * 109.87326 * 117.39456 * 21 20 18 40 40 H 1.09002 * 109.87455 * 238.54459 * 21 20 18 41 41 H 1.09000 * 110.61438 * 201.43980 * 23 22 21 42 42 H 1.08997 * 110.61992 * 78.44349 * 23 22 21 43 43 H 1.07997 * 120.03944 * 0.03934 * 25 24 10 44 44 H 1.07998 * 119.96297 * 179.97438 * 26 25 24 45 45 H 1.08001 * 119.92778 * 179.72246 * 27 26 25 46 46 H 1.07994 * 119.96712 * 180.23640 * 28 27 26 47 47 H 1.08004 * 120.03034 * 179.72314 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2031 -3.6126 0.0027 11 6 2.6410 -4.1259 -1.1641 12 8 2.3104 -3.6151 -2.2134 13 6 3.5413 -5.3343 -1.1651 14 8 3.7709 -5.7658 -2.5324 15 6 4.5578 -6.8387 -2.7088 16 8 5.0386 -7.3992 -1.7524 17 6 4.8418 -7.3444 -4.0998 18 6 5.7570 -8.5679 -4.0207 19 1 6.6338 -8.3566 -3.4086 20 6 6.1717 -9.0401 -5.4355 21 6 6.0980 -10.5773 -5.3574 22 8 5.7286 -10.9196 -4.0111 23 6 4.9877 -9.8000 -3.4798 24 6 2.6578 -4.1433 1.2149 25 6 1.7775 -4.8118 2.0556 26 6 2.2293 -5.3341 3.2517 27 6 3.5555 -5.1873 3.6148 28 6 4.4358 -4.5268 2.7775 29 6 3.9902 -4.0022 1.5801 30 1 -0.4850 0.8400 -0.0004 31 1 0.6241 -2.5575 -0.8880 32 1 0.6247 -2.5563 0.8919 33 1 4.4933 -5.0785 -0.7000 34 1 3.0680 -6.1404 -0.6043 35 1 3.9054 -7.6222 -4.5835 36 1 5.3312 -6.5609 -4.6783 37 1 5.4745 -8.6621 -6.1834 38 1 7.1879 -8.7178 -5.6626 39 1 5.3460 -10.9481 -6.0538 40 1 7.0709 -11.0075 -5.5956 41 1 5.0017 -9.8131 -2.3899 42 1 3.9632 -9.8064 -3.8517 43 1 0.7408 -4.9235 1.7743 44 1 1.5452 -5.8537 3.9061 45 1 3.9054 -5.5927 4.5527 46 1 5.4717 -4.4171 3.0622 47 1 4.6772 -3.4826 0.9286 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000740384875.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:35 Heat of formation + Delta-G solvation = -154.392612 kcal Electronic energy + Delta-G solvation = -30198.264005 eV Core-core repulsion = 25924.596414 eV Total energy + Delta-G solvation = -4273.667592 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.01218 -41.28318 -40.21939 -39.51898 -37.67323 -36.57319 -34.85055 -34.70380 -31.98193 -31.34349 -30.93153 -30.38600 -28.84208 -27.83842 -25.02880 -23.98205 -23.68760 -23.37254 -22.47782 -21.21300 -20.70889 -19.08547 -18.85489 -18.64231 -18.02010 -17.78652 -17.30995 -17.14558 -16.85086 -16.58268 -16.51156 -16.05906 -15.97115 -15.50060 -15.41489 -14.84560 -14.64921 -14.47513 -14.33017 -14.05375 -13.96337 -13.71090 -13.60277 -13.42158 -13.10995 -13.05493 -12.70587 -12.67270 -12.47865 -12.30841 -12.23308 -12.15259 -12.02927 -11.97100 -11.78535 -11.65976 -11.50117 -11.09856 -10.68538 -10.65193 -10.21907 -9.87133 -9.31604 -8.27286 -6.41675 0.29084 0.46138 1.05593 1.16590 1.33953 1.38446 1.42334 1.47930 2.21610 2.37757 2.81355 2.98012 3.03083 3.28824 3.38023 3.66947 3.77486 3.83921 3.87328 3.95217 4.05174 4.08259 4.20457 4.25272 4.28970 4.38763 4.52464 4.55941 4.60068 4.63867 4.68228 4.81117 4.87531 4.89277 4.95450 5.04510 5.10151 5.11559 5.20285 5.28698 5.34069 5.49667 5.59010 5.61329 5.69364 5.90630 5.96228 6.01290 6.46692 6.59867 6.64092 7.06501 7.28789 8.80198 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011958 B = 0.002622 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.004825 B =10676.370474 C =12222.423271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.011 3.989 3 Si 0.967 3.033 4 H -0.275 1.275 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.052 0.948 9 C 0.267 3.733 10 N -0.555 5.555 11 C 0.508 3.492 12 O -0.557 6.557 13 C 0.069 3.931 14 O -0.349 6.349 15 C 0.457 3.543 16 O -0.526 6.526 17 C -0.097 4.097 18 C -0.108 4.108 19 H 0.085 0.915 20 C -0.144 4.144 21 C 0.037 3.963 22 O -0.406 6.406 23 C 0.047 3.953 24 C 0.115 3.885 25 C -0.137 4.137 26 C -0.103 4.103 27 C -0.118 4.118 28 C -0.103 4.103 29 C -0.139 4.139 30 H 0.269 0.731 31 H 0.009 0.991 32 H 0.028 0.972 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.119 0.881 44 H 0.155 0.845 45 H 0.160 0.840 46 H 0.153 0.847 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.351 -19.221 -2.463 22.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.188 4.188 3 Si 0.791 3.209 4 H -0.201 1.201 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.070 0.930 9 C 0.148 3.852 10 N -0.283 5.283 11 C 0.296 3.704 12 O -0.434 6.434 13 C -0.008 4.008 14 O -0.264 6.264 15 C 0.302 3.698 16 O -0.415 6.415 17 C -0.134 4.134 18 C -0.126 4.126 19 H 0.103 0.897 20 C -0.181 4.181 21 C -0.039 4.039 22 O -0.325 6.325 23 C -0.030 4.030 24 C 0.024 3.976 25 C -0.156 4.156 26 C -0.121 4.121 27 C -0.136 4.136 28 C -0.121 4.121 29 C -0.159 4.159 30 H 0.078 0.922 31 H 0.027 0.973 32 H 0.046 0.954 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.149 0.851 36 H 0.154 0.846 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.088 0.912 40 H 0.111 0.889 41 H 0.101 0.899 42 H 0.088 0.912 43 H 0.137 0.863 44 H 0.173 0.827 45 H 0.178 0.822 46 H 0.171 0.829 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 12.163 -19.161 -2.645 22.850 hybrid contribution -0.213 1.491 -0.027 1.506 sum 11.950 -17.671 -2.672 21.499 Atomic orbital electron populations 1.70026 1.07441 1.28412 1.50572 1.25816 0.95845 1.02916 0.94238 0.85478 0.78393 0.78060 0.78985 1.20068 1.20025 1.18759 1.21547 0.93178 0.91667 1.51838 0.93015 1.18924 0.87237 0.82724 0.96325 1.45681 1.44992 1.33827 1.03827 1.20530 0.81329 0.85060 0.83482 1.90692 1.58223 1.62475 1.32059 1.22612 1.00719 0.95430 0.82074 1.86568 1.63774 1.45807 1.30290 1.24637 0.74249 0.76607 0.94348 1.90663 1.49530 1.57152 1.44142 1.21558 1.03826 0.99169 0.88855 1.22536 0.98501 0.93246 0.98361 0.89656 1.23009 1.04515 0.94988 0.95585 1.23387 1.01603 0.95303 0.83619 1.88861 1.74129 1.40449 1.29085 1.23724 0.95264 0.84358 0.99632 1.18056 0.94095 0.97667 0.87747 1.21416 0.99615 0.98501 0.96104 1.21374 0.97010 0.98734 0.94970 1.21596 0.92943 0.98497 1.00519 1.21357 1.01415 0.96824 0.92542 1.21416 0.94593 1.01007 0.98886 0.92203 0.97313 0.95400 0.87100 0.87163 0.85066 0.84645 0.88082 0.88660 0.91157 0.88872 0.89902 0.91160 0.86305 0.82736 0.82207 0.82923 0.86738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.79 13.29 21.45 0.28 -55.50 16 2 C 0.01 0.66 5.46 84.65 0.46 1.12 16 3 Si 0.97 45.10 29.54 68.60 2.03 47.12 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.54 -31.76 9.39 25.60 0.24 -31.52 16 8 H 0.05 3.01 7.81 -2.91 -0.02 2.98 16 9 C 0.27 14.64 5.07 85.64 0.43 15.08 16 10 N -0.55 -24.91 2.51 -635.29 -1.59 -26.50 16 11 C 0.51 22.44 7.62 87.66 0.67 23.10 16 12 O -0.56 -29.59 16.14 15.67 0.25 -29.34 16 13 C 0.07 2.30 4.61 71.24 0.33 2.63 16 14 O -0.35 -11.11 9.76 -44.99 -0.44 -11.55 16 15 C 0.46 11.42 7.80 71.24 0.56 11.97 16 16 O -0.53 -14.98 14.68 21.96 0.32 -14.65 16 17 C -0.10 -1.47 5.21 29.85 0.16 -1.32 16 18 C -0.11 -1.62 2.67 -9.49 -0.03 -1.65 16 19 H 0.09 1.53 7.87 -2.39 -0.02 1.51 16 20 C -0.14 -1.39 6.60 31.58 0.21 -1.18 16 21 C 0.04 0.47 7.70 72.35 0.56 1.03 16 22 O -0.41 -8.37 11.52 -148.98 -1.72 -10.09 16 23 C 0.05 0.87 6.66 72.66 0.48 1.35 16 24 C 0.11 4.19 4.43 38.15 0.17 4.36 16 25 C -0.14 -4.28 9.64 22.39 0.22 -4.07 16 26 C -0.10 -2.38 10.04 22.25 0.22 -2.16 16 27 C -0.12 -2.41 10.04 22.29 0.22 -2.18 16 28 C -0.10 -2.42 10.04 22.25 0.22 -2.20 16 29 C -0.14 -4.39 8.44 22.39 0.19 -4.20 16 30 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 31 H 0.01 0.54 7.49 -2.39 -0.02 0.52 16 32 H 0.03 1.56 7.82 -2.39 -0.02 1.54 16 33 H 0.11 3.41 6.97 -2.39 -0.02 3.39 16 34 H 0.11 3.34 8.02 -2.39 -0.02 3.32 16 35 H 0.13 1.51 7.98 -2.39 -0.02 1.49 16 36 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.10 0.62 7.86 -2.38 -0.02 0.60 16 38 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.08 1.83 7.49 -2.39 -0.02 1.81 16 42 H 0.07 1.13 7.93 -2.39 -0.02 1.11 16 43 H 0.12 3.76 8.06 -2.91 -0.02 3.74 16 44 H 0.15 2.58 8.06 -2.91 -0.02 2.55 16 45 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 46 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 47 H 0.11 3.69 7.91 -2.91 -0.02 3.67 16 Total: -1.00 -79.17 398.41 5.42 -73.76 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.97 Total: 16.59 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 5.31 Total: 10.17 kcal Atomic # 7 Polarization: -80.70 SS G_CDS: -1.31 Total: -82.01 kcal Atomic # 8 Polarization: -64.05 SS G_CDS: -1.58 Total: -65.63 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -79.17 5.42 -73.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740384875.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.636 kcal (2) G-P(sol) polarization free energy of solvation -79.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds