Wall clock time and date at job start Wed Apr 1 2020 04:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00088 * 2 1 4 4 H 1.48502 * 109.46843 * 240.00175 * 3 2 1 5 5 H 1.48497 * 109.47190 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47311 * 120.00466 * 3 2 1 7 7 C 1.37880 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99905 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99988 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47489 * 180.02562 * 9 7 2 11 11 C 1.34779 * 119.99723 * 90.00183 * 10 9 7 12 12 O 1.21297 * 119.99813 * 5.22043 * 11 10 9 13 13 C 1.50699 * 120.00135 * 185.22241 * 11 10 9 14 14 O 1.45198 * 109.47316 * 185.12272 * 13 11 10 15 15 C 1.34229 * 117.00024 * 179.97438 * 14 13 11 16 16 O 1.20822 * 119.99997 * 0.02562 * 15 14 13 17 17 C 1.50705 * 119.99834 * 180.02562 * 15 14 13 18 18 C 1.53000 * 109.46531 * 179.97438 * 17 15 14 19 19 H 1.08997 * 111.02244 * 50.78520 * 18 17 15 20 20 C 1.55305 * 111.12016 * 174.99940 * 18 17 15 21 21 C 1.54386 * 102.43712 * 152.15263 * 20 18 17 22 22 O 1.43236 * 107.58811 * 338.54641 * 21 20 18 23 23 C 1.43646 * 109.97108 * 358.28306 * 22 21 20 24 24 C 1.39922 * 120.00343 * 270.00797 * 10 9 7 25 25 C 1.38868 * 120.07151 * 112.46656 * 24 10 9 26 26 C 1.38118 * 119.92479 * 179.78667 * 25 24 10 27 27 C 1.38275 * 120.06997 * 0.49638 * 26 25 24 28 28 C 1.38278 * 120.14531 * 359.73394 * 27 26 25 29 29 C 1.38114 * 120.07084 * 0.02928 * 28 27 26 30 30 H 0.96999 * 120.00042 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.47221 * 60.00277 * 9 7 2 32 32 H 1.09004 * 109.47351 * 300.00456 * 9 7 2 33 33 H 1.09008 * 109.46609 * 65.12486 * 13 11 10 34 34 H 1.09000 * 109.47084 * 305.12861 * 13 11 10 35 35 H 1.09001 * 109.46908 * 60.00696 * 17 15 14 36 36 H 1.08998 * 109.47099 * 300.00363 * 17 15 14 37 37 H 1.09008 * 110.84902 * 33.86385 * 20 18 17 38 38 H 1.08994 * 110.85280 * 270.44932 * 20 18 17 39 39 H 1.09001 * 109.82812 * 98.05625 * 21 20 18 40 40 H 1.08996 * 109.83275 * 218.93926 * 21 20 18 41 41 H 1.09004 * 110.30835 * 143.34597 * 23 22 21 42 42 H 1.09000 * 110.31021 * 265.41532 * 23 22 21 43 43 H 1.07998 * 120.03703 * 0.03358 * 25 24 10 44 44 H 1.07998 * 119.95935 * 180.22986 * 26 25 24 45 45 H 1.08006 * 119.92990 * 179.72123 * 27 26 25 46 46 H 1.08000 * 119.96525 * 180.02562 * 28 27 26 47 47 H 1.07997 * 120.03479 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.6408 -4.1249 1.1667 12 8 2.1764 -3.7289 2.2150 13 6 3.7072 -5.1897 1.1695 14 8 3.9178 -5.6602 2.5269 15 6 4.8422 -6.6173 2.7036 16 8 5.4554 -7.0473 1.7555 17 6 5.1152 -7.1555 4.0845 18 6 6.2033 -8.2283 4.0077 19 1 7.0717 -7.8658 3.4577 20 6 6.6043 -8.7212 5.4249 21 6 7.0785 -10.1650 5.1529 22 8 6.4965 -10.5855 3.9135 23 6 5.6565 -9.5455 3.3881 24 6 2.6577 -4.1444 -1.2122 25 6 3.9864 -3.9896 -1.5850 26 6 4.4331 -4.5195 -2.7797 27 6 3.5565 -5.1947 -3.6090 28 6 2.2317 -5.3465 -3.2429 29 6 1.7798 -4.8232 -2.0473 30 1 -0.4850 0.8400 0.0004 31 1 0.6240 -2.5567 -0.8903 32 1 0.6246 -2.5571 0.8897 33 1 4.6368 -4.7738 0.7808 34 1 3.3910 -6.0223 0.5412 35 1 4.2030 -7.5923 4.4911 36 1 5.4492 -6.3442 4.7312 37 1 5.7448 -8.7150 6.0954 38 1 7.4151 -8.1165 5.8309 39 1 8.1656 -10.1892 5.0780 40 1 6.7489 -10.8205 5.9590 41 1 5.7315 -9.5114 2.3012 42 1 4.6216 -9.7061 3.6904 43 1 4.6706 -3.4588 -0.9397 44 1 5.4672 -4.4026 -3.0685 45 1 3.9072 -5.6043 -4.5448 46 1 1.5496 -5.8747 -3.8926 47 1 0.7449 -4.9417 -1.7621 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000740384877.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:39 Heat of formation + Delta-G solvation = -154.636040 kcal Electronic energy + Delta-G solvation = -30204.189266 eV Core-core repulsion = 25930.511119 eV Total energy + Delta-G solvation = -4273.678148 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.01329 -41.28194 -40.21271 -39.52429 -37.67718 -36.57990 -34.85648 -34.71248 -32.01192 -31.34922 -30.96056 -30.38493 -28.87468 -27.89338 -25.01799 -23.94449 -23.50724 -23.38650 -22.56809 -21.28821 -20.71788 -19.06893 -18.87027 -18.62319 -18.09490 -17.78916 -17.32659 -17.17904 -16.88344 -16.66573 -16.53233 -16.04665 -15.84014 -15.49787 -15.37694 -14.73985 -14.63908 -14.42491 -14.35266 -14.24003 -13.98230 -13.71657 -13.62410 -13.42447 -13.12920 -13.08041 -12.72166 -12.67071 -12.47310 -12.33516 -12.23941 -12.15366 -11.99187 -11.96641 -11.78583 -11.70797 -11.56542 -11.12433 -10.69111 -10.49987 -10.19202 -9.87324 -9.33084 -8.27755 -6.42785 0.29472 0.45998 1.05464 1.16752 1.34146 1.38582 1.41518 1.47803 2.21024 2.37479 2.81392 2.91846 3.02635 3.27282 3.33107 3.62764 3.74544 3.84053 3.86111 3.93214 4.06234 4.08381 4.22254 4.26035 4.28897 4.37435 4.53083 4.55797 4.59860 4.61792 4.67872 4.78689 4.88579 4.90697 4.95307 5.05736 5.06008 5.11570 5.21807 5.29517 5.34168 5.49500 5.58816 5.60667 5.68747 5.95384 6.00966 6.02628 6.46256 6.59556 6.63395 7.05411 7.28040 8.79834 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011760 B = 0.002641 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.287431 B =10597.989569 C =12124.950839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.012 3.988 3 Si 0.968 3.032 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.054 0.946 9 C 0.266 3.734 10 N -0.555 5.555 11 C 0.510 3.490 12 O -0.559 6.559 13 C 0.068 3.932 14 O -0.349 6.349 15 C 0.457 3.543 16 O -0.526 6.526 17 C -0.096 4.096 18 C -0.109 4.109 19 H 0.088 0.912 20 C -0.142 4.142 21 C 0.041 3.959 22 O -0.411 6.411 23 C 0.051 3.949 24 C 0.114 3.886 25 C -0.138 4.138 26 C -0.103 4.103 27 C -0.118 4.118 28 C -0.103 4.103 29 C -0.137 4.137 30 H 0.269 0.731 31 H 0.026 0.974 32 H 0.010 0.990 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.131 0.869 36 H 0.137 0.863 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.117 0.883 44 H 0.153 0.847 45 H 0.160 0.840 46 H 0.155 0.845 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.584 -18.363 2.380 22.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.792 3.208 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.585 4.585 8 H 0.072 0.928 9 C 0.147 3.853 10 N -0.283 5.283 11 C 0.298 3.702 12 O -0.437 6.437 13 C -0.009 4.009 14 O -0.264 6.264 15 C 0.302 3.698 16 O -0.415 6.415 17 C -0.133 4.133 18 C -0.127 4.127 19 H 0.107 0.893 20 C -0.179 4.179 21 C -0.035 4.035 22 O -0.331 6.331 23 C -0.025 4.025 24 C 0.024 3.976 25 C -0.158 4.158 26 C -0.121 4.121 27 C -0.135 4.135 28 C -0.121 4.121 29 C -0.157 4.157 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.028 0.972 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.149 0.851 36 H 0.155 0.845 37 H 0.116 0.884 38 H 0.123 0.877 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.135 0.865 44 H 0.171 0.829 45 H 0.178 0.822 46 H 0.172 0.828 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 13.349 -18.328 2.573 22.819 hybrid contribution -0.228 1.483 -0.008 1.500 sum 13.120 -16.845 2.565 21.505 Atomic orbital electron populations 1.70030 1.07517 1.28453 1.50406 1.25832 0.95837 1.02973 0.94164 0.85459 0.78370 0.77938 0.79043 1.18735 1.20093 1.19927 1.21567 0.93270 0.91577 1.52102 0.92781 1.18928 0.87411 0.82600 0.96399 1.45664 1.45068 1.33770 1.03825 1.20513 0.83295 0.82967 0.83433 1.90683 1.58642 1.62326 1.32038 1.22646 0.98833 0.96978 0.82399 1.86567 1.56167 1.52617 1.31096 1.24629 0.75469 0.75755 0.93994 1.90662 1.48556 1.58014 1.44250 1.21482 1.02233 1.00340 0.89199 1.22750 0.98000 0.93999 0.97980 0.89327 1.23187 1.03819 0.95490 0.95399 1.23331 0.98608 0.95526 0.85996 1.88382 1.64866 1.40953 1.38934 1.23625 0.94338 0.85572 0.98989 1.18064 0.94199 0.97627 0.87757 1.21432 0.94638 1.00889 0.98828 1.21365 1.01406 0.96732 0.92629 1.21595 0.92928 0.98467 1.00547 1.21366 0.97028 0.98802 0.94917 1.21407 0.99591 0.98545 0.96156 0.92184 0.95569 0.97192 0.87046 0.87211 0.85067 0.84494 0.88371 0.87739 0.90655 0.90075 0.90736 0.91308 0.86525 0.82889 0.82196 0.82765 0.86469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.71 13.29 21.45 0.28 -55.42 16 2 C 0.01 0.67 5.46 84.66 0.46 1.13 16 3 Si 0.97 44.76 29.54 68.60 2.03 46.78 16 4 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 7 C -0.55 -31.72 9.39 25.60 0.24 -31.48 16 8 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 9 C 0.27 14.60 5.15 85.63 0.44 15.04 16 10 N -0.56 -24.96 2.51 -635.30 -1.59 -26.56 16 11 C 0.51 22.56 7.65 87.66 0.67 23.23 16 12 O -0.56 -29.63 16.06 15.66 0.25 -29.38 16 13 C 0.07 2.30 4.46 71.24 0.32 2.62 16 14 O -0.35 -11.13 9.76 -45.07 -0.44 -11.57 16 15 C 0.46 11.42 7.82 71.24 0.56 11.97 16 16 O -0.53 -14.98 14.81 21.98 0.33 -14.65 16 17 C -0.10 -1.44 5.35 29.85 0.16 -1.28 16 18 C -0.11 -1.61 2.63 -9.14 -0.02 -1.63 16 19 H 0.09 1.53 7.86 -2.39 -0.02 1.52 16 20 C -0.14 -1.33 6.48 31.86 0.21 -1.13 16 21 C 0.04 0.53 7.80 72.45 0.56 1.10 16 22 O -0.41 -8.54 11.36 -148.98 -1.69 -10.24 16 23 C 0.05 0.95 6.82 72.84 0.50 1.45 16 24 C 0.11 4.16 4.43 38.15 0.17 4.33 16 25 C -0.14 -4.32 8.45 22.39 0.19 -4.13 16 26 C -0.10 -2.41 10.04 22.25 0.22 -2.19 16 27 C -0.12 -2.40 10.04 22.29 0.22 -2.18 16 28 C -0.10 -2.40 10.04 22.25 0.22 -2.18 16 29 C -0.14 -4.35 9.66 22.39 0.22 -4.13 16 30 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 31 H 0.03 1.48 7.84 -2.39 -0.02 1.46 16 32 H 0.01 0.62 7.36 -2.38 -0.02 0.60 16 33 H 0.11 3.45 6.88 -2.38 -0.02 3.43 16 34 H 0.11 3.34 7.86 -2.39 -0.02 3.32 16 35 H 0.13 1.52 7.96 -2.39 -0.02 1.50 16 36 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.10 0.65 8.03 -2.38 -0.02 0.63 16 38 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.07 1.66 7.60 -2.38 -0.02 1.64 16 42 H 0.07 1.14 7.91 -2.39 -0.02 1.12 16 43 H 0.12 3.69 7.55 -2.91 -0.02 3.67 16 44 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 45 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 46 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 47 H 0.12 3.78 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -79.02 398.08 5.47 -73.55 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.97 Total: 16.93 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: 5.34 Total: 10.55 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -1.31 Total: -81.98 kcal Atomic # 8 Polarization: -64.28 SS G_CDS: -1.55 Total: -65.84 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -79.02 5.47 -73.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740384877.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.086 kcal (2) G-P(sol) polarization free energy of solvation -79.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds