Wall clock time and date at job start Wed Apr 1 2020 04:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00088 * 2 1 4 4 H 1.48502 * 109.46843 * 240.00175 * 3 2 1 5 5 H 1.48497 * 109.47190 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47311 * 120.00466 * 3 2 1 7 7 C 1.37880 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99905 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99988 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47489 * 180.02562 * 9 7 2 11 11 C 1.34779 * 119.99723 * 90.00183 * 10 9 7 12 12 O 1.21297 * 119.99813 * 5.22043 * 11 10 9 13 13 C 1.50699 * 120.00135 * 185.22241 * 11 10 9 14 14 O 1.45198 * 109.47316 * 185.12272 * 13 11 10 15 15 C 1.34229 * 117.00024 * 179.97438 * 14 13 11 16 16 O 1.20822 * 119.99997 * 0.02562 * 15 14 13 17 17 C 1.50705 * 119.99834 * 180.02562 * 15 14 13 18 18 C 1.53000 * 109.46531 * 179.97438 * 17 15 14 19 19 H 1.08997 * 111.02244 * 50.78520 * 18 17 15 20 20 C 1.55305 * 111.12016 * 174.99940 * 18 17 15 21 21 C 1.54386 * 102.43712 * 152.15263 * 20 18 17 22 22 O 1.43236 * 107.58811 * 338.54641 * 21 20 18 23 23 C 1.43646 * 109.97108 * 358.28306 * 22 21 20 24 24 C 1.39922 * 120.00343 * 270.00797 * 10 9 7 25 25 C 1.38868 * 120.07151 * 112.46656 * 24 10 9 26 26 C 1.38118 * 119.92479 * 179.78667 * 25 24 10 27 27 C 1.38275 * 120.06997 * 0.49638 * 26 25 24 28 28 C 1.38278 * 120.14531 * 359.73394 * 27 26 25 29 29 C 1.38114 * 120.07084 * 0.02928 * 28 27 26 30 30 H 0.96999 * 120.00042 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.47221 * 60.00277 * 9 7 2 32 32 H 1.09004 * 109.47351 * 300.00456 * 9 7 2 33 33 H 1.09008 * 109.46609 * 65.12486 * 13 11 10 34 34 H 1.09000 * 109.47084 * 305.12861 * 13 11 10 35 35 H 1.09001 * 109.46908 * 60.00696 * 17 15 14 36 36 H 1.08998 * 109.47099 * 300.00363 * 17 15 14 37 37 H 1.09008 * 110.84902 * 33.86385 * 20 18 17 38 38 H 1.08994 * 110.85280 * 270.44932 * 20 18 17 39 39 H 1.09001 * 109.82812 * 98.05625 * 21 20 18 40 40 H 1.08996 * 109.83275 * 218.93926 * 21 20 18 41 41 H 1.09004 * 110.30835 * 143.34597 * 23 22 21 42 42 H 1.09000 * 110.31021 * 265.41532 * 23 22 21 43 43 H 1.07998 * 120.03703 * 0.03358 * 25 24 10 44 44 H 1.07998 * 119.95935 * 180.22986 * 26 25 24 45 45 H 1.08006 * 119.92990 * 179.72123 * 27 26 25 46 46 H 1.08000 * 119.96525 * 180.02562 * 28 27 26 47 47 H 1.07997 * 120.03479 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.6408 -4.1249 1.1667 12 8 2.1764 -3.7289 2.2150 13 6 3.7072 -5.1897 1.1695 14 8 3.9178 -5.6602 2.5269 15 6 4.8422 -6.6173 2.7036 16 8 5.4554 -7.0473 1.7555 17 6 5.1152 -7.1555 4.0845 18 6 6.2033 -8.2283 4.0077 19 1 7.0717 -7.8658 3.4577 20 6 6.6043 -8.7212 5.4249 21 6 7.0785 -10.1650 5.1529 22 8 6.4965 -10.5855 3.9135 23 6 5.6565 -9.5455 3.3881 24 6 2.6577 -4.1444 -1.2122 25 6 3.9864 -3.9896 -1.5850 26 6 4.4331 -4.5195 -2.7797 27 6 3.5565 -5.1947 -3.6090 28 6 2.2317 -5.3465 -3.2429 29 6 1.7798 -4.8232 -2.0473 30 1 -0.4850 0.8400 0.0004 31 1 0.6240 -2.5567 -0.8903 32 1 0.6246 -2.5571 0.8897 33 1 4.6368 -4.7738 0.7808 34 1 3.3910 -6.0223 0.5412 35 1 4.2030 -7.5923 4.4911 36 1 5.4492 -6.3442 4.7312 37 1 5.7448 -8.7150 6.0954 38 1 7.4151 -8.1165 5.8309 39 1 8.1656 -10.1892 5.0780 40 1 6.7489 -10.8205 5.9590 41 1 5.7315 -9.5114 2.3012 42 1 4.6216 -9.7061 3.6904 43 1 4.6706 -3.4588 -0.9397 44 1 5.4672 -4.4026 -3.0685 45 1 3.9072 -5.6043 -4.5448 46 1 1.5496 -5.8747 -3.8926 47 1 0.7449 -4.9417 -1.7621 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000740384877.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:40 Heat of formation + Delta-G solvation = -135.121079 kcal Electronic energy + Delta-G solvation = -30203.343034 eV Core-core repulsion = 25930.511119 eV Total energy + Delta-G solvation = -4272.831915 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.85480 -39.97621 -39.40932 -38.16253 -36.49414 -34.93089 -33.98542 -32.78930 -30.84300 -30.48473 -29.60166 -29.17930 -27.63825 -26.46319 -23.24729 -22.83532 -22.56358 -22.15941 -21.71182 -20.47117 -19.25974 -17.96602 -17.50821 -17.11593 -16.78768 -16.50133 -16.20293 -15.94678 -15.83202 -15.41667 -15.19184 -14.95511 -14.38522 -14.30634 -14.18931 -13.84791 -13.48362 -13.31531 -13.21965 -12.85826 -12.67620 -12.39008 -12.31743 -12.16514 -12.10845 -11.78058 -11.53927 -11.28986 -11.23255 -11.15955 -11.12242 -10.91978 -10.70738 -10.69245 -10.58815 -10.24561 -9.84234 -9.82613 -9.48562 -8.75580 -8.66528 -8.50088 -7.80661 -6.12678 -4.17961 1.47982 1.57962 2.06392 2.33562 3.03993 3.28170 3.32160 3.35102 3.53318 3.67606 3.94913 4.00450 4.33603 4.38159 4.46500 4.59548 4.71660 4.75417 4.86584 4.97081 5.07379 5.12427 5.16693 5.18179 5.22372 5.22646 5.26776 5.31248 5.34715 5.41108 5.49528 5.61196 5.66987 5.75282 5.82551 5.94174 6.19259 6.31214 6.53631 6.66860 6.67091 6.70494 6.86610 7.11715 7.24067 7.34720 7.60737 7.81972 8.09259 8.15485 8.66662 8.85976 9.46743 10.95681 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011760 B = 0.002641 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.287431 B =10597.989569 C =12124.950839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.064 3.936 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.531 4.531 8 H 0.058 0.942 9 C 0.249 3.751 10 N -0.555 5.555 11 C 0.516 3.484 12 O -0.506 6.506 13 C 0.051 3.949 14 O -0.330 6.330 15 C 0.459 3.541 16 O -0.508 6.508 17 C -0.103 4.103 18 C -0.113 4.113 19 H 0.100 0.900 20 C -0.152 4.152 21 C 0.051 3.949 22 O -0.384 6.384 23 C 0.055 3.945 24 C 0.153 3.847 25 C -0.127 4.127 26 C -0.107 4.107 27 C -0.131 4.131 28 C -0.109 4.109 29 C -0.122 4.122 30 H 0.265 0.735 31 H 0.039 0.961 32 H 0.051 0.949 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.095 0.905 42 H 0.061 0.939 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.364 -17.657 3.285 21.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.570 4.570 8 H 0.076 0.924 9 C 0.132 3.868 10 N -0.285 5.285 11 C 0.302 3.698 12 O -0.380 6.380 13 C -0.026 4.026 14 O -0.245 6.245 15 C 0.302 3.698 16 O -0.396 6.396 17 C -0.140 4.140 18 C -0.131 4.131 19 H 0.118 0.882 20 C -0.190 4.190 21 C -0.026 4.026 22 O -0.304 6.304 23 C -0.022 4.022 24 C 0.061 3.939 25 C -0.146 4.146 26 C -0.126 4.126 27 C -0.150 4.150 28 C -0.127 4.127 29 C -0.142 4.142 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.113 0.887 42 H 0.079 0.921 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.098 -17.582 3.513 21.086 hybrid contribution 0.444 1.392 -0.200 1.475 sum 11.542 -16.190 3.313 20.157 Atomic orbital electron populations 1.69910 1.05990 1.27350 1.49847 1.24905 0.94911 0.99227 0.94816 0.86525 0.79545 0.82507 0.78703 1.20158 1.21052 1.20080 1.21309 0.93347 0.90383 1.51921 0.92389 1.19504 0.87027 0.81148 0.99123 1.45877 1.45924 1.34757 1.01917 1.19736 0.83049 0.82634 0.84358 1.90730 1.56609 1.60329 1.30334 1.22943 1.00307 0.98067 0.81328 1.86545 1.54818 1.51405 1.31740 1.23727 0.76720 0.76923 0.92455 1.90673 1.48073 1.57643 1.43191 1.21306 1.01185 0.99731 0.91814 1.22816 0.98709 0.94971 0.96637 0.88156 1.23192 1.02598 0.96448 0.96751 1.23100 0.98240 0.94357 0.86871 1.88416 1.64465 1.40138 1.37368 1.23625 0.93826 0.84754 0.99950 1.17794 0.92665 0.95145 0.88301 1.21380 0.95678 1.00094 0.97492 1.20983 0.99648 0.97916 0.94028 1.21093 0.93744 1.00419 0.99703 1.20989 0.95822 0.99834 0.96068 1.21305 1.00086 0.97749 0.95019 0.92489 0.94311 0.93094 0.88253 0.88670 0.87059 0.86728 0.89963 0.89534 0.91244 0.91357 0.88707 0.92130 0.85893 0.85972 0.86223 0.85919 0.85591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 3 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.53 -14.81 9.39 -34.44 -0.32 -15.14 16 8 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 9 C 0.25 6.40 5.15 -5.20 -0.03 6.38 16 10 N -0.56 -11.80 2.51 -114.74 -0.29 -12.09 16 11 C 0.52 10.81 7.65 -10.98 -0.08 10.73 16 12 O -0.51 -12.57 16.06 -14.06 -0.23 -12.80 16 13 C 0.05 0.83 4.46 36.01 0.16 1.00 16 14 O -0.33 -5.22 9.76 -45.89 -0.45 -5.67 16 15 C 0.46 5.87 7.82 36.01 0.28 6.15 16 16 O -0.51 -7.32 14.81 -18.75 -0.28 -7.60 16 17 C -0.10 -0.87 5.35 -27.88 -0.15 -1.02 16 18 C -0.11 -0.92 2.63 -88.07 -0.23 -1.15 16 19 H 0.10 0.92 7.86 -51.93 -0.41 0.51 16 20 C -0.15 -0.92 6.48 -24.78 -0.16 -1.08 16 21 C 0.05 0.37 7.80 37.88 0.30 0.67 16 22 O -0.38 -4.12 11.36 -35.23 -0.40 -4.52 16 23 C 0.05 0.53 6.82 38.49 0.26 0.79 16 24 C 0.15 2.73 4.43 -83.70 -0.37 2.36 16 25 C -0.13 -2.02 8.45 -39.39 -0.33 -2.35 16 26 C -0.11 -1.41 10.04 -39.61 -0.40 -1.81 16 27 C -0.13 -1.61 10.04 -39.55 -0.40 -2.00 16 28 C -0.11 -1.41 10.04 -39.61 -0.40 -1.81 16 29 C -0.12 -1.92 9.66 -39.39 -0.38 -2.30 16 30 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.04 1.01 7.84 -51.93 -0.41 0.61 16 32 H 0.05 1.45 7.36 -51.93 -0.38 1.07 16 33 H 0.10 1.52 6.88 -51.92 -0.36 1.16 16 34 H 0.10 1.43 7.86 -51.93 -0.41 1.02 16 35 H 0.11 0.77 7.96 -51.93 -0.41 0.36 16 36 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.41 8.03 -51.92 -0.42 0.00 16 38 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.09 1.03 7.60 -51.93 -0.39 0.63 16 42 H 0.06 0.53 7.91 -51.93 -0.41 0.12 16 43 H 0.12 1.93 7.55 -52.49 -0.40 1.54 16 44 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 45 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 46 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 47 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 398.08 15.07 6.00 6.00 Total: -1.00 -34.19 398.08 -9.20 -43.39 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -6.92 Total: 0.91 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -2.35 Total: 1.12 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.45 Total: -37.42 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -1.35 Total: -30.59 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.19 -9.20 -43.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740384877.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.731 kcal (2) G-P(sol) polarization free energy of solvation -34.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds