Wall clock time and date at job start Wed Apr 1 2020 05:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48494 * 109.47230 * 240.00354 * 3 2 1 5 5 H 1.48506 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47099 * 119.99967 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.93037 * 179.72269 * 11 10 9 13 13 C 1.38324 * 120.06728 * 0.56797 * 12 11 10 14 14 C 1.38283 * 120.13947 * 359.68120 * 13 12 11 15 15 C 1.50702 * 119.96579 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 270.02222 * 15 14 13 17 17 O 1.20826 * 119.99723 * 359.97438 * 16 15 14 18 18 O 1.34223 * 119.99743 * 179.97438 * 16 15 14 19 19 C 1.45199 * 116.99656 * 179.97438 * 18 16 15 20 20 C 1.50701 * 109.47216 * 179.97438 * 19 18 16 21 21 O 1.21281 * 119.99830 * 0.02562 * 20 19 18 22 22 N 1.34774 * 120.00329 * 180.02562 * 20 19 18 23 23 C 1.46495 * 120.00231 * 180.02562 * 22 20 19 24 24 C 1.53007 * 109.47321 * 179.97438 * 23 22 20 25 25 C 1.53778 * 113.61673 * 274.13863 * 24 23 22 26 26 C 1.53951 * 87.01883 * 220.04805 * 25 24 23 27 27 C 1.53775 * 87.11233 * 25.36180 * 26 25 24 28 28 C 1.38123 * 120.06577 * 0.04594 * 14 13 12 29 29 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 31 31 H 1.07993 * 119.96486 * 180.27241 * 12 11 10 32 32 H 1.08001 * 119.93050 * 179.70445 * 13 12 11 33 33 H 1.08997 * 109.47004 * 30.02720 * 15 14 13 34 34 H 1.08999 * 109.46889 * 150.02243 * 15 14 13 35 35 H 1.09002 * 109.47370 * 300.00168 * 19 18 16 36 36 H 1.09004 * 109.47479 * 60.00306 * 19 18 16 37 37 H 0.97007 * 119.99850 * 359.97438 * 22 20 19 38 38 H 1.08998 * 109.47108 * 299.99672 * 23 22 20 39 39 H 1.09006 * 109.47227 * 60.00317 * 23 22 20 40 40 H 1.08998 * 112.84463 * 45.33249 * 24 23 22 41 41 H 1.09000 * 113.61241 * 334.56400 * 25 24 23 42 42 H 1.08999 * 113.61479 * 105.46440 * 25 24 23 43 43 H 1.09008 * 113.53499 * 270.81182 * 26 25 24 44 44 H 1.09002 * 113.66662 * 139.93722 * 26 25 24 45 45 H 1.08999 * 113.61338 * 220.09059 * 27 26 25 46 46 H 1.09001 * 113.69533 * 89.20031 * 27 26 25 47 47 H 1.08006 * 120.03219 * 180.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2847 2.7465 -0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1986 13 6 3.5684 -5.8208 0.3192 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2649 -7.8051 -0.9051 17 8 1.6176 -7.1974 -1.8880 18 8 0.6629 -8.9979 -1.0335 19 6 0.4679 -9.4959 -2.3834 20 6 -0.2169 -10.8372 -2.3300 21 8 -0.5120 -11.3252 -1.2596 22 7 -0.5015 -11.4946 -3.4716 23 6 -1.1677 -12.7983 -3.4197 24 6 -1.3731 -13.3231 -4.8422 25 6 -2.6629 -12.8135 -5.5066 26 6 -2.8292 -14.2304 -6.0852 27 6 -1.9915 -14.7300 -4.8964 28 6 1.4365 -4.7345 0.2256 29 1 -0.4849 0.8401 -0.0004 30 1 3.9527 -2.4857 -0.0140 31 1 5.2811 -4.5473 0.1885 32 1 4.1534 -6.7248 0.4030 33 1 2.1300 -7.9003 1.0435 34 1 0.5456 -7.0924 0.9735 35 1 -0.1499 -8.7942 -2.9439 36 1 1.4350 -9.6015 -2.8750 37 1 -0.2658 -11.1041 -4.3278 38 1 -0.5501 -13.4998 -2.8589 39 1 -2.1351 -12.6927 -2.9286 40 1 -0.4867 -13.2113 -5.4666 41 1 -3.4413 -12.5384 -4.7950 42 1 -2.4911 -12.0488 -6.2642 43 1 -2.3417 -14.3663 -7.0507 44 1 -3.8586 -14.5890 -6.0754 45 1 -1.2784 -15.5104 -5.1621 46 1 -2.5847 -14.9804 -4.0169 47 1 0.3579 -4.7882 0.2370 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760639630.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:40 Heat of formation + Delta-G solvation = -129.231677 kcal Electronic energy + Delta-G solvation = -28371.979405 eV Core-core repulsion = 24099.402873 eV Total energy + Delta-G solvation = -4272.576532 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.83721 -40.91880 -40.57199 -39.54764 -38.43219 -37.38241 -35.57603 -34.35209 -33.64242 -31.19045 -30.82789 -29.08286 -27.94554 -27.21607 -26.48389 -23.90411 -23.37922 -23.07764 -21.92221 -21.74429 -20.29177 -19.52209 -18.91677 -18.83496 -18.39182 -17.92431 -17.27262 -16.89443 -16.71884 -16.59882 -16.23435 -16.12131 -15.97365 -15.50174 -15.32851 -15.12553 -14.77142 -14.70037 -14.39226 -14.08343 -13.93733 -13.72239 -13.57882 -13.33117 -12.95717 -12.92397 -12.89458 -12.63187 -12.49603 -12.42662 -12.24073 -12.13574 -11.91008 -11.68257 -11.55437 -11.38727 -11.21359 -11.17442 -10.94894 -10.79121 -10.20481 -9.70210 -9.00040 -8.46126 -6.14916 0.40389 0.73721 1.13664 1.28612 1.35243 1.39642 1.46723 1.51730 2.18469 2.30750 2.85106 3.16977 3.40158 3.49580 3.65429 3.70732 3.72924 3.81483 3.96662 3.99082 4.01928 4.08734 4.11018 4.29720 4.29960 4.38121 4.49540 4.54759 4.61282 4.69560 4.73342 4.87388 4.88894 4.96713 5.01543 5.10551 5.11211 5.12326 5.19639 5.24783 5.30311 5.38572 5.60435 5.62499 5.70343 5.73055 6.02661 6.20926 6.35081 6.68008 6.98216 7.05985 7.79059 8.76957 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.018788 B = 0.001556 C = 0.001479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.974057 B =17995.311280 C =18927.300473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 1.019 2.981 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.415 4.415 8 H 0.102 0.898 9 O -0.234 6.234 10 C 0.111 3.889 11 C -0.240 4.240 12 C -0.072 4.072 13 C -0.175 4.175 14 C -0.037 4.037 15 C -0.062 4.062 16 C 0.471 3.529 17 O -0.525 6.525 18 O -0.344 6.344 19 C 0.042 3.958 20 C 0.518 3.482 21 O -0.565 6.565 22 N -0.709 5.709 23 C 0.130 3.870 24 C -0.118 4.118 25 C -0.141 4.141 26 C -0.142 4.142 27 C -0.132 4.132 28 C -0.188 4.188 29 H 0.272 0.728 30 H 0.120 0.880 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.154 0.846 34 H 0.130 0.870 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.419 0.581 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.111 0.889 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.068 0.932 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.046 -28.487 -10.000 30.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.180 1.180 7 C -0.491 4.491 8 H 0.119 0.881 9 O -0.141 6.141 10 C 0.061 3.939 11 C -0.260 4.260 12 C -0.090 4.090 13 C -0.193 4.193 14 C -0.038 4.038 15 C -0.099 4.099 16 C 0.315 3.685 17 O -0.413 6.413 18 O -0.260 6.260 19 C -0.035 4.035 20 C 0.304 3.696 21 O -0.443 6.443 22 N -0.363 5.363 23 C 0.007 3.993 24 C -0.136 4.136 25 C -0.179 4.179 26 C -0.179 4.179 27 C -0.170 4.170 28 C -0.208 4.208 29 H 0.081 0.919 30 H 0.138 0.862 31 H 0.166 0.834 32 H 0.169 0.831 33 H 0.172 0.828 34 H 0.148 0.852 35 H 0.131 0.869 36 H 0.140 0.860 37 H 0.256 0.744 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.129 0.871 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.107 0.893 44 H 0.087 0.913 45 H 0.096 0.904 46 H 0.100 0.900 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.506 -28.518 -9.582 30.089 hybrid contribution 0.007 1.334 -0.566 1.449 sum 0.513 -27.184 -10.148 29.021 Atomic orbital electron populations 1.70188 1.08042 1.28814 1.48898 1.26605 0.96864 1.02743 0.95842 0.84641 0.77378 0.74201 0.79938 1.18241 1.19628 1.18028 1.21794 0.92534 0.81441 1.53351 0.88101 1.83937 1.35937 1.12569 1.81645 1.19855 0.91709 0.87875 0.94456 1.21350 0.93059 1.00407 1.11146 1.21149 1.00379 0.91294 0.96169 1.21011 0.93210 0.98361 1.06756 1.19088 0.93940 0.92165 0.98559 1.20373 1.05256 0.93392 0.90890 1.24041 0.73264 0.78118 0.93111 1.90724 1.48589 1.60564 1.41468 1.86549 1.72081 1.35589 1.31759 1.22868 1.03916 0.93856 0.82871 1.20228 0.78837 0.86110 0.84465 1.90744 1.53824 1.69053 1.30680 1.45720 1.60818 1.21312 1.08414 1.21469 0.96926 0.82911 0.97947 1.22827 0.99126 0.97510 0.94146 1.23062 0.97007 0.97592 1.00202 1.22850 1.00693 0.96072 0.98283 1.22890 0.99398 0.95572 0.99134 1.20222 0.99425 0.90418 1.10699 0.91880 0.86235 0.83378 0.83131 0.82839 0.85183 0.86899 0.85996 0.74387 0.91834 0.92274 0.87093 0.90606 0.90722 0.89339 0.91287 0.90429 0.90007 0.87324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.41 13.67 21.61 0.30 -57.12 16 2 C -0.02 -1.34 5.49 84.83 0.47 -0.87 16 3 Si 1.02 43.38 29.55 68.60 2.03 45.41 16 4 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 7 C -0.42 -24.67 9.49 67.92 0.64 -24.02 16 8 H 0.10 5.48 5.21 -2.91 -0.02 5.47 16 9 O -0.23 -14.48 9.76 -22.74 -0.22 -14.70 16 10 C 0.11 5.71 6.65 22.58 0.15 5.86 16 11 C -0.24 -10.71 9.17 22.39 0.21 -10.51 16 12 C -0.07 -2.50 10.04 22.25 0.22 -2.27 16 13 C -0.18 -5.47 9.70 22.30 0.22 -5.25 16 14 C -0.04 -1.27 4.37 -19.88 -0.09 -1.35 16 15 C -0.06 -1.53 5.94 29.10 0.17 -1.36 16 16 C 0.47 13.09 7.95 71.24 0.57 13.65 16 17 O -0.53 -18.08 15.78 21.96 0.35 -17.73 16 18 O -0.34 -8.74 9.75 -44.99 -0.44 -9.18 16 19 C 0.04 0.80 5.94 71.24 0.42 1.22 16 20 C 0.52 10.37 7.91 87.66 0.69 11.06 16 21 O -0.56 -16.60 16.50 15.77 0.26 -16.34 16 22 N -0.71 -8.63 5.56 -463.06 -2.57 -11.20 16 23 C 0.13 1.54 5.50 86.38 0.48 2.02 16 24 C -0.12 -0.80 3.75 -10.27 -0.04 -0.84 16 25 C -0.14 -1.03 7.65 31.18 0.24 -0.80 16 26 C -0.14 -0.90 8.09 31.18 0.25 -0.65 16 27 C -0.13 -0.87 7.65 31.12 0.24 -0.63 16 28 C -0.19 -8.29 9.65 22.39 0.22 -8.07 16 29 H 0.27 15.56 8.31 -92.71 -0.77 14.78 16 30 H 0.12 5.37 5.64 -2.91 -0.02 5.36 16 31 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 32 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 33 H 0.15 2.58 8.08 -2.39 -0.02 2.56 16 34 H 0.13 2.86 8.08 -2.39 -0.02 2.84 16 35 H 0.11 1.91 8.13 -2.39 -0.02 1.89 16 36 H 0.12 1.80 8.13 -2.38 -0.02 1.78 16 37 H 0.42 2.48 8.47 -92.70 -0.79 1.70 16 38 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.06 0.87 7.87 -2.38 -0.02 0.85 16 40 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.08 0.69 7.92 -2.39 -0.02 0.67 16 42 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.09 0.44 8.14 -2.38 -0.02 0.42 16 44 H 0.07 0.45 8.14 -2.39 -0.02 0.44 16 45 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.08 0.60 8.10 -2.39 -0.02 0.58 16 47 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -84.49 403.80 4.96 -79.53 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: 0.21 Total: 24.14 kcal Atomic # 6 Polarization: -27.87 SS G_CDS: 5.06 Total: -22.81 kcal Atomic # 7 Polarization: -66.04 SS G_CDS: -2.28 Total: -68.32 kcal Atomic # 8 Polarization: -57.89 SS G_CDS: -0.05 Total: -57.94 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -84.49 4.96 -79.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760639630.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.701 kcal (2) G-P(sol) polarization free energy of solvation -84.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds