Wall clock time and date at job start Wed Apr 1 2020 04:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86800 * 119.99792 * 2 1 4 4 H 1.48505 * 109.47154 * 269.99966 * 3 2 1 5 5 H 1.48495 * 109.47557 * 30.00487 * 3 2 1 6 6 H 1.48506 * 109.47160 * 150.00492 * 3 2 1 7 7 C 1.38949 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00011 * 179.97438 * 7 2 1 9 9 N 1.37103 * 119.99871 * 359.97438 * 7 2 1 10 10 C 1.34772 * 119.99674 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00154 * 0.02562 * 10 9 7 12 12 C 1.50702 * 120.00065 * 179.97438 * 10 9 7 13 13 O 1.45202 * 109.47207 * 179.97438 * 12 10 9 14 14 C 1.34232 * 116.99521 * 179.97438 * 13 12 10 15 15 O 1.20816 * 120.00065 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99546 * 180.02562 * 14 13 12 17 17 C 1.52995 * 115.55222 * 294.40258 * 16 14 13 18 18 C 1.53001 * 109.47218 * 278.65584 * 17 16 14 19 19 O 1.42900 * 109.47204 * 175.04778 * 18 17 16 20 20 C 1.42900 * 113.99982 * 179.97438 * 19 18 17 21 21 C 1.50697 * 109.47397 * 179.97438 * 20 19 18 22 22 C 1.38239 * 120.00122 * 89.99545 * 21 20 19 23 23 C 1.38234 * 120.00212 * 179.97438 * 22 21 20 24 24 C 1.38232 * 119.99898 * 0.09278 * 23 22 21 25 25 C 1.38234 * 119.99960 * 359.86421 * 24 23 22 26 26 C 1.38231 * 120.00095 * 269.97673 * 21 20 19 27 27 C 1.53004 * 117.51873 * 80.10409 * 16 14 13 28 28 C 1.52992 * 59.99950 * 107.48068 * 27 16 14 29 29 H 0.97003 * 119.99443 * 359.97438 * 1 2 3 30 30 H 0.97000 * 119.99952 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46839 * 60.00005 * 12 10 9 32 32 H 1.08999 * 109.46723 * 300.00009 * 12 10 9 33 33 H 1.08994 * 109.47632 * 158.65113 * 17 16 14 34 34 H 1.08998 * 109.47362 * 38.65557 * 17 16 14 35 35 H 1.08995 * 109.47299 * 55.04270 * 18 17 16 36 36 H 1.09002 * 109.46547 * 295.04922 * 18 17 16 37 37 H 1.08998 * 109.47278 * 59.99589 * 20 19 18 38 38 H 1.09008 * 109.46959 * 300.00015 * 20 19 18 39 39 H 1.08001 * 119.99681 * 359.70884 * 22 21 20 40 40 H 1.08001 * 120.00046 * 179.97438 * 23 22 21 41 41 H 1.07996 * 119.99857 * 179.97438 * 24 23 22 42 42 H 1.07997 * 120.00075 * 180.02562 * 25 24 23 43 43 H 1.08001 * 119.99949 * 0.02562 * 26 21 20 44 44 H 1.09003 * 117.49988 * 214.97439 * 27 16 14 45 45 H 1.09002 * 117.49867 * 359.97438 * 27 16 14 46 46 H 1.09006 * 117.49763 * 252.51138 * 28 27 16 47 47 H 1.09001 * 117.52250 * 107.48345 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4457 2.6527 0.7001 6 1 3.5458 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2437 -4.8630 0.0000 13 8 2.1873 -5.9666 -0.0007 14 6 1.6742 -7.2070 0.0002 15 8 0.4764 -7.3652 0.0012 16 6 2.5922 -8.4021 0.0002 17 6 3.4455 -8.5786 -1.2574 18 6 2.6110 -9.2500 -2.3499 19 8 3.3698 -9.3106 -3.5593 20 6 2.6783 -9.9238 -4.6492 21 6 3.5669 -9.9333 -5.8663 22 6 4.4084 -11.0050 -6.0994 23 6 5.2231 -11.0140 -7.2161 24 6 5.1977 -9.9505 -8.0987 25 6 4.3555 -8.8793 -7.8662 26 6 3.5401 -8.8706 -6.7500 27 6 3.2087 -8.8200 1.3367 28 6 2.1031 -9.6686 0.7055 29 1 -0.4849 0.8401 0.0004 30 1 0.3533 -2.3906 -0.0005 31 1 0.6167 -4.9209 -0.8897 32 1 0.6174 -4.9205 0.8903 33 1 4.3095 -9.2014 -1.0258 34 1 3.7841 -7.6032 -1.6066 35 1 1.7024 -8.6724 -2.5196 36 1 2.3464 -10.2597 -2.0360 37 1 1.7708 -9.3605 -4.8667 38 1 2.4154 -10.9476 -4.3828 39 1 4.4325 -11.8332 -5.4066 40 1 5.8809 -11.8510 -7.3979 41 1 5.8345 -9.9573 -8.9710 42 1 4.3353 -8.0486 -8.5560 43 1 2.8827 -8.0333 -6.5679 44 1 4.2223 -9.2206 1.3200 45 1 2.9507 -8.2302 2.2163 46 1 1.1175 -9.6373 1.1700 47 1 2.3889 -10.6276 0.2734 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770611070.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:57 Heat of formation + Delta-G solvation = -119.968522 kcal Electronic energy + Delta-G solvation = -28888.501646 eV Core-core repulsion = 24616.326795 eV Total energy + Delta-G solvation = -4272.174851 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.66809 -39.64023 -38.52932 -37.95731 -37.18199 -35.95849 -33.99468 -32.58293 -31.37833 -31.17241 -30.60505 -28.60275 -26.33181 -25.20055 -24.20222 -23.06387 -22.85760 -22.38558 -21.59090 -19.64381 -19.56842 -18.06729 -17.49618 -17.06599 -16.83039 -16.64705 -16.27780 -16.19748 -15.72648 -15.60965 -15.04100 -14.83918 -14.54848 -14.37438 -14.06656 -13.83946 -13.69602 -13.43083 -13.17760 -13.03791 -12.83862 -12.52935 -12.28864 -11.98097 -11.85121 -11.77562 -11.61683 -11.60853 -11.26605 -11.21759 -11.13115 -10.83034 -10.45750 -10.43701 -10.41057 -10.29468 -10.15769 -9.83025 -9.60083 -9.18694 -9.11782 -8.51548 -8.07871 -6.49639 -3.91580 0.98187 1.13601 2.20971 2.59757 3.13657 3.14811 3.23735 3.29964 3.46350 3.74016 3.79981 4.10669 4.34614 4.47401 4.52631 4.53977 4.63294 4.71585 4.77211 4.84410 4.91373 4.99698 5.03042 5.08628 5.14739 5.15485 5.22231 5.27547 5.37451 5.39060 5.46066 5.56662 5.64227 5.68512 5.68719 5.76275 5.80745 5.84100 5.96951 6.06105 6.16495 6.23233 6.31838 6.60483 6.70320 6.94495 7.48273 7.83524 7.96576 8.49004 9.07551 9.39658 9.89712 10.67607 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.008771 B = 0.002142 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3191.595326 B =13066.411444 C =15510.762012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.302 4.302 8 H 0.106 0.894 9 N -0.553 5.553 10 C 0.439 3.561 11 O -0.574 6.574 12 C 0.059 3.941 13 O -0.317 6.317 14 C 0.494 3.506 15 O -0.510 6.510 16 C -0.132 4.132 17 C -0.076 4.076 18 C 0.063 3.937 19 O -0.379 6.379 20 C 0.103 3.897 21 C -0.090 4.090 22 C -0.099 4.099 23 C -0.125 4.125 24 C -0.116 4.116 25 C -0.123 4.123 26 C -0.097 4.097 27 C -0.144 4.144 28 C -0.146 4.146 29 H 0.274 0.726 30 H 0.395 0.605 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.111 0.889 45 H 0.104 0.896 46 H 0.107 0.893 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.271 -24.284 -8.940 26.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.431 4.431 8 H 0.124 0.876 9 N -0.190 5.190 10 C 0.223 3.777 11 O -0.458 6.458 12 C -0.019 4.019 13 O -0.231 6.231 14 C 0.336 3.664 15 O -0.398 6.398 16 C -0.133 4.133 17 C -0.114 4.114 18 C -0.013 4.013 19 O -0.299 6.299 20 C 0.026 3.974 21 C -0.090 4.090 22 C -0.118 4.118 23 C -0.143 4.143 24 C -0.134 4.134 25 C -0.141 4.141 26 C -0.115 4.115 27 C -0.181 4.181 28 C -0.183 4.183 29 H 0.084 0.916 30 H 0.228 0.772 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.130 0.870 45 H 0.123 0.877 46 H 0.125 0.875 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.774 -24.042 -8.946 26.093 hybrid contribution -0.777 0.900 -0.032 1.189 sum 3.997 -23.143 -8.978 25.143 Atomic orbital electron populations 1.69619 1.05994 1.28457 1.49741 1.25317 0.95700 0.99874 0.96926 0.85795 0.79230 0.80402 0.78508 1.20251 1.20821 1.19268 1.19728 0.93482 0.81738 1.48118 0.87604 1.41703 1.09351 1.04082 1.63912 1.19303 0.88346 0.84037 0.85982 1.90570 1.13362 1.86751 1.55092 1.22786 0.90914 0.84710 1.03447 1.86565 1.40146 1.13925 1.82470 1.22468 0.87460 0.84194 0.72244 1.90644 1.16526 1.86857 1.45797 1.20772 1.02455 0.93039 0.97017 1.20956 0.96766 1.03489 0.90146 1.22492 0.94548 0.99747 0.84522 1.87951 1.41645 1.81123 1.19194 1.21298 0.93610 0.97469 0.84979 1.19618 0.98633 0.95244 0.95505 1.21057 0.95302 0.98160 0.97240 1.21142 0.99416 0.98809 0.94975 1.21211 0.98697 0.94054 0.99411 1.21189 0.96527 0.98631 0.97731 1.21142 0.98834 0.97432 0.94100 1.23188 0.99146 1.01890 0.93896 1.23152 1.00109 0.93398 1.01618 0.91647 0.77181 0.89578 0.89562 0.89491 0.88908 0.93085 0.92903 0.92302 0.92433 0.85988 0.85954 0.86024 0.85791 0.85736 0.87032 0.87713 0.87493 0.87290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.17 13.05 55.50 0.72 -23.45 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 20.82 29.55 -169.99 -5.02 15.80 16 4 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 7 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 8 H 0.11 3.07 7.16 -52.49 -0.38 2.69 16 9 N -0.55 -14.12 5.29 -10.96 -0.06 -14.17 16 10 C 0.44 10.73 7.86 -10.99 -0.09 10.64 16 11 O -0.57 -16.17 16.08 -14.12 -0.23 -16.39 16 12 C 0.06 1.15 5.94 36.01 0.21 1.36 16 13 O -0.32 -6.09 9.76 -45.91 -0.45 -6.53 16 14 C 0.49 8.01 7.20 36.00 0.26 8.27 16 15 O -0.51 -8.99 16.45 -18.74 -0.31 -9.29 16 16 C -0.13 -1.58 1.99 -155.66 -0.31 -1.89 16 17 C -0.08 -0.87 5.52 -26.73 -0.15 -1.01 16 18 C 0.06 0.68 5.76 37.16 0.21 0.90 16 19 O -0.38 -4.55 10.33 -35.23 -0.36 -4.92 16 20 C 0.10 0.99 6.06 36.00 0.22 1.21 16 21 C -0.09 -0.91 5.51 -104.63 -0.58 -1.48 16 22 C -0.10 -0.89 9.70 -39.58 -0.38 -1.27 16 23 C -0.13 -1.01 10.05 -39.59 -0.40 -1.41 16 24 C -0.12 -0.94 10.05 -39.59 -0.40 -1.34 16 25 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 26 C -0.10 -0.97 9.70 -39.58 -0.38 -1.35 16 27 C -0.14 -1.39 9.88 -26.73 -0.26 -1.65 16 28 C -0.15 -1.33 9.39 -26.74 -0.25 -1.58 16 29 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 31 H 0.09 1.53 8.13 -51.93 -0.42 1.11 16 32 H 0.09 1.52 8.13 -51.93 -0.42 1.10 16 33 H 0.09 0.82 7.93 -51.93 -0.41 0.41 16 34 H 0.09 1.27 8.12 -51.93 -0.42 0.85 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.46 7.76 -51.93 -0.40 0.06 16 37 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 38 H 0.06 0.45 8.09 -51.92 -0.42 0.03 16 39 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 42 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.11 0.85 8.08 -51.93 -0.42 0.43 16 45 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.11 1.04 8.00 -51.93 -0.42 0.62 16 47 H 0.11 0.74 7.94 -51.93 -0.41 0.32 16 LS Contribution 411.86 15.07 6.21 6.21 Total: -1.00 -33.84 411.86 -9.39 -43.23 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -6.96 Total: 9.59 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -2.93 Total: -0.06 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.67 Total: -37.63 kcal Atomic # 8 Polarization: -35.79 SS G_CDS: -1.35 Total: -37.14 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.84 -9.39 -43.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770611070.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.735 kcal (2) G-P(sol) polarization free energy of solvation -33.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds