Wall clock time and date at job start Wed Apr 1 2020 05:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48495 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47069 * 300.00245 * 3 2 1 6 6 H 1.48505 * 109.47042 * 60.00062 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.93037 * 179.72269 * 11 10 9 13 13 C 1.38324 * 120.06728 * 0.56797 * 12 11 10 14 14 C 1.38283 * 120.13947 * 359.68120 * 13 12 11 15 15 C 1.50702 * 119.96579 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 270.02222 * 15 14 13 17 17 O 1.20826 * 119.99723 * 359.97438 * 16 15 14 18 18 O 1.34223 * 119.99743 * 179.97438 * 16 15 14 19 19 C 1.45199 * 116.99656 * 179.97438 * 18 16 15 20 20 C 1.50701 * 109.47216 * 179.97438 * 19 18 16 21 21 O 1.21281 * 119.99830 * 0.02562 * 20 19 18 22 22 N 1.34774 * 120.00329 * 180.02562 * 20 19 18 23 23 C 1.46926 * 120.62907 * 359.72110 * 22 20 19 24 24 C 1.53627 * 108.54455 * 126.36865 * 23 22 20 25 25 C 1.53038 * 109.24012 * 54.85578 * 24 23 22 26 26 C 1.53047 * 109.54094 * 298.51288 * 25 24 23 27 27 C 1.46927 * 120.63228 * 180.02562 * 22 20 19 28 28 C 1.38123 * 120.06577 * 0.04594 * 14 13 12 29 29 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 31 31 H 1.07993 * 119.96486 * 180.27241 * 12 11 10 32 32 H 1.08001 * 119.93050 * 179.70445 * 13 12 11 33 33 H 1.08997 * 109.47004 * 30.02720 * 15 14 13 34 34 H 1.08999 * 109.46889 * 150.02243 * 15 14 13 35 35 H 1.09002 * 109.47370 * 300.00168 * 19 18 16 36 36 H 1.09004 * 109.47479 * 60.00306 * 19 18 16 37 37 H 1.09003 * 109.59009 * 246.20243 * 23 22 20 38 38 H 1.09005 * 109.58623 * 6.62763 * 23 22 20 39 39 H 1.09005 * 109.63115 * 294.86701 * 24 23 22 40 40 H 1.08997 * 109.46023 * 174.74425 * 24 23 22 41 41 H 1.09006 * 109.45848 * 178.49255 * 25 24 23 42 42 H 1.08993 * 109.46038 * 58.53351 * 25 24 23 43 43 H 1.08997 * 109.49568 * 301.41864 * 26 25 24 44 44 H 1.08998 * 109.49757 * 181.31375 * 26 25 24 45 45 H 1.08993 * 109.58634 * 353.36736 * 27 22 20 46 46 H 1.09000 * 109.58969 * 113.80039 * 27 22 20 47 47 H 1.08006 * 120.03219 * 180.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8910 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1986 13 6 3.5684 -5.8208 0.3192 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2649 -7.8051 -0.9051 17 8 1.6176 -7.1974 -1.8880 18 8 0.6629 -8.9979 -1.0335 19 6 0.4679 -9.4959 -2.3834 20 6 -0.2169 -10.8372 -2.3300 21 8 -0.5120 -11.3252 -1.2596 22 7 -0.5015 -11.4946 -3.4716 23 6 -0.1557 -10.9135 -4.7761 24 6 0.6738 -11.9393 -5.5634 25 6 -0.1010 -13.2563 -5.6479 26 6 -0.3330 -13.8051 -4.2382 27 6 -1.1693 -12.8028 -3.4357 28 6 1.4365 -4.7345 0.2256 29 1 -0.4849 0.8401 -0.0004 30 1 3.9527 -2.4857 -0.0140 31 1 5.2811 -4.5473 0.1885 32 1 4.1534 -6.7248 0.4030 33 1 2.1300 -7.9003 1.0435 34 1 0.5456 -7.0924 0.9735 35 1 -0.1499 -8.7942 -2.9439 36 1 1.4350 -9.6015 -2.8750 37 1 -1.0677 -10.6786 -5.3248 38 1 0.4285 -10.0052 -4.6282 39 1 1.6241 -12.1081 -5.0569 40 1 0.8596 -11.5612 -6.5687 41 1 0.4727 -13.9785 -6.2289 42 1 -1.0617 -13.0820 -6.1324 43 1 0.6268 -13.9563 -3.7442 44 1 -0.8644 -14.7547 -4.3004 45 1 -1.2540 -13.1416 -2.4032 46 1 -2.1622 -12.7186 -3.8775 47 1 0.3579 -4.7882 0.2370 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760636889.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:33 Heat of formation + Delta-G solvation = -124.504559 kcal Electronic energy + Delta-G solvation = -29218.122526 eV Core-core repulsion = 24945.750977 eV Total energy + Delta-G solvation = -4272.371548 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.89540 -40.14050 -38.96547 -37.77728 -36.80331 -36.06856 -33.49724 -32.48198 -32.10598 -31.76286 -29.46751 -29.02382 -27.17215 -25.56915 -25.22504 -23.69556 -22.12404 -21.60233 -21.29645 -20.35851 -19.50689 -18.02727 -17.70435 -17.26008 -16.92280 -16.86197 -16.59449 -15.65616 -15.50219 -15.07978 -15.01479 -14.66150 -14.47444 -14.41344 -14.31942 -13.82987 -13.71837 -13.51328 -13.49051 -12.97995 -12.88231 -12.68186 -12.55394 -12.43428 -11.89119 -11.81457 -11.56693 -11.49255 -11.29270 -11.23539 -11.08961 -10.89314 -10.88015 -10.80294 -10.63974 -10.43828 -10.42044 -10.07830 -9.33957 -9.12343 -8.83575 -8.12192 -7.23485 -6.43456 -4.02520 1.82809 2.18171 2.24026 2.30761 2.38456 3.01002 3.14016 3.14677 3.20309 3.97395 3.97881 4.20352 4.33563 4.40049 4.53177 4.54898 4.71022 4.76737 4.78300 4.86386 4.92171 5.00042 5.07599 5.11013 5.20942 5.24099 5.29216 5.33211 5.42008 5.49826 5.52674 5.57878 5.64879 5.74042 5.79934 5.91586 6.01941 6.15595 6.30210 6.32271 6.64163 6.86025 6.89642 7.06752 7.22710 7.35362 7.43119 7.71950 7.79369 7.83382 8.01407 9.02253 9.72447 10.74738 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.019757 B = 0.001770 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.897828 B =15813.273794 C =16222.960734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.179 6.179 10 C 0.154 3.846 11 C -0.226 4.226 12 C -0.075 4.075 13 C -0.194 4.194 14 C -0.044 4.044 15 C -0.062 4.062 16 C 0.462 3.538 17 O -0.489 6.489 18 O -0.338 6.338 19 C 0.049 3.951 20 C 0.520 3.480 21 O -0.516 6.516 22 N -0.612 5.612 23 C 0.101 3.899 24 C -0.137 4.137 25 C -0.121 4.121 26 C -0.135 4.135 27 C 0.112 3.888 28 C -0.172 4.172 29 H 0.269 0.731 30 H 0.127 0.873 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.094 0.906 46 H 0.069 0.931 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.772 -25.158 -9.485 26.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.467 4.467 8 H 0.110 0.890 9 O -0.082 6.082 10 C 0.100 3.900 11 C -0.246 4.246 12 C -0.093 4.093 13 C -0.213 4.213 14 C -0.045 4.045 15 C -0.099 4.099 16 C 0.304 3.696 17 O -0.374 6.374 18 O -0.255 6.255 19 C -0.029 4.029 20 C 0.307 3.693 21 O -0.391 6.391 22 N -0.348 5.348 23 C -0.022 4.022 24 C -0.175 4.175 25 C -0.159 4.159 26 C -0.174 4.174 27 C -0.010 4.010 28 C -0.191 4.191 29 H 0.079 0.921 30 H 0.145 0.855 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.113 0.887 46 H 0.088 0.912 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.278 -25.015 -9.234 26.667 hybrid contribution 0.564 0.894 -0.412 1.134 sum 0.842 -24.122 -9.646 25.992 Atomic orbital electron populations 1.70054 1.05943 1.27508 1.46294 1.25292 0.95852 0.98819 0.96619 0.85641 0.79130 0.80391 0.78222 1.19109 1.20186 1.20146 1.21371 0.91819 0.80799 1.52738 0.89022 1.83978 1.34255 1.11378 1.78601 1.19263 0.90254 0.87970 0.92494 1.21214 0.93825 0.99067 1.10464 1.20689 0.98474 0.92240 0.97894 1.20381 0.93169 0.97105 1.10670 1.18664 0.93349 0.91454 1.01010 1.20264 1.03866 0.95136 0.90676 1.24011 0.74064 0.78166 0.93340 1.90722 1.46789 1.59609 1.40293 1.86580 1.72646 1.36383 1.29875 1.22643 1.02290 0.93959 0.83993 1.20114 0.79155 0.86135 0.83922 1.90743 1.51965 1.67869 1.28476 1.48006 1.60492 1.20624 1.05721 1.21972 1.00048 0.96682 0.83521 1.22005 0.99119 0.95617 1.00737 1.21528 1.00700 0.96856 0.96779 1.21937 1.01058 0.98416 0.95940 1.21634 0.95077 0.81711 1.02552 1.19974 0.99204 0.89959 1.09977 0.92104 0.85493 0.87310 0.87699 0.86926 0.86774 0.88087 0.88235 0.90558 0.89444 0.91227 0.90290 0.91483 0.91581 0.91387 0.90515 0.88727 0.91226 0.86582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.50 13.67 55.48 0.76 -24.74 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 3 Si 0.94 20.68 29.55 -169.99 -5.02 15.65 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 7 C -0.39 -11.04 9.49 30.89 0.29 -10.74 16 8 H 0.09 2.40 5.21 -52.49 -0.27 2.12 16 9 O -0.18 -5.17 9.76 0.05 0.00 -5.17 16 10 C 0.15 3.79 6.65 -39.11 -0.26 3.53 16 11 C -0.23 -5.02 9.17 -39.39 -0.36 -5.38 16 12 C -0.07 -1.40 10.04 -39.61 -0.40 -1.80 16 13 C -0.19 -3.43 9.70 -39.53 -0.38 -3.82 16 14 C -0.04 -0.80 4.37 -104.65 -0.46 -1.26 16 15 C -0.06 -0.87 5.94 -29.03 -0.17 -1.04 16 16 C 0.46 7.02 7.95 36.01 0.29 7.31 16 17 O -0.49 -8.85 15.78 -18.75 -0.30 -9.15 16 18 O -0.34 -4.75 9.75 -45.88 -0.45 -5.20 16 19 C 0.05 0.54 4.29 36.01 0.15 0.69 16 20 C 0.52 5.96 7.78 -10.99 -0.09 5.88 16 21 O -0.52 -7.88 15.91 -14.10 -0.22 -8.11 16 22 N -0.61 -5.05 2.97 -172.48 -0.51 -5.56 16 23 C 0.10 0.56 6.37 -3.48 -0.02 0.54 16 24 C -0.14 -0.63 6.10 -26.39 -0.16 -0.79 16 25 C -0.12 -0.52 5.88 -26.69 -0.16 -0.67 16 26 C -0.14 -0.70 6.08 -26.59 -0.16 -0.86 16 27 C 0.11 0.79 6.43 -3.69 -0.02 0.76 16 28 C -0.17 -3.71 9.65 -39.40 -0.38 -4.09 16 29 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 31 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.11 1.25 8.08 -51.93 -0.42 0.83 16 34 H 0.11 1.41 8.08 -51.93 -0.42 0.99 16 35 H 0.10 1.01 7.93 -51.93 -0.41 0.60 16 36 H 0.10 0.94 7.69 -51.93 -0.40 0.54 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.09 0.46 5.93 -51.93 -0.31 0.15 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.09 0.82 7.00 -51.93 -0.36 0.46 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.12 2.42 8.06 -52.48 -0.42 2.00 16 LS Contribution 393.28 15.07 5.93 5.93 Total: -1.00 -35.73 393.28 -8.88 -44.61 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -6.68 Total: 2.49 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -2.39 Total: -10.77 kcal Atomic # 7 Polarization: -30.55 SS G_CDS: 0.25 Total: -30.30 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.97 Total: -27.61 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.73 -8.88 -44.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760636889.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.890 kcal (2) G-P(sol) polarization free energy of solvation -35.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds