Wall clock time and date at job start Wed Apr 1 2020 04:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00250 * 2 1 4 4 H 1.48499 * 109.47316 * 270.00415 * 3 2 1 5 5 H 1.48501 * 109.47207 * 30.00123 * 3 2 1 6 6 H 1.48494 * 109.47176 * 150.00359 * 3 2 1 7 7 C 1.38703 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99948 * 359.97438 * 7 2 1 9 9 O 1.34810 * 119.99974 * 179.97438 * 7 2 1 10 10 C 1.35508 * 116.99710 * 185.05742 * 9 7 2 11 11 C 1.38823 * 120.16898 * 354.39018 * 10 9 7 12 12 C 1.38028 * 120.08297 * 180.02562 * 11 10 9 13 13 C 1.38588 * 120.40874 * 0.02562 * 12 11 10 14 14 C 1.37806 * 120.33558 * 0.02562 * 13 12 11 15 15 C 1.39734 * 119.91198 * 359.97438 * 14 13 12 16 16 C 1.47395 * 120.20534 * 180.02562 * 15 14 13 17 17 O 1.21506 * 120.00140 * 180.02562 * 16 15 14 18 18 O 1.34765 * 119.99623 * 0.02562 * 16 15 14 19 19 C 1.45194 * 116.99702 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47082 * 180.02562 * 19 18 16 21 21 N 1.46500 * 109.47328 * 65.00658 * 20 19 18 22 22 C 1.34773 * 120.00254 * 180.02562 * 21 20 19 23 23 O 1.21281 * 119.99977 * 359.97438 * 22 21 20 24 24 C 1.50698 * 119.99856 * 179.97438 * 22 21 20 25 25 C 1.54261 * 110.03273 * 297.90282 * 24 22 21 26 26 C 1.54961 * 104.16275 * 217.13871 * 25 24 22 27 27 C 1.54891 * 102.77745 * 37.88800 * 26 25 24 28 28 C 1.53881 * 110.03033 * 180.68555 * 24 22 21 29 29 H 0.97006 * 119.99680 * 359.97438 * 1 2 3 30 30 H 1.08006 * 119.96163 * 0.05139 * 11 10 9 31 31 H 1.07992 * 119.79365 * 180.28485 * 12 11 10 32 32 H 1.08001 * 119.83494 * 179.97438 * 13 12 11 33 33 H 1.07995 * 120.04642 * 180.02562 * 14 13 12 34 34 H 1.08999 * 109.47902 * 300.00483 * 19 18 16 35 35 H 1.09005 * 109.46853 * 60.00469 * 19 18 16 36 36 H 1.09008 * 109.47200 * 185.00451 * 20 19 18 37 37 H 1.09003 * 109.47085 * 305.00415 * 20 19 18 38 38 H 0.97007 * 119.99457 * 359.97438 * 21 20 19 39 39 H 1.08994 * 110.02108 * 59.29718 * 24 22 21 40 40 H 1.09000 * 110.48558 * 335.78532 * 25 24 22 41 41 H 1.08997 * 110.48808 * 98.42716 * 25 24 22 42 42 H 1.09002 * 110.72067 * 279.57554 * 26 25 24 43 43 H 1.09006 * 110.92755 * 156.29579 * 26 25 24 44 44 H 1.09000 * 110.48507 * 203.40766 * 27 26 25 45 45 H 1.09000 * 110.59844 * 80.81729 * 27 26 25 46 46 H 1.08997 * 110.02930 * 238.56355 * 28 24 22 47 47 H 1.08995 * 110.03092 * 0.02562 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4400 0.6999 7 6 2.0086 -1.2012 -0.0005 8 1 1.4686 -2.1365 -0.0005 9 8 3.3567 -1.2012 -0.0011 10 6 3.9718 -2.4039 -0.1080 11 6 3.2242 -3.5736 -0.0937 12 6 3.8526 -4.7977 -0.2022 13 6 5.2311 -4.8701 -0.3255 14 6 5.9899 -3.7199 -0.3406 15 6 5.3679 -2.4734 -0.2316 16 6 6.1732 -1.2389 -0.2476 17 8 5.6286 -0.1570 -0.1521 18 8 7.5136 -1.3104 -0.3680 19 6 8.2424 -0.0547 -0.3769 20 6 9.7396 -0.3350 -0.5209 21 7 9.9992 -0.9429 -1.8283 22 6 11.2568 -1.2786 -2.1777 23 8 12.1737 -1.0770 -1.4099 24 6 11.5236 -1.9044 -3.5224 25 6 10.7862 -3.2549 -3.6324 26 6 11.7652 -4.1579 -4.4245 27 6 13.1477 -3.7333 -3.8701 28 6 13.0245 -2.2081 -3.6739 29 1 -0.4850 0.8401 0.0004 30 1 2.1494 -3.5257 0.0020 31 1 3.2661 -5.7045 -0.1952 32 1 5.7132 -5.8329 -0.4094 33 1 7.0637 -3.7818 -0.4373 34 1 7.9052 0.5554 -1.2148 35 1 8.0602 0.4777 0.5567 36 1 10.2939 0.6000 -0.4384 37 1 10.0589 -1.0174 0.2669 38 1 9.2656 -1.1044 -2.4422 39 1 11.1962 -1.2344 -4.3173 40 1 10.6011 -3.6702 -2.6418 41 1 9.8502 -3.1351 -4.1778 42 1 11.6985 -3.9544 -5.4933 43 1 11.5743 -5.2116 -4.2208 44 1 13.9340 -3.9631 -4.5892 45 1 13.3468 -4.2256 -2.9182 46 1 13.4251 -1.6863 -4.5429 47 1 13.5597 -1.9033 -2.7746 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766091935.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:06 Heat of formation + Delta-G solvation = -156.335225 kcal Electronic energy + Delta-G solvation = -30075.315390 eV Core-core repulsion = 25801.563560 eV Total energy + Delta-G solvation = -4273.751830 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.70042 -41.15316 -40.49345 -38.29503 -38.12944 -37.50696 -35.81805 -34.55438 -32.54557 -31.43019 -30.85714 -29.65564 -29.37645 -27.39031 -25.55355 -24.08421 -23.17041 -22.60273 -21.93493 -21.52309 -20.53271 -19.90703 -19.43163 -18.51564 -18.44642 -17.76320 -17.49591 -16.86724 -16.57578 -16.52034 -16.05517 -15.89558 -15.74811 -15.61737 -15.47095 -15.15229 -14.77067 -14.41560 -14.30204 -14.14186 -14.07056 -13.90006 -13.74173 -13.16200 -12.95122 -12.83210 -12.65727 -12.61355 -12.40056 -12.21145 -12.04670 -12.00577 -11.91353 -11.74674 -11.67685 -11.62331 -11.38882 -11.18084 -10.98992 -10.78886 -10.17451 -9.97336 -9.22383 -8.59949 -6.29913 -0.11548 0.61920 1.25719 1.29567 1.55815 1.57775 1.63542 1.67185 2.15872 2.26543 2.71871 2.92367 3.08878 3.52373 3.58420 3.69400 3.83439 3.87178 3.97732 4.03488 4.21301 4.26111 4.30574 4.45027 4.47615 4.49953 4.57503 4.59053 4.64802 4.71358 4.72941 4.80326 4.83351 5.01830 5.06249 5.11548 5.24400 5.26662 5.27285 5.28810 5.33027 5.47462 5.48618 5.49586 5.59044 5.68795 5.80754 6.11040 6.48326 6.75043 6.88610 7.19505 7.50492 8.49912 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013794 B = 0.002566 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.361783 B =10908.190807 C =12219.705109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.027 3.973 3 Si 0.954 3.046 4 H -0.273 1.273 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.404 4.404 8 H 0.095 0.905 9 O -0.207 6.207 10 C 0.170 3.830 11 C -0.251 4.251 12 C -0.029 4.029 13 C -0.194 4.194 14 C -0.009 4.009 15 C -0.224 4.224 16 C 0.510 3.490 17 O -0.534 6.534 18 O -0.346 6.346 19 C 0.054 3.946 20 C 0.132 3.868 21 N -0.719 5.719 22 C 0.518 3.482 23 O -0.582 6.582 24 C -0.111 4.111 25 C -0.114 4.114 26 C -0.120 4.120 27 C -0.125 4.125 28 C -0.121 4.121 29 H 0.287 0.713 30 H 0.121 0.879 31 H 0.155 0.845 32 H 0.166 0.834 33 H 0.162 0.838 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.414 0.586 39 H 0.118 0.882 40 H 0.061 0.939 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.055 0.945 46 H 0.079 0.921 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.115 -9.209 -8.625 26.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.174 4.174 3 Si 0.778 3.222 4 H -0.198 1.198 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.480 4.480 8 H 0.113 0.887 9 O -0.111 6.111 10 C 0.117 3.883 11 C -0.270 4.270 12 C -0.047 4.047 13 C -0.212 4.212 14 C -0.027 4.027 15 C -0.227 4.227 16 C 0.357 3.643 17 O -0.425 6.425 18 O -0.264 6.264 19 C -0.021 4.021 20 C 0.009 3.991 21 N -0.371 5.371 22 C 0.306 3.694 23 O -0.463 6.463 24 C -0.132 4.132 25 C -0.152 4.152 26 C -0.157 4.157 27 C -0.162 4.162 28 C -0.159 4.159 29 H 0.097 0.903 30 H 0.139 0.861 31 H 0.173 0.827 32 H 0.184 0.816 33 H 0.179 0.821 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.118 0.882 37 H 0.094 0.906 38 H 0.250 0.750 39 H 0.136 0.864 40 H 0.079 0.921 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.073 0.927 46 H 0.098 0.902 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 23.494 -8.329 -8.004 26.180 hybrid contribution -0.921 1.184 0.127 1.506 sum 22.572 -7.145 -7.876 24.952 Atomic orbital electron populations 1.69678 1.06507 1.29711 1.48769 1.25073 0.95649 1.01537 0.95175 0.85427 0.79176 0.78394 0.79198 1.19838 1.19222 1.18742 1.20893 0.78029 0.96456 1.52586 0.88739 1.83728 1.21209 1.26894 1.79281 1.19669 0.91412 0.85985 0.91249 1.21316 1.00776 0.92583 1.12318 1.21528 0.95710 0.96441 0.91056 1.21267 0.93125 0.99307 1.07483 1.21413 1.00976 0.89180 0.91153 1.18434 0.88840 0.92918 1.22472 1.21162 0.81002 0.89329 0.72776 1.90920 1.72905 1.31451 1.47185 1.86520 1.18992 1.36445 1.84431 1.23384 0.90377 0.84195 1.04102 1.21356 0.91465 1.00146 0.86154 1.45973 1.09400 1.63014 1.18744 1.21117 0.81799 0.76833 0.89683 1.90656 1.44819 1.56113 1.54683 1.22035 0.98568 0.99058 0.93560 1.22396 0.99120 0.92571 1.01133 1.22515 0.93576 0.99507 1.00151 1.22370 0.98318 0.94613 1.00930 1.22166 0.93753 0.97295 1.02656 0.90345 0.86122 0.82703 0.81608 0.82050 0.90264 0.89627 0.88214 0.90622 0.75024 0.86374 0.92065 0.89167 0.90023 0.90666 0.90399 0.92652 0.90235 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.59 13.96 21.62 0.30 -53.28 16 2 C 0.03 1.55 5.49 84.85 0.47 2.01 16 3 Si 0.95 48.20 28.62 68.60 1.96 50.17 16 4 H -0.27 -13.50 7.11 99.48 0.71 -12.80 16 5 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.26 -14.11 7.11 99.48 0.71 -13.40 16 7 C -0.40 -23.53 9.95 67.93 0.68 -22.85 16 8 H 0.10 5.56 5.44 -2.91 -0.02 5.54 16 9 O -0.21 -11.42 6.67 1.02 0.01 -11.41 16 10 C 0.17 7.78 6.66 22.92 0.15 7.94 16 11 C -0.25 -10.01 9.16 22.36 0.20 -9.80 16 12 C -0.03 -0.83 10.03 22.30 0.22 -0.61 16 13 C -0.19 -4.60 10.02 22.25 0.22 -4.37 16 14 C -0.01 -0.25 9.61 22.53 0.22 -0.04 16 15 C -0.22 -8.49 5.89 -20.00 -0.12 -8.61 16 16 C 0.51 19.46 7.89 70.23 0.55 20.01 16 17 O -0.53 -25.13 14.96 26.81 0.40 -24.73 16 18 O -0.35 -9.71 9.42 -56.76 -0.53 -10.25 16 19 C 0.05 1.22 5.61 71.98 0.40 1.63 16 20 C 0.13 2.50 6.07 86.38 0.52 3.02 16 21 N -0.72 -12.59 5.45 -463.06 -2.52 -15.11 16 22 C 0.52 10.40 7.00 87.66 0.61 11.02 16 23 O -0.58 -16.34 15.21 -3.03 -0.05 -16.39 16 24 C -0.11 -1.54 3.29 -10.82 -0.04 -1.58 16 25 C -0.11 -1.32 6.29 31.69 0.20 -1.12 16 26 C -0.12 -1.19 6.91 31.91 0.22 -0.97 16 27 C -0.12 -1.53 6.83 31.67 0.22 -1.31 16 28 C -0.12 -1.80 6.40 31.32 0.20 -1.60 16 29 H 0.29 15.59 8.31 -92.70 -0.77 14.82 16 30 H 0.12 5.26 5.64 -2.91 -0.02 5.24 16 31 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 32 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 33 H 0.16 3.31 7.61 -2.91 -0.02 3.29 16 34 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 36 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.41 5.98 8.46 -92.70 -0.78 5.19 16 39 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.06 0.86 7.85 -2.39 -0.02 0.84 16 41 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.07 0.68 8.14 -2.38 -0.02 0.67 16 44 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.06 1.30 6.39 -2.39 -0.02 1.28 16 Total: -1.00 -76.39 394.06 4.73 -71.66 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.22 Total: 16.58 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: 4.94 Total: -7.23 kcal Atomic # 7 Polarization: -66.18 SS G_CDS: -2.22 Total: -68.40 kcal Atomic # 8 Polarization: -62.60 SS G_CDS: -0.17 Total: -62.77 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 1.96 Total: 50.17 kcal Total: -76.39 4.73 -71.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766091935.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.678 kcal (2) G-P(sol) polarization free energy of solvation -76.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds