Wall clock time and date at job start Wed Apr 1 2020 04:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86800 * 119.99792 * 2 1 4 4 H 1.48505 * 109.47154 * 269.99966 * 3 2 1 5 5 H 1.48495 * 109.47557 * 30.00487 * 3 2 1 6 6 H 1.48506 * 109.47160 * 150.00492 * 3 2 1 7 7 C 1.38949 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00011 * 179.97438 * 7 2 1 9 9 N 1.37103 * 119.99871 * 359.97438 * 7 2 1 10 10 C 1.34772 * 119.99674 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00154 * 0.02562 * 10 9 7 12 12 C 1.50702 * 120.00065 * 179.97438 * 10 9 7 13 13 O 1.45202 * 109.47207 * 179.97438 * 12 10 9 14 14 C 1.34232 * 116.99521 * 179.97438 * 13 12 10 15 15 O 1.20816 * 120.00065 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99546 * 180.02562 * 14 13 12 17 17 C 1.52995 * 115.55222 * 294.40258 * 16 14 13 18 18 C 1.53001 * 109.47218 * 278.65584 * 17 16 14 19 19 O 1.42900 * 109.47204 * 175.04778 * 18 17 16 20 20 C 1.42900 * 113.99982 * 179.97438 * 19 18 17 21 21 C 1.50697 * 109.47397 * 179.97438 * 20 19 18 22 22 C 1.38239 * 120.00122 * 89.99545 * 21 20 19 23 23 C 1.38234 * 120.00212 * 179.97438 * 22 21 20 24 24 C 1.38232 * 119.99898 * 0.09278 * 23 22 21 25 25 C 1.38234 * 119.99960 * 359.86421 * 24 23 22 26 26 C 1.38231 * 120.00095 * 269.97673 * 21 20 19 27 27 C 1.53004 * 117.51873 * 80.10409 * 16 14 13 28 28 C 1.52992 * 59.99950 * 107.48068 * 27 16 14 29 29 H 0.97003 * 119.99443 * 359.97438 * 1 2 3 30 30 H 0.97000 * 119.99952 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46839 * 60.00005 * 12 10 9 32 32 H 1.08999 * 109.46723 * 300.00009 * 12 10 9 33 33 H 1.08994 * 109.47632 * 158.65113 * 17 16 14 34 34 H 1.08998 * 109.47362 * 38.65557 * 17 16 14 35 35 H 1.08995 * 109.47299 * 55.04270 * 18 17 16 36 36 H 1.09002 * 109.46547 * 295.04922 * 18 17 16 37 37 H 1.08998 * 109.47278 * 59.99589 * 20 19 18 38 38 H 1.09008 * 109.46959 * 300.00015 * 20 19 18 39 39 H 1.08001 * 119.99681 * 359.70884 * 22 21 20 40 40 H 1.08001 * 120.00046 * 179.97438 * 23 22 21 41 41 H 1.07996 * 119.99857 * 179.97438 * 24 23 22 42 42 H 1.07997 * 120.00075 * 180.02562 * 25 24 23 43 43 H 1.08001 * 119.99949 * 0.02562 * 26 21 20 44 44 H 1.09003 * 117.49988 * 214.97439 * 27 16 14 45 45 H 1.09002 * 117.49867 * 359.97438 * 27 16 14 46 46 H 1.09006 * 117.49763 * 252.51138 * 28 27 16 47 47 H 1.09001 * 117.52250 * 107.48345 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4457 2.6527 0.7001 6 1 3.5458 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2437 -4.8630 0.0000 13 8 2.1873 -5.9666 -0.0007 14 6 1.6742 -7.2070 0.0002 15 8 0.4764 -7.3652 0.0012 16 6 2.5922 -8.4021 0.0002 17 6 3.4455 -8.5786 -1.2574 18 6 2.6110 -9.2500 -2.3499 19 8 3.3698 -9.3106 -3.5593 20 6 2.6783 -9.9238 -4.6492 21 6 3.5669 -9.9333 -5.8663 22 6 4.4084 -11.0050 -6.0994 23 6 5.2231 -11.0140 -7.2161 24 6 5.1977 -9.9505 -8.0987 25 6 4.3555 -8.8793 -7.8662 26 6 3.5401 -8.8706 -6.7500 27 6 3.2087 -8.8200 1.3367 28 6 2.1031 -9.6686 0.7055 29 1 -0.4849 0.8401 0.0004 30 1 0.3533 -2.3906 -0.0005 31 1 0.6167 -4.9209 -0.8897 32 1 0.6174 -4.9205 0.8903 33 1 4.3095 -9.2014 -1.0258 34 1 3.7841 -7.6032 -1.6066 35 1 1.7024 -8.6724 -2.5196 36 1 2.3464 -10.2597 -2.0360 37 1 1.7708 -9.3605 -4.8667 38 1 2.4154 -10.9476 -4.3828 39 1 4.4325 -11.8332 -5.4066 40 1 5.8809 -11.8510 -7.3979 41 1 5.8345 -9.9573 -8.9710 42 1 4.3353 -8.0486 -8.5560 43 1 2.8827 -8.0333 -6.5679 44 1 4.2223 -9.2206 1.3200 45 1 2.9507 -8.2302 2.2163 46 1 1.1175 -9.6373 1.1700 47 1 2.3889 -10.6276 0.2734 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770611070.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:56 Heat of formation + Delta-G solvation = -138.826865 kcal Electronic energy + Delta-G solvation = -28889.319405 eV Core-core repulsion = 24616.326795 eV Total energy + Delta-G solvation = -4272.992610 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.94702 -40.35101 -40.18099 -39.08286 -38.18237 -37.32818 -36.06818 -33.45270 -33.28608 -31.81297 -31.40689 -30.27393 -27.17621 -26.78619 -25.53582 -24.01174 -23.50374 -23.20873 -22.26483 -21.49433 -20.83425 -20.11159 -18.58043 -18.09560 -17.90907 -17.75345 -17.52985 -17.34010 -17.03551 -16.57156 -16.33939 -15.94574 -15.90786 -15.70379 -15.29957 -15.08624 -14.87544 -14.33993 -14.16571 -13.93460 -13.93153 -13.72783 -13.58774 -13.52259 -13.25906 -12.96036 -12.63707 -12.58942 -12.50389 -12.35918 -12.13448 -11.94692 -11.93291 -11.90051 -11.75071 -11.60836 -11.41862 -11.09853 -10.64518 -10.55327 -10.15098 -9.84709 -9.78643 -8.55039 -6.05968 0.31090 0.47575 0.95485 1.27580 1.33842 1.42516 1.55721 1.82908 2.27321 2.39004 2.69238 2.96753 3.06336 3.10021 3.49989 3.56600 3.77374 3.81436 3.88425 3.96815 3.97890 4.08062 4.13083 4.13946 4.16701 4.23846 4.30406 4.32716 4.41618 4.42039 4.62983 4.70569 4.73937 4.74342 4.91693 4.93093 5.04692 5.05928 5.13246 5.16162 5.26600 5.34461 5.52719 5.59027 5.64236 5.85653 6.07117 6.16221 6.41554 6.56808 6.99675 7.35749 7.89375 8.61970 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.008771 B = 0.002142 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3191.595326 B =13066.411444 C =15510.762012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.009 4.009 3 Si 0.999 3.001 4 H -0.269 1.269 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.339 4.339 8 H 0.084 0.916 9 N -0.557 5.557 10 C 0.436 3.564 11 O -0.617 6.617 12 C 0.069 3.931 13 O -0.339 6.339 14 C 0.491 3.509 15 O -0.527 6.527 16 C -0.156 4.156 17 C -0.070 4.070 18 C 0.066 3.934 19 O -0.400 6.400 20 C 0.100 3.900 21 C -0.109 4.109 22 C -0.108 4.108 23 C -0.129 4.129 24 C -0.121 4.121 25 C -0.135 4.135 26 C -0.121 4.121 27 C -0.137 4.137 28 C -0.122 4.122 29 H 0.281 0.719 30 H 0.400 0.600 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.059 0.941 35 H 0.031 0.969 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.139 0.861 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.136 0.864 43 H 0.119 0.881 44 H 0.138 0.862 45 H 0.096 0.904 46 H 0.101 0.899 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.778 -26.087 -8.992 28.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.210 4.210 3 Si 0.822 3.178 4 H -0.194 1.194 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.102 0.898 9 N -0.194 5.194 10 C 0.222 3.778 11 O -0.504 6.504 12 C -0.008 4.008 13 O -0.254 6.254 14 C 0.335 3.665 15 O -0.417 6.417 16 C -0.158 4.158 17 C -0.107 4.107 18 C -0.011 4.011 19 O -0.321 6.321 20 C 0.024 3.976 21 C -0.109 4.109 22 C -0.126 4.126 23 C -0.147 4.147 24 C -0.139 4.139 25 C -0.152 4.152 26 C -0.139 4.139 27 C -0.174 4.174 28 C -0.158 4.158 29 H 0.091 0.909 30 H 0.234 0.766 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.130 0.870 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.100 0.900 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.157 0.843 40 H 0.165 0.835 41 H 0.163 0.837 42 H 0.154 0.846 43 H 0.137 0.863 44 H 0.156 0.844 45 H 0.115 0.885 46 H 0.119 0.881 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.238 -25.861 -9.000 27.879 hybrid contribution -0.956 1.417 -0.039 1.710 sum 4.282 -24.444 -9.039 26.411 Atomic orbital electron populations 1.69676 1.06951 1.29782 1.49039 1.26157 0.96629 1.02640 0.95584 0.84841 0.77899 0.76238 0.78837 1.19424 1.19269 1.19523 1.19724 0.92938 0.83337 1.50757 0.89796 1.41738 1.09538 1.04171 1.63955 1.20063 0.88079 0.85341 0.84277 1.90530 1.15424 1.87664 1.56734 1.22543 0.90281 0.82802 1.05176 1.86579 1.40713 1.15021 1.83111 1.23357 0.88094 0.83948 0.71056 1.90619 1.17508 1.86856 1.46673 1.20898 1.03607 0.92595 0.98665 1.20902 0.97523 1.02230 0.90035 1.22512 0.93488 1.00897 0.84162 1.87918 1.42464 1.81701 1.19989 1.21421 0.93303 0.98406 0.84427 1.19803 0.99497 0.95863 0.95754 1.21327 0.95051 0.98251 0.97946 1.21506 0.99267 0.99468 0.94422 1.21556 0.98501 0.93638 1.00171 1.21440 0.96556 0.99573 0.97674 1.21297 0.99695 0.97758 0.95125 1.23374 1.00823 1.01287 0.91906 1.23321 0.99691 0.93230 0.99603 0.90907 0.76571 0.87912 0.87524 0.86999 0.92256 0.95041 0.89990 0.92641 0.90255 0.84338 0.83475 0.83739 0.84566 0.86305 0.84438 0.88534 0.88097 0.84002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.02 13.05 21.66 0.28 -48.73 16 2 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 3 Si 1.00 42.48 29.55 68.60 2.03 44.51 16 4 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 7 C -0.34 -19.32 9.68 84.04 0.81 -18.51 16 8 H 0.08 5.08 7.16 -2.91 -0.02 5.06 16 9 N -0.56 -29.23 5.29 -306.98 -1.62 -30.85 16 10 C 0.44 22.03 7.86 87.66 0.69 22.72 16 11 O -0.62 -36.20 16.08 15.71 0.25 -35.95 16 12 C 0.07 2.75 5.94 71.24 0.42 3.17 16 13 O -0.34 -13.34 9.76 -45.08 -0.44 -13.78 16 14 C 0.49 15.99 7.20 71.24 0.51 16.50 16 15 O -0.53 -18.52 16.45 21.99 0.36 -18.15 16 16 C -0.16 -3.59 1.99 -52.93 -0.11 -3.69 16 17 C -0.07 -1.53 5.52 30.59 0.17 -1.36 16 18 C 0.07 1.36 5.76 71.98 0.41 1.77 16 19 O -0.40 -9.48 10.33 -148.98 -1.54 -11.02 16 20 C 0.10 1.91 6.06 71.23 0.43 2.34 16 21 C -0.11 -2.18 5.51 -19.87 -0.11 -2.29 16 22 C -0.11 -1.79 9.70 22.27 0.22 -1.57 16 23 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 24 C -0.12 -1.80 10.05 22.27 0.22 -1.57 16 25 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 26 C -0.12 -2.49 9.70 22.27 0.22 -2.28 16 27 C -0.14 -2.33 9.88 30.59 0.30 -2.03 16 28 C -0.12 -1.87 9.39 30.59 0.29 -1.58 16 29 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 30 H 0.40 19.75 7.90 -92.71 -0.73 19.02 16 31 H 0.10 3.71 8.13 -2.39 -0.02 3.69 16 32 H 0.11 3.77 8.13 -2.39 -0.02 3.75 16 33 H 0.11 1.86 7.93 -2.39 -0.02 1.84 16 34 H 0.06 1.69 8.12 -2.39 -0.02 1.67 16 35 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.08 1.20 7.76 -2.39 -0.02 1.18 16 37 H 0.06 1.05 8.08 -2.39 -0.02 1.03 16 38 H 0.08 1.12 8.09 -2.38 -0.02 1.10 16 39 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 40 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 41 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 42 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 43 H 0.12 2.42 8.06 -2.91 -0.02 2.40 16 44 H 0.14 1.62 8.08 -2.39 -0.02 1.60 16 45 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.10 1.72 8.00 -2.38 -0.02 1.70 16 47 H 0.14 1.26 7.94 -2.39 -0.02 1.24 16 Total: -1.00 -75.09 411.86 4.97 -70.12 By element: Atomic # 1 Polarization: 35.79 SS G_CDS: 0.25 Total: 36.04 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 5.40 Total: 7.83 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -1.34 Total: -79.59 kcal Atomic # 8 Polarization: -77.54 SS G_CDS: -1.36 Total: -78.91 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -75.09 4.97 -70.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770611070.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.710 kcal (2) G-P(sol) polarization free energy of solvation -75.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds