Wall clock time and date at job start Wed Apr 1 2020 04:45:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31415 * 1
3 3 Si 1.86800 * 119.99792 * 2 1
4 4 H 1.48505 * 109.47154 * 269.99966 * 3 2 1
5 5 H 1.48495 * 109.47557 * 30.00487 * 3 2 1
6 6 H 1.48506 * 109.47160 * 150.00492 * 3 2 1
7 7 C 1.38949 * 119.99918 * 180.02562 * 2 1 3
8 8 H 1.07998 * 120.00011 * 179.97438 * 7 2 1
9 9 N 1.37103 * 119.99871 * 359.97438 * 7 2 1
10 10 C 1.34772 * 119.99674 * 180.02562 * 9 7 2
11 11 O 1.21297 * 120.00154 * 0.02562 * 10 9 7
12 12 C 1.50702 * 120.00065 * 179.97438 * 10 9 7
13 13 O 1.45202 * 109.47207 * 179.97438 * 12 10 9
14 14 C 1.34232 * 116.99521 * 179.97438 * 13 12 10
15 15 O 1.20816 * 120.00065 * 0.02562 * 14 13 12
16 16 C 1.50697 * 119.99546 * 180.02562 * 14 13 12
17 17 C 1.52995 * 115.55222 * 294.40258 * 16 14 13
18 18 C 1.53001 * 109.47218 * 278.65584 * 17 16 14
19 19 O 1.42900 * 109.47204 * 175.04778 * 18 17 16
20 20 C 1.42900 * 113.99982 * 179.97438 * 19 18 17
21 21 C 1.50697 * 109.47397 * 179.97438 * 20 19 18
22 22 C 1.38239 * 120.00122 * 89.99545 * 21 20 19
23 23 C 1.38234 * 120.00212 * 179.97438 * 22 21 20
24 24 C 1.38232 * 119.99898 * 0.09278 * 23 22 21
25 25 C 1.38234 * 119.99960 * 359.86421 * 24 23 22
26 26 C 1.38231 * 120.00095 * 269.97673 * 21 20 19
27 27 C 1.53004 * 117.51873 * 80.10409 * 16 14 13
28 28 C 1.52992 * 59.99950 * 107.48068 * 27 16 14
29 29 H 0.97003 * 119.99443 * 359.97438 * 1 2 3
30 30 H 0.97000 * 119.99952 * 0.02562 * 9 7 2
31 31 H 1.09001 * 109.46839 * 60.00005 * 12 10 9
32 32 H 1.08999 * 109.46723 * 300.00009 * 12 10 9
33 33 H 1.08994 * 109.47632 * 158.65113 * 17 16 14
34 34 H 1.08998 * 109.47362 * 38.65557 * 17 16 14
35 35 H 1.08995 * 109.47299 * 55.04270 * 18 17 16
36 36 H 1.09002 * 109.46547 * 295.04922 * 18 17 16
37 37 H 1.08998 * 109.47278 * 59.99589 * 20 19 18
38 38 H 1.09008 * 109.46959 * 300.00015 * 20 19 18
39 39 H 1.08001 * 119.99681 * 359.70884 * 22 21 20
40 40 H 1.08001 * 120.00046 * 179.97438 * 23 22 21
41 41 H 1.07996 * 119.99857 * 179.97438 * 24 23 22
42 42 H 1.07997 * 120.00075 * 180.02562 * 25 24 23
43 43 H 1.08001 * 119.99949 * 0.02562 * 26 21 20
44 44 H 1.09003 * 117.49988 * 214.97439 * 27 16 14
45 45 H 1.09002 * 117.49867 * 359.97438 * 27 16 14
46 46 H 1.09006 * 117.49763 * 252.51138 * 28 27 16
47 47 H 1.09001 * 117.52250 * 107.48345 * 28 27 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2481 1.6178 0.0000
4 1 2.4956 2.0465 -1.4001
5 1 1.4457 2.6527 0.7001
6 1 3.5458 1.4402 0.7000
7 6 2.0089 -1.2033 -0.0005
8 1 3.0889 -1.2034 -0.0010
9 7 1.3233 -2.3907 -0.0005
10 6 1.9972 -3.5578 -0.0005
11 8 3.2102 -3.5578 -0.0001
12 6 1.2437 -4.8630 0.0000
13 8 2.1873 -5.9666 -0.0007
14 6 1.6742 -7.2070 0.0002
15 8 0.4764 -7.3652 0.0012
16 6 2.5922 -8.4021 0.0002
17 6 3.4455 -8.5786 -1.2574
18 6 2.6110 -9.2500 -2.3499
19 8 3.3698 -9.3106 -3.5593
20 6 2.6783 -9.9238 -4.6492
21 6 3.5669 -9.9333 -5.8663
22 6 4.4084 -11.0050 -6.0994
23 6 5.2231 -11.0140 -7.2161
24 6 5.1977 -9.9505 -8.0987
25 6 4.3555 -8.8793 -7.8662
26 6 3.5401 -8.8706 -6.7500
27 6 3.2087 -8.8200 1.3367
28 6 2.1031 -9.6686 0.7055
29 1 -0.4849 0.8401 0.0004
30 1 0.3533 -2.3906 -0.0005
31 1 0.6167 -4.9209 -0.8897
32 1 0.6174 -4.9205 0.8903
33 1 4.3095 -9.2014 -1.0258
34 1 3.7841 -7.6032 -1.6066
35 1 1.7024 -8.6724 -2.5196
36 1 2.3464 -10.2597 -2.0360
37 1 1.7708 -9.3605 -4.8667
38 1 2.4154 -10.9476 -4.3828
39 1 4.4325 -11.8332 -5.4066
40 1 5.8809 -11.8510 -7.3979
41 1 5.8345 -9.9573 -8.9710
42 1 4.3353 -8.0486 -8.5560
43 1 2.8827 -8.0333 -6.5679
44 1 4.2223 -9.2206 1.3200
45 1 2.9507 -8.2302 2.2163
46 1 1.1175 -9.6373 1.1700
47 1 2.3889 -10.6276 0.2734
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000770611070.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:45:57
Heat of formation + Delta-G solvation = -119.968522 kcal
Electronic energy + Delta-G solvation = -28888.501646 eV
Core-core repulsion = 24616.326795 eV
Total energy + Delta-G solvation = -4272.174851 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.161 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-40.66809 -39.64023 -38.52932 -37.95731 -37.18199 -35.95849 -33.99468 -32.58293
-31.37833 -31.17241 -30.60505 -28.60275 -26.33181 -25.20055 -24.20222 -23.06387
-22.85760 -22.38558 -21.59090 -19.64381 -19.56842 -18.06729 -17.49618 -17.06599
-16.83039 -16.64705 -16.27780 -16.19748 -15.72648 -15.60965 -15.04100 -14.83918
-14.54848 -14.37438 -14.06656 -13.83946 -13.69602 -13.43083 -13.17760 -13.03791
-12.83862 -12.52935 -12.28864 -11.98097 -11.85121 -11.77562 -11.61683 -11.60853
-11.26605 -11.21759 -11.13115 -10.83034 -10.45750 -10.43701 -10.41057 -10.29468
-10.15769 -9.83025 -9.60083 -9.18694 -9.11782 -8.51548 -8.07871 -6.49639
-3.91580 0.98187 1.13601 2.20971 2.59757 3.13657 3.14811 3.23735
3.29964 3.46350 3.74016 3.79981 4.10669 4.34614 4.47401 4.52631
4.53977 4.63294 4.71585 4.77211 4.84410 4.91373 4.99698 5.03042
5.08628 5.14739 5.15485 5.22231 5.27547 5.37451 5.39060 5.46066
5.56662 5.64227 5.68512 5.68719 5.76275 5.80745 5.84100 5.96951
6.06105 6.16495 6.23233 6.31838 6.60483 6.70320 6.94495 7.48273
7.83524 7.96576 8.49004 9.07551 9.39658 9.89712 10.67607
Molecular weight = 347.16amu
Principal moments of inertia in cm(-1)
A = 0.008771 B = 0.002142 C = 0.001805
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3191.595326 B =13066.411444 C =15510.762012
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.897 5.897
2 C 0.024 3.976
3 Si 0.934 3.066
4 H -0.277 1.277
5 H -0.283 1.283
6 H -0.268 1.268
7 C -0.302 4.302
8 H 0.106 0.894
9 N -0.553 5.553
10 C 0.439 3.561
11 O -0.574 6.574
12 C 0.059 3.941
13 O -0.317 6.317
14 C 0.494 3.506
15 O -0.510 6.510
16 C -0.132 4.132
17 C -0.076 4.076
18 C 0.063 3.937
19 O -0.379 6.379
20 C 0.103 3.897
21 C -0.090 4.090
22 C -0.099 4.099
23 C -0.125 4.125
24 C -0.116 4.116
25 C -0.123 4.123
26 C -0.097 4.097
27 C -0.144 4.144
28 C -0.146 4.146
29 H 0.274 0.726
30 H 0.395 0.605
31 H 0.086 0.914
32 H 0.086 0.914
33 H 0.087 0.913
34 H 0.092 0.908
35 H 0.051 0.949
36 H 0.053 0.947
37 H 0.059 0.941
38 H 0.057 0.943
39 H 0.122 0.878
40 H 0.122 0.878
41 H 0.122 0.878
42 H 0.124 0.876
43 H 0.125 0.875
44 H 0.111 0.889
45 H 0.104 0.896
46 H 0.107 0.893
47 H 0.109 0.891
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.271 -24.284 -8.940 26.228
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.538 5.538
2 C -0.178 4.178
3 Si 0.761 3.239
4 H -0.203 1.203
5 H -0.208 1.208
6 H -0.193 1.193
7 C -0.431 4.431
8 H 0.124 0.876
9 N -0.190 5.190
10 C 0.223 3.777
11 O -0.458 6.458
12 C -0.019 4.019
13 O -0.231 6.231
14 C 0.336 3.664
15 O -0.398 6.398
16 C -0.133 4.133
17 C -0.114 4.114
18 C -0.013 4.013
19 O -0.299 6.299
20 C 0.026 3.974
21 C -0.090 4.090
22 C -0.118 4.118
23 C -0.143 4.143
24 C -0.134 4.134
25 C -0.141 4.141
26 C -0.115 4.115
27 C -0.181 4.181
28 C -0.183 4.183
29 H 0.084 0.916
30 H 0.228 0.772
31 H 0.104 0.896
32 H 0.104 0.896
33 H 0.105 0.895
34 H 0.111 0.889
35 H 0.069 0.931
36 H 0.071 0.929
37 H 0.077 0.923
38 H 0.076 0.924
39 H 0.140 0.860
40 H 0.140 0.860
41 H 0.140 0.860
42 H 0.142 0.858
43 H 0.143 0.857
44 H 0.130 0.870
45 H 0.123 0.877
46 H 0.125 0.875
47 H 0.127 0.873
Dipole moment (debyes) X Y Z Total
from point charges 4.774 -24.042 -8.946 26.093
hybrid contribution -0.777 0.900 -0.032 1.189
sum 3.997 -23.143 -8.978 25.143
Atomic orbital electron populations
1.69619 1.05994 1.28457 1.49741 1.25317 0.95700 0.99874 0.96926
0.85795 0.79230 0.80402 0.78508 1.20251 1.20821 1.19268 1.19728
0.93482 0.81738 1.48118 0.87604 1.41703 1.09351 1.04082 1.63912
1.19303 0.88346 0.84037 0.85982 1.90570 1.13362 1.86751 1.55092
1.22786 0.90914 0.84710 1.03447 1.86565 1.40146 1.13925 1.82470
1.22468 0.87460 0.84194 0.72244 1.90644 1.16526 1.86857 1.45797
1.20772 1.02455 0.93039 0.97017 1.20956 0.96766 1.03489 0.90146
1.22492 0.94548 0.99747 0.84522 1.87951 1.41645 1.81123 1.19194
1.21298 0.93610 0.97469 0.84979 1.19618 0.98633 0.95244 0.95505
1.21057 0.95302 0.98160 0.97240 1.21142 0.99416 0.98809 0.94975
1.21211 0.98697 0.94054 0.99411 1.21189 0.96527 0.98631 0.97731
1.21142 0.98834 0.97432 0.94100 1.23188 0.99146 1.01890 0.93896
1.23152 1.00109 0.93398 1.01618 0.91647 0.77181 0.89578 0.89562
0.89491 0.88908 0.93085 0.92903 0.92302 0.92433 0.85988 0.85954
0.86024 0.85791 0.85736 0.87032 0.87713 0.87493 0.87290
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -24.17 13.05 55.50 0.72 -23.45 16
2 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16
3 Si 0.93 20.82 29.55 -169.99 -5.02 15.80 16
4 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16
5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16
6 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16
7 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16
8 H 0.11 3.07 7.16 -52.49 -0.38 2.69 16
9 N -0.55 -14.12 5.29 -10.96 -0.06 -14.17 16
10 C 0.44 10.73 7.86 -10.99 -0.09 10.64 16
11 O -0.57 -16.17 16.08 -14.12 -0.23 -16.39 16
12 C 0.06 1.15 5.94 36.01 0.21 1.36 16
13 O -0.32 -6.09 9.76 -45.91 -0.45 -6.53 16
14 C 0.49 8.01 7.20 36.00 0.26 8.27 16
15 O -0.51 -8.99 16.45 -18.74 -0.31 -9.29 16
16 C -0.13 -1.58 1.99 -155.66 -0.31 -1.89 16
17 C -0.08 -0.87 5.52 -26.73 -0.15 -1.01 16
18 C 0.06 0.68 5.76 37.16 0.21 0.90 16
19 O -0.38 -4.55 10.33 -35.23 -0.36 -4.92 16
20 C 0.10 0.99 6.06 36.00 0.22 1.21 16
21 C -0.09 -0.91 5.51 -104.63 -0.58 -1.48 16
22 C -0.10 -0.89 9.70 -39.58 -0.38 -1.27 16
23 C -0.13 -1.01 10.05 -39.59 -0.40 -1.41 16
24 C -0.12 -0.94 10.05 -39.59 -0.40 -1.34 16
25 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16
26 C -0.10 -0.97 9.70 -39.58 -0.38 -1.35 16
27 C -0.14 -1.39 9.88 -26.73 -0.26 -1.65 16
28 C -0.15 -1.33 9.39 -26.74 -0.25 -1.58 16
29 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16
30 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16
31 H 0.09 1.53 8.13 -51.93 -0.42 1.11 16
32 H 0.09 1.52 8.13 -51.93 -0.42 1.10 16
33 H 0.09 0.82 7.93 -51.93 -0.41 0.41 16
34 H 0.09 1.27 8.12 -51.93 -0.42 0.85 16
35 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16
36 H 0.05 0.46 7.76 -51.93 -0.40 0.06 16
37 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16
38 H 0.06 0.45 8.09 -51.92 -0.42 0.03 16
39 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16
40 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16
41 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16
42 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16
43 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16
44 H 0.11 0.85 8.08 -51.93 -0.42 0.43 16
45 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16
46 H 0.11 1.04 8.00 -51.93 -0.42 0.62 16
47 H 0.11 0.74 7.94 -51.93 -0.41 0.32 16
LS Contribution 411.86 15.07 6.21 6.21
Total: -1.00 -33.84 411.86 -9.39 -43.23
By element:
Atomic # 1 Polarization: 16.55 SS G_CDS: -6.96 Total: 9.59 kcal
Atomic # 6 Polarization: 2.87 SS G_CDS: -2.93 Total: -0.06 kcal
Atomic # 7 Polarization: -38.29 SS G_CDS: 0.67 Total: -37.63 kcal
Atomic # 8 Polarization: -35.79 SS G_CDS: -1.35 Total: -37.14 kcal
Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal
Total LS contribution 6.21 Total: 6.21 kcal
Total: -33.84 -9.39 -43.23 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000770611070.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -76.735 kcal
(2) G-P(sol) polarization free energy of solvation -33.844 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.579 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.234 kcal
(6) G-S(sol) free energy of system = (1) + (5) -119.969 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds