Wall clock time and date at job start Wed Apr 1 2020 05:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48495 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47069 * 300.00245 * 3 2 1 6 6 H 1.48505 * 109.47042 * 60.00062 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.93037 * 179.72269 * 11 10 9 13 13 C 1.38324 * 120.06728 * 0.56797 * 12 11 10 14 14 C 1.38283 * 120.13947 * 359.68120 * 13 12 11 15 15 C 1.50702 * 119.96579 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 270.02222 * 15 14 13 17 17 O 1.20826 * 119.99723 * 359.97438 * 16 15 14 18 18 O 1.34223 * 119.99743 * 179.97438 * 16 15 14 19 19 C 1.45199 * 116.99656 * 179.97438 * 18 16 15 20 20 C 1.50701 * 109.47216 * 179.97438 * 19 18 16 21 21 O 1.21281 * 119.99830 * 0.02562 * 20 19 18 22 22 N 1.34774 * 120.00329 * 180.02562 * 20 19 18 23 23 C 1.46926 * 120.62907 * 359.72110 * 22 20 19 24 24 C 1.53627 * 108.54455 * 126.36865 * 23 22 20 25 25 C 1.53038 * 109.24012 * 54.85578 * 24 23 22 26 26 C 1.53047 * 109.54094 * 298.51288 * 25 24 23 27 27 C 1.46927 * 120.63228 * 180.02562 * 22 20 19 28 28 C 1.38123 * 120.06577 * 0.04594 * 14 13 12 29 29 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 31 31 H 1.07993 * 119.96486 * 180.27241 * 12 11 10 32 32 H 1.08001 * 119.93050 * 179.70445 * 13 12 11 33 33 H 1.08997 * 109.47004 * 30.02720 * 15 14 13 34 34 H 1.08999 * 109.46889 * 150.02243 * 15 14 13 35 35 H 1.09002 * 109.47370 * 300.00168 * 19 18 16 36 36 H 1.09004 * 109.47479 * 60.00306 * 19 18 16 37 37 H 1.09003 * 109.59009 * 246.20243 * 23 22 20 38 38 H 1.09005 * 109.58623 * 6.62763 * 23 22 20 39 39 H 1.09005 * 109.63115 * 294.86701 * 24 23 22 40 40 H 1.08997 * 109.46023 * 174.74425 * 24 23 22 41 41 H 1.09006 * 109.45848 * 178.49255 * 25 24 23 42 42 H 1.08993 * 109.46038 * 58.53351 * 25 24 23 43 43 H 1.08997 * 109.49568 * 301.41864 * 26 25 24 44 44 H 1.08998 * 109.49757 * 181.31375 * 26 25 24 45 45 H 1.08993 * 109.58634 * 353.36736 * 27 22 20 46 46 H 1.09000 * 109.58969 * 113.80039 * 27 22 20 47 47 H 1.08006 * 120.03219 * 180.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8910 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1986 13 6 3.5684 -5.8208 0.3192 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2649 -7.8051 -0.9051 17 8 1.6176 -7.1974 -1.8880 18 8 0.6629 -8.9979 -1.0335 19 6 0.4679 -9.4959 -2.3834 20 6 -0.2169 -10.8372 -2.3300 21 8 -0.5120 -11.3252 -1.2596 22 7 -0.5015 -11.4946 -3.4716 23 6 -0.1557 -10.9135 -4.7761 24 6 0.6738 -11.9393 -5.5634 25 6 -0.1010 -13.2563 -5.6479 26 6 -0.3330 -13.8051 -4.2382 27 6 -1.1693 -12.8028 -3.4357 28 6 1.4365 -4.7345 0.2256 29 1 -0.4849 0.8401 -0.0004 30 1 3.9527 -2.4857 -0.0140 31 1 5.2811 -4.5473 0.1885 32 1 4.1534 -6.7248 0.4030 33 1 2.1300 -7.9003 1.0435 34 1 0.5456 -7.0924 0.9735 35 1 -0.1499 -8.7942 -2.9439 36 1 1.4350 -9.6015 -2.8750 37 1 -1.0677 -10.6786 -5.3248 38 1 0.4285 -10.0052 -4.6282 39 1 1.6241 -12.1081 -5.0569 40 1 0.8596 -11.5612 -6.5687 41 1 0.4727 -13.9785 -6.2289 42 1 -1.0617 -13.0820 -6.1324 43 1 0.6268 -13.9563 -3.7442 44 1 -0.8644 -14.7547 -4.3004 45 1 -1.2540 -13.1416 -2.4032 46 1 -2.1622 -12.7186 -3.8775 47 1 0.3579 -4.7882 0.2370 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760636889.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:32 Heat of formation + Delta-G solvation = -145.459639 kcal Electronic energy + Delta-G solvation = -29219.031206 eV Core-core repulsion = 24945.750977 eV Total energy + Delta-G solvation = -4273.280229 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.92724 -41.12350 -40.62172 -38.63547 -38.29336 -37.35575 -34.35918 -34.12653 -33.63430 -32.28883 -30.98715 -30.14594 -28.50056 -27.26510 -26.13182 -24.23072 -23.47380 -23.13016 -22.05165 -21.73658 -20.16892 -19.51421 -19.04891 -18.80798 -18.08389 -17.94481 -17.54658 -16.79060 -16.57308 -16.45079 -16.15203 -16.09497 -15.50093 -15.44028 -15.21484 -15.07872 -14.87948 -14.54726 -14.46067 -14.28609 -14.07417 -13.82517 -13.66608 -13.58523 -13.29983 -12.98598 -12.92984 -12.52070 -12.42343 -12.26251 -12.24851 -12.08306 -11.95997 -11.91157 -11.71104 -11.65309 -11.51827 -11.21212 -10.96401 -10.81235 -9.79053 -9.70823 -9.00506 -8.46902 -6.15387 0.39435 0.73004 1.11417 1.22463 1.32599 1.35068 1.43919 1.53693 2.12106 2.17857 2.83694 3.15092 3.23129 3.39381 3.67600 3.76799 3.88394 3.90879 3.95696 3.99243 4.03316 4.08325 4.09744 4.28978 4.32741 4.37354 4.45521 4.54092 4.57630 4.60165 4.72861 4.78164 4.87861 4.89253 4.99822 5.03227 5.12072 5.13165 5.18915 5.21698 5.29262 5.42578 5.47183 5.62016 5.69847 5.72573 6.02563 6.13588 6.20298 6.64435 6.91537 6.97771 7.78781 8.76719 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.019757 B = 0.001770 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.897828 B =15813.273794 C =16222.960734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.020 2.980 4 H -0.251 1.251 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.413 4.413 8 H 0.102 0.898 9 O -0.234 6.234 10 C 0.111 3.889 11 C -0.240 4.240 12 C -0.072 4.072 13 C -0.175 4.175 14 C -0.037 4.037 15 C -0.062 4.062 16 C 0.470 3.530 17 O -0.524 6.524 18 O -0.344 6.344 19 C 0.045 3.955 20 C 0.517 3.483 21 O -0.564 6.564 22 N -0.604 5.604 23 C 0.093 3.907 24 C -0.134 4.134 25 C -0.119 4.119 26 C -0.130 4.130 27 C 0.107 3.893 28 C -0.189 4.189 29 H 0.272 0.728 30 H 0.120 0.880 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.154 0.846 34 H 0.131 0.869 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.061 0.939 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.055 0.945 44 H 0.091 0.909 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.941 -27.297 -10.399 29.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.840 3.160 4 H -0.174 1.174 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.489 4.489 8 H 0.119 0.881 9 O -0.141 6.141 10 C 0.061 3.939 11 C -0.259 4.259 12 C -0.090 4.090 13 C -0.193 4.193 14 C -0.037 4.037 15 C -0.099 4.099 16 C 0.314 3.686 17 O -0.412 6.412 18 O -0.260 6.260 19 C -0.032 4.032 20 C 0.305 3.695 21 O -0.443 6.443 22 N -0.338 5.338 23 C -0.029 4.029 24 C -0.172 4.172 25 C -0.157 4.157 26 C -0.168 4.168 27 C -0.015 4.015 28 C -0.208 4.208 29 H 0.081 0.919 30 H 0.137 0.863 31 H 0.166 0.834 32 H 0.168 0.832 33 H 0.172 0.828 34 H 0.148 0.852 35 H 0.129 0.871 36 H 0.136 0.864 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.114 0.886 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.074 0.926 44 H 0.110 0.890 45 H 0.091 0.909 46 H 0.103 0.897 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.471 -27.233 -10.183 29.179 hybrid contribution -0.052 1.157 -0.177 1.171 sum 2.419 -26.076 -10.360 28.163 Atomic orbital electron populations 1.70200 1.08042 1.28691 1.49067 1.26618 0.96888 1.02779 0.95926 0.84507 0.78251 0.74747 0.78544 1.17400 1.19423 1.19262 1.21872 0.92542 0.81409 1.53059 0.88055 1.83940 1.35935 1.12562 1.81623 1.19849 0.91697 0.87873 0.94438 1.21345 0.93052 1.00383 1.11111 1.21147 1.00379 0.91286 0.96168 1.21008 0.93205 0.98361 1.06765 1.19071 0.93924 0.92110 0.98581 1.20377 1.05285 0.93435 0.90796 1.24071 0.73253 0.78061 0.93183 1.90719 1.48545 1.60520 1.41452 1.86553 1.72118 1.35692 1.31641 1.22888 1.03538 0.93944 0.82842 1.20224 0.78947 0.86216 0.84124 1.90720 1.54299 1.69007 1.30233 1.48133 1.59137 1.20678 1.05871 1.22243 1.01149 0.97146 0.82322 1.22007 0.98460 0.95512 1.01239 1.21539 1.01295 0.96791 0.96052 1.21903 1.00186 0.98536 0.96152 1.21777 0.96229 0.81567 1.01896 1.20226 0.99440 0.90425 1.10698 0.91877 0.86255 0.83382 0.83163 0.82849 0.85153 0.87063 0.86390 0.88997 0.89059 0.92066 0.88626 0.90555 0.90658 0.92626 0.89022 0.90866 0.89700 0.87306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.46 13.67 21.61 0.30 -57.17 16 2 C -0.03 -1.44 5.49 84.83 0.47 -0.98 16 3 Si 1.02 43.47 29.55 68.60 2.03 45.50 16 4 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 5 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 6 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 7 C -0.41 -24.50 9.49 67.92 0.64 -23.86 16 8 H 0.10 5.52 5.21 -2.91 -0.02 5.51 16 9 O -0.23 -14.44 9.76 -22.74 -0.22 -14.66 16 10 C 0.11 5.73 6.65 22.58 0.15 5.88 16 11 C -0.24 -10.68 9.17 22.39 0.21 -10.48 16 12 C -0.07 -2.50 10.04 22.25 0.22 -2.27 16 13 C -0.18 -5.49 9.70 22.30 0.22 -5.27 16 14 C -0.04 -1.25 4.37 -19.88 -0.09 -1.33 16 15 C -0.06 -1.55 5.94 29.10 0.17 -1.38 16 16 C 0.47 13.33 7.95 71.24 0.57 13.90 16 17 O -0.52 -18.21 15.78 21.96 0.35 -17.86 16 18 O -0.34 -9.12 9.75 -44.99 -0.44 -9.56 16 19 C 0.04 0.94 4.29 71.24 0.31 1.24 16 20 C 0.52 11.58 7.78 87.66 0.68 12.26 16 21 O -0.56 -17.39 15.91 15.77 0.25 -17.14 16 22 N -0.60 -9.27 2.97 -817.98 -2.43 -11.70 16 23 C 0.09 0.85 6.37 86.51 0.55 1.40 16 24 C -0.13 -0.91 6.10 30.82 0.19 -0.72 16 25 C -0.12 -0.71 5.88 30.62 0.18 -0.53 16 26 C -0.13 -1.13 6.08 30.69 0.19 -0.95 16 27 C 0.11 1.40 6.43 86.38 0.56 1.96 16 28 C -0.19 -8.31 9.65 22.39 0.22 -8.09 16 29 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 30 H 0.12 5.38 5.64 -2.91 -0.02 5.36 16 31 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 32 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 33 H 0.15 2.63 8.08 -2.39 -0.02 2.62 16 34 H 0.13 2.90 8.08 -2.39 -0.02 2.88 16 35 H 0.11 2.10 7.93 -2.39 -0.02 2.08 16 36 H 0.12 2.02 7.69 -2.38 -0.02 2.00 16 37 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.09 0.77 5.93 -2.38 -0.01 0.76 16 39 H 0.06 0.53 8.14 -2.38 -0.02 0.52 16 40 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.08 0.36 8.14 -2.38 -0.02 0.34 16 42 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.07 1.30 7.00 -2.39 -0.02 1.28 16 46 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -84.25 393.28 6.24 -78.01 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.99 Total: 23.80 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: 5.42 Total: -19.22 kcal Atomic # 7 Polarization: -66.73 SS G_CDS: -2.13 Total: -68.86 kcal Atomic # 8 Polarization: -59.16 SS G_CDS: -0.06 Total: -59.22 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -84.25 6.24 -78.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760636889.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.453 kcal (2) G-P(sol) polarization free energy of solvation -84.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds