Wall clock time and date at job start Wed Apr 1 2020 05:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48494 * 109.47230 * 240.00354 * 3 2 1 5 5 H 1.48506 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47099 * 119.99967 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.93037 * 179.72269 * 11 10 9 13 13 C 1.38324 * 120.06728 * 0.56797 * 12 11 10 14 14 C 1.38283 * 120.13947 * 359.68120 * 13 12 11 15 15 C 1.50702 * 119.96579 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 270.02222 * 15 14 13 17 17 O 1.20826 * 119.99723 * 359.97438 * 16 15 14 18 18 O 1.34223 * 119.99743 * 179.97438 * 16 15 14 19 19 C 1.45199 * 116.99656 * 179.97438 * 18 16 15 20 20 C 1.50701 * 109.47216 * 179.97438 * 19 18 16 21 21 O 1.21281 * 119.99830 * 0.02562 * 20 19 18 22 22 N 1.34774 * 120.00329 * 180.02562 * 20 19 18 23 23 C 1.46495 * 120.00231 * 180.02562 * 22 20 19 24 24 C 1.53007 * 109.47321 * 179.97438 * 23 22 20 25 25 C 1.53778 * 113.61673 * 274.13863 * 24 23 22 26 26 C 1.53951 * 87.01883 * 220.04805 * 25 24 23 27 27 C 1.53775 * 87.11233 * 25.36180 * 26 25 24 28 28 C 1.38123 * 120.06577 * 0.04594 * 14 13 12 29 29 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 31 31 H 1.07993 * 119.96486 * 180.27241 * 12 11 10 32 32 H 1.08001 * 119.93050 * 179.70445 * 13 12 11 33 33 H 1.08997 * 109.47004 * 30.02720 * 15 14 13 34 34 H 1.08999 * 109.46889 * 150.02243 * 15 14 13 35 35 H 1.09002 * 109.47370 * 300.00168 * 19 18 16 36 36 H 1.09004 * 109.47479 * 60.00306 * 19 18 16 37 37 H 0.97007 * 119.99850 * 359.97438 * 22 20 19 38 38 H 1.08998 * 109.47108 * 299.99672 * 23 22 20 39 39 H 1.09006 * 109.47227 * 60.00317 * 23 22 20 40 40 H 1.08998 * 112.84463 * 45.33249 * 24 23 22 41 41 H 1.09000 * 113.61241 * 334.56400 * 25 24 23 42 42 H 1.08999 * 113.61479 * 105.46440 * 25 24 23 43 43 H 1.09008 * 113.53499 * 270.81182 * 26 25 24 44 44 H 1.09002 * 113.66662 * 139.93722 * 26 25 24 45 45 H 1.08999 * 113.61338 * 220.09059 * 27 26 25 46 46 H 1.09001 * 113.69533 * 89.20031 * 27 26 25 47 47 H 1.08006 * 120.03219 * 180.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2847 2.7465 -0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1986 13 6 3.5684 -5.8208 0.3192 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2649 -7.8051 -0.9051 17 8 1.6176 -7.1974 -1.8880 18 8 0.6629 -8.9979 -1.0335 19 6 0.4679 -9.4959 -2.3834 20 6 -0.2169 -10.8372 -2.3300 21 8 -0.5120 -11.3252 -1.2596 22 7 -0.5015 -11.4946 -3.4716 23 6 -1.1677 -12.7983 -3.4197 24 6 -1.3731 -13.3231 -4.8422 25 6 -2.6629 -12.8135 -5.5066 26 6 -2.8292 -14.2304 -6.0852 27 6 -1.9915 -14.7300 -4.8964 28 6 1.4365 -4.7345 0.2256 29 1 -0.4849 0.8401 -0.0004 30 1 3.9527 -2.4857 -0.0140 31 1 5.2811 -4.5473 0.1885 32 1 4.1534 -6.7248 0.4030 33 1 2.1300 -7.9003 1.0435 34 1 0.5456 -7.0924 0.9735 35 1 -0.1499 -8.7942 -2.9439 36 1 1.4350 -9.6015 -2.8750 37 1 -0.2658 -11.1041 -4.3278 38 1 -0.5501 -13.4998 -2.8589 39 1 -2.1351 -12.6927 -2.9286 40 1 -0.4867 -13.2113 -5.4666 41 1 -3.4413 -12.5384 -4.7950 42 1 -2.4911 -12.0488 -6.2642 43 1 -2.3417 -14.3663 -7.0507 44 1 -3.8586 -14.5890 -6.0754 45 1 -1.2784 -15.5104 -5.1621 46 1 -2.5847 -14.9804 -4.0169 47 1 0.3579 -4.7882 0.2370 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760639630.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:41 Heat of formation + Delta-G solvation = -106.960897 kcal Electronic energy + Delta-G solvation = -28371.013671 eV Core-core repulsion = 24099.402873 eV Total energy + Delta-G solvation = -4271.610798 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.74574 -40.02859 -39.10591 -38.83489 -36.84729 -36.09252 -34.83628 -32.48131 -32.09669 -30.28444 -29.25041 -28.06502 -26.86821 -26.14679 -25.24295 -23.31916 -22.01785 -21.55307 -21.09403 -20.34649 -19.88204 -17.92914 -17.76014 -17.49964 -16.99246 -16.84481 -16.49713 -16.10394 -15.64428 -15.38800 -15.04777 -14.83247 -14.61327 -14.39938 -14.04116 -13.93243 -13.59066 -13.51571 -13.06174 -12.99095 -12.76290 -12.56811 -12.51244 -12.43664 -12.17211 -11.87414 -11.56384 -11.27382 -11.16384 -10.97219 -10.88523 -10.86567 -10.81615 -10.80751 -10.64302 -10.46095 -10.43990 -10.11598 -9.51122 -9.34415 -8.82349 -8.11912 -7.23219 -6.42785 -4.02080 1.84689 2.21650 2.29171 2.31558 2.40431 3.13688 3.14727 3.18319 3.19585 3.98016 4.00586 4.05667 4.13969 4.31065 4.35120 4.53713 4.70054 4.77179 4.80357 4.87737 4.92669 5.08467 5.11418 5.16962 5.21318 5.21997 5.23832 5.38367 5.42146 5.46551 5.50133 5.65155 5.65821 5.74280 5.88375 5.91880 6.00235 6.15658 6.29483 6.32482 6.64454 6.89956 7.00048 7.06544 7.22867 7.35441 7.43309 7.76751 7.80356 7.84523 8.01706 9.02611 9.72642 10.75202 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.018788 B = 0.001556 C = 0.001479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.974057 B =17995.311280 C =18927.300473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.091 0.909 9 O -0.178 6.178 10 C 0.154 3.846 11 C -0.227 4.227 12 C -0.075 4.075 13 C -0.194 4.194 14 C -0.045 4.045 15 C -0.062 4.062 16 C 0.462 3.538 17 O -0.489 6.489 18 O -0.338 6.338 19 C 0.047 3.953 20 C 0.516 3.484 21 O -0.516 6.516 22 N -0.728 5.728 23 C 0.131 3.869 24 C -0.126 4.126 25 C -0.139 4.139 26 C -0.143 4.143 27 C -0.131 4.131 28 C -0.172 4.172 29 H 0.270 0.730 30 H 0.127 0.873 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.403 0.597 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.085 0.915 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.349 -26.323 -9.389 27.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.109 0.891 9 O -0.082 6.082 10 C 0.100 3.900 11 C -0.246 4.246 12 C -0.093 4.093 13 C -0.213 4.213 14 C -0.045 4.045 15 C -0.099 4.099 16 C 0.304 3.696 17 O -0.374 6.374 18 O -0.254 6.254 19 C -0.030 4.030 20 C 0.301 3.699 21 O -0.390 6.390 22 N -0.383 5.383 23 C 0.008 3.992 24 C -0.145 4.145 25 C -0.176 4.176 26 C -0.181 4.181 27 C -0.169 4.169 28 C -0.191 4.191 29 H 0.080 0.920 30 H 0.145 0.855 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.237 0.763 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.115 0.885 41 H 0.102 0.898 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.103 0.897 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.914 -26.280 -8.932 27.823 hybrid contribution 0.692 1.070 -0.724 1.465 sum -1.221 -25.211 -9.656 27.024 Atomic orbital electron populations 1.70034 1.05943 1.27725 1.46102 1.25281 0.95840 0.98790 0.96571 0.85783 0.78691 0.79797 0.79165 1.19537 1.20297 1.19496 1.21273 0.91762 0.80827 1.52993 0.89140 1.83977 1.34234 1.11369 1.78596 1.19263 0.90257 0.87969 0.92505 1.21211 0.93827 0.99062 1.10493 1.20687 0.98471 0.92240 0.97889 1.20380 0.93167 0.97104 1.10680 1.18669 0.93358 0.91469 1.01022 1.20262 1.03856 0.95128 0.90686 1.24009 0.74076 0.78179 0.93329 1.90726 1.46770 1.59605 1.40288 1.86580 1.72663 1.36382 1.29822 1.22586 1.02451 0.93888 0.84122 1.20147 0.79289 0.86126 0.84363 1.90761 1.51496 1.67889 1.28868 1.45818 1.62313 1.21528 1.08602 1.21414 0.97813 0.83449 0.96548 1.22846 0.98612 0.97476 0.95580 1.23054 0.97241 0.97082 1.00213 1.22840 1.00607 0.96574 0.98036 1.22868 0.99280 0.95595 0.99146 1.19971 0.99195 0.89953 1.09978 0.92005 0.85505 0.87311 0.87696 0.86928 0.86783 0.88028 0.88172 0.76273 0.91162 0.91084 0.88475 0.89754 0.91226 0.90100 0.91228 0.91106 0.89651 0.86588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.49 13.67 55.48 0.76 -24.73 16 2 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 3 Si 0.94 20.65 29.55 -169.99 -5.02 15.63 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.39 -11.08 9.49 30.89 0.29 -10.79 16 8 H 0.09 2.36 5.21 -52.49 -0.27 2.08 16 9 O -0.18 -5.17 9.76 0.05 0.00 -5.17 16 10 C 0.15 3.79 6.65 -39.11 -0.26 3.53 16 11 C -0.23 -5.03 9.17 -39.39 -0.36 -5.39 16 12 C -0.07 -1.40 10.04 -39.61 -0.40 -1.80 16 13 C -0.19 -3.43 9.70 -39.53 -0.38 -3.82 16 14 C -0.04 -0.81 4.37 -104.65 -0.46 -1.27 16 15 C -0.06 -0.86 5.94 -29.03 -0.17 -1.03 16 16 C 0.46 6.97 7.95 36.01 0.29 7.26 16 17 O -0.49 -8.84 15.78 -18.75 -0.30 -9.13 16 18 O -0.34 -4.64 9.75 -45.88 -0.45 -5.09 16 19 C 0.05 0.49 5.94 36.01 0.21 0.71 16 20 C 0.52 5.49 7.91 -10.99 -0.09 5.40 16 21 O -0.52 -7.70 16.50 -14.10 -0.23 -7.93 16 22 N -0.73 -5.02 5.56 -60.29 -0.33 -5.35 16 23 C 0.13 0.84 5.50 -4.04 -0.02 0.82 16 24 C -0.13 -0.54 3.75 -89.81 -0.34 -0.88 16 25 C -0.14 -0.60 7.65 -25.83 -0.20 -0.80 16 26 C -0.14 -0.56 8.09 -25.83 -0.21 -0.77 16 27 C -0.13 -0.53 7.65 -25.92 -0.20 -0.72 16 28 C -0.17 -3.71 9.65 -39.40 -0.38 -4.09 16 29 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 31 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.11 1.25 8.08 -51.93 -0.42 0.83 16 34 H 0.11 1.40 8.08 -51.93 -0.42 0.98 16 35 H 0.10 0.95 8.13 -51.93 -0.42 0.52 16 36 H 0.10 0.87 8.13 -51.93 -0.42 0.45 16 37 H 0.40 1.67 8.47 -40.82 -0.35 1.32 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.53 7.87 -51.93 -0.41 0.12 16 40 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.41 7.92 -51.93 -0.41 0.00 16 42 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.08 0.28 8.14 -51.92 -0.42 -0.14 16 44 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 46 H 0.08 0.35 8.10 -51.93 -0.42 -0.07 16 47 H 0.12 2.42 8.06 -52.48 -0.42 2.00 16 LS Contribution 403.80 15.07 6.09 6.09 Total: -1.00 -36.00 403.80 -9.04 -45.03 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -6.78 Total: 3.31 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -2.77 Total: -12.65 kcal Atomic # 7 Polarization: -30.51 SS G_CDS: 0.42 Total: -30.09 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.98 Total: -27.32 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.00 -9.04 -45.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760639630.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.928 kcal (2) G-P(sol) polarization free energy of solvation -35.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds