Wall clock time and date at job start Wed Apr 1 2020 04:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86798 * 120.00223 * 2 1 4 4 H 1.48503 * 109.47009 * 269.99960 * 3 2 1 5 5 H 1.48504 * 109.46964 * 29.99404 * 3 2 1 6 6 H 1.48495 * 109.47412 * 149.99802 * 3 2 1 7 7 C 1.38657 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00283 * 180.02562 * 7 2 1 9 9 O 1.34835 * 119.99712 * 0.02562 * 7 2 1 10 10 C 1.35749 * 116.99650 * 185.05912 * 9 7 2 11 11 C 1.38881 * 120.07213 * 354.46407 * 10 9 7 12 12 C 1.38092 * 119.93310 * 179.97438 * 11 10 9 13 13 C 1.38305 * 120.07022 * 359.97438 * 12 11 10 14 14 C 1.50695 * 119.93141 * 179.97438 * 13 12 11 15 15 O 1.45208 * 109.47083 * 89.99819 * 14 13 12 16 16 C 1.34228 * 116.99980 * 180.02562 * 15 14 13 17 17 O 1.20829 * 120.00129 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00115 * 179.97438 * 16 15 14 19 19 H 1.08998 * 109.47138 * 59.99798 * 18 16 15 20 20 C 1.52995 * 109.46823 * 299.99670 * 18 16 15 21 21 C 1.53000 * 109.47231 * 179.97438 * 20 18 16 22 22 C 1.53010 * 109.46987 * 59.99890 * 21 20 18 23 23 C 1.52998 * 109.47045 * 300.00439 * 22 21 20 24 24 H 1.09003 * 109.46842 * 300.00068 * 23 22 21 25 25 C 1.50697 * 109.46919 * 180.02562 * 23 22 21 26 26 N 1.34777 * 120.00071 * 60.00059 * 25 23 22 27 27 O 1.21285 * 119.99866 * 239.99864 * 25 23 22 28 28 C 1.52998 * 109.47033 * 179.97438 * 18 16 15 29 29 C 1.38301 * 120.13652 * 0.27334 * 13 12 11 30 30 C 1.38099 * 120.06899 * 359.48911 * 29 13 12 31 31 H 0.96998 * 119.99850 * 0.02562 * 1 2 3 32 32 H 1.08007 * 120.03175 * 359.97438 * 11 10 9 33 33 H 1.08001 * 119.97007 * 179.97438 * 12 11 10 34 34 H 1.08997 * 109.47666 * 329.99684 * 14 13 12 35 35 H 1.09000 * 109.47230 * 209.99544 * 14 13 12 36 36 H 1.09005 * 109.47560 * 59.99853 * 20 18 16 37 37 H 1.08998 * 109.47368 * 299.99988 * 20 18 16 38 38 H 1.08998 * 109.46998 * 300.00292 * 21 20 18 39 39 H 1.08994 * 109.47587 * 179.97438 * 21 20 18 40 40 H 1.09001 * 109.46852 * 180.02562 * 22 21 20 41 41 H 1.08998 * 109.46923 * 60.00356 * 22 21 20 42 42 H 0.96994 * 120.00378 * 359.97438 * 26 25 23 43 43 H 0.96997 * 119.99653 * 180.02562 * 26 25 23 44 44 H 1.09003 * 109.47467 * 59.99924 * 28 18 16 45 45 H 1.08999 * 109.47477 * 300.00137 * 28 18 16 46 46 H 1.08003 * 119.96613 * 179.72960 * 29 13 12 47 47 H 1.08002 * 120.03797 * 180.25834 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4470 2.6527 0.6999 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2009 0.0010 9 8 1.3346 -2.3685 0.0005 10 6 2.0698 -3.5046 0.1077 11 6 3.4571 -3.4395 0.0953 12 6 4.2022 -4.5970 0.2051 13 6 3.5684 -5.8201 0.3279 14 6 4.3845 -7.0813 0.4469 15 8 4.6537 -7.3533 1.8476 16 6 5.3758 -8.4496 2.1277 17 8 5.7695 -9.1588 1.2322 18 6 5.6954 -8.7959 3.5591 19 1 4.7683 -8.9426 4.1132 20 6 6.4939 -7.6554 4.1936 21 6 6.8179 -8.0067 5.6470 22 6 7.6452 -9.2932 5.6886 23 6 6.8468 -10.4337 5.0540 24 1 5.9194 -10.5799 5.6078 25 6 7.6613 -11.7008 5.0954 26 7 8.0642 -12.2046 6.2788 27 8 7.9543 -12.2674 4.0639 28 6 6.5224 -10.0825 3.6000 29 6 2.1871 -5.8888 0.3354 30 6 1.4363 -4.7344 0.2309 31 1 -0.4850 0.8400 -0.0004 32 1 3.9526 -2.4846 -0.0001 33 1 5.2810 -4.5471 0.1951 34 1 5.3268 -6.9561 -0.0865 35 1 3.8305 -7.9147 0.0149 36 1 5.9044 -6.7390 4.1644 37 1 7.4210 -7.5088 3.6395 38 1 5.8906 -8.1531 6.2008 39 1 7.3871 -7.1945 6.0990 40 1 7.8757 -9.5437 6.7241 41 1 8.5725 -9.1468 5.1347 42 1 7.8302 -11.7513 7.1038 43 1 8.5888 -13.0200 6.3054 44 1 7.4496 -9.9363 3.0458 45 1 5.9533 -10.8948 3.1480 46 1 1.6950 -6.8458 0.4270 47 1 0.3577 -4.7882 0.2410 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787820804.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:25 Heat of formation + Delta-G solvation = -153.176752 kcal Electronic energy + Delta-G solvation = -29252.819356 eV Core-core repulsion = 24979.204488 eV Total energy + Delta-G solvation = -4273.614868 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.94860 -40.04584 -39.09176 -37.84418 -36.88288 -35.97044 -34.17085 -32.45955 -31.80293 -31.27540 -30.43817 -30.21609 -26.22502 -25.13489 -24.45084 -23.80955 -22.06329 -21.58844 -20.66595 -20.47004 -20.01377 -18.18023 -18.07630 -17.30028 -17.20355 -17.02071 -16.27996 -16.22649 -15.60167 -15.12464 -14.75437 -14.66619 -14.46168 -14.39966 -14.05200 -13.73469 -13.71973 -13.55900 -13.10367 -12.84302 -12.80045 -12.75518 -12.65387 -12.20986 -11.84087 -11.72394 -11.59339 -11.39850 -11.17662 -11.09422 -11.00847 -10.83717 -10.79172 -10.68830 -10.49926 -10.41169 -10.23153 -10.14069 -10.09545 -9.41745 -8.91358 -8.27224 -7.33452 -6.52993 -4.11678 1.95186 2.15002 2.23593 2.24666 2.86458 3.08506 3.09547 3.14400 3.18489 3.90477 4.14451 4.23861 4.25934 4.48819 4.59014 4.67115 4.80095 4.86216 4.90469 4.99813 5.02187 5.11871 5.16360 5.19928 5.22371 5.25990 5.50202 5.54285 5.56950 5.64558 5.67004 5.75356 5.77031 5.82396 5.93024 6.03900 6.12654 6.33065 6.34255 6.57286 6.59906 6.80621 6.87900 6.96661 7.14879 7.26880 7.35085 7.71293 7.83614 7.86045 7.91801 8.92266 9.60271 10.64461 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.021092 B = 0.001768 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.168537 B =15835.212810 C =16579.172151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.393 4.393 8 H 0.094 0.906 9 O -0.172 6.172 10 C 0.163 3.837 11 C -0.238 4.238 12 C -0.045 4.045 13 C -0.203 4.203 14 C 0.129 3.871 15 O -0.349 6.349 16 C 0.461 3.539 17 O -0.511 6.511 18 C -0.080 4.080 19 H 0.109 0.891 20 C -0.115 4.115 21 C -0.115 4.115 22 C -0.113 4.113 23 C -0.107 4.107 24 H 0.102 0.898 25 C 0.521 3.479 26 N -0.858 5.858 27 O -0.537 6.537 28 C -0.085 4.085 29 C -0.049 4.049 30 C -0.196 4.196 31 H 0.271 0.729 32 H 0.130 0.870 33 H 0.108 0.892 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.401 0.599 43 H 0.400 0.600 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.113 0.887 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.009 -17.996 15.060 27.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.075 6.075 10 C 0.108 3.892 11 C -0.257 4.257 12 C -0.063 4.063 13 C -0.204 4.204 14 C 0.056 3.944 15 O -0.266 6.266 16 C 0.303 3.697 17 O -0.399 6.399 18 C -0.099 4.099 19 H 0.127 0.873 20 C -0.153 4.153 21 C -0.153 4.153 22 C -0.151 4.151 23 C -0.129 4.129 24 H 0.120 0.880 25 C 0.306 3.694 26 N -0.421 5.421 27 O -0.412 6.412 28 C -0.123 4.123 29 C -0.067 4.067 30 C -0.215 4.215 31 H 0.081 0.919 32 H 0.147 0.853 33 H 0.126 0.874 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.229 0.771 43 H 0.231 0.769 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.131 0.869 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 13.750 -18.169 13.950 26.717 hybrid contribution 0.560 0.635 0.304 0.900 sum 14.310 -17.534 14.254 26.747 Atomic orbital electron populations 1.70037 1.06007 1.27872 1.45383 1.25324 0.95869 0.98938 0.96334 0.85690 0.78944 0.79891 0.78795 1.19800 1.20178 1.19112 1.21369 0.91899 0.80708 1.52970 0.88878 1.83979 1.34517 1.11566 1.77409 1.19439 0.90318 0.88041 0.91404 1.21140 0.93776 0.98865 1.11916 1.20615 0.98406 0.91516 0.95798 1.18868 0.93334 0.92881 1.15319 1.21699 0.98916 0.95823 0.77951 1.86647 1.65331 1.42752 1.31829 1.23589 0.75094 0.78712 0.92271 1.90669 1.50128 1.50364 1.48770 1.21064 1.01419 0.97176 0.90210 0.87308 1.21573 1.00462 0.97425 0.95825 1.21525 1.00449 0.96978 0.96329 1.21598 0.98978 0.93992 1.00519 1.21357 0.99543 0.92748 0.99227 0.88005 1.20645 0.79361 0.86057 0.83387 1.43902 1.58646 1.30805 1.08776 1.90787 1.56048 1.61275 1.33137 1.21231 1.01316 0.95651 0.94060 1.20511 0.92631 0.96967 0.96626 1.20198 0.99694 0.90150 1.11460 0.91874 0.85279 0.87351 0.91287 0.91243 0.89713 0.91173 0.91099 0.90708 0.91240 0.91038 0.77064 0.76894 0.90073 0.90161 0.86906 0.86216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.64 13.67 55.48 0.76 -23.88 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.01 29.55 -169.99 -5.02 14.99 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.39 -10.74 9.49 30.89 0.29 -10.44 16 8 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 9 O -0.17 -4.81 9.76 0.04 0.00 -4.81 16 10 C 0.16 3.85 6.65 -39.10 -0.26 3.59 16 11 C -0.24 -5.05 9.17 -39.40 -0.36 -5.41 16 12 C -0.04 -0.82 9.69 -39.61 -0.38 -1.20 16 13 C -0.20 -3.52 5.52 -104.58 -0.58 -4.10 16 14 C 0.13 1.94 5.59 36.00 0.20 2.14 16 15 O -0.35 -5.09 10.11 -39.25 -0.40 -5.49 16 16 C 0.46 6.13 7.26 36.01 0.26 6.39 16 17 O -0.51 -8.22 15.73 -18.75 -0.29 -8.52 16 18 C -0.08 -0.73 2.63 -91.78 -0.24 -0.97 16 19 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 20 C -0.12 -0.90 5.14 -26.73 -0.14 -1.04 16 21 C -0.12 -0.59 5.92 -26.73 -0.16 -0.75 16 22 C -0.11 -0.53 5.10 -26.73 -0.14 -0.67 16 23 C -0.11 -0.67 2.52 -91.75 -0.23 -0.91 16 24 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 25 C 0.52 4.20 7.43 -10.99 -0.08 4.12 16 26 N -0.86 -3.38 8.77 31.22 0.27 -3.11 16 27 O -0.54 -7.07 16.82 5.55 0.09 -6.98 16 28 C -0.08 -0.80 3.07 -26.71 -0.08 -0.89 16 29 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 30 C -0.20 -4.05 9.99 -39.39 -0.39 -4.44 16 31 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.13 2.72 5.64 -52.48 -0.30 2.43 16 33 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 35 H 0.07 0.99 8.07 -51.93 -0.42 0.58 16 36 H 0.08 0.73 8.11 -51.93 -0.42 0.31 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.17 7.56 -51.93 -0.39 -0.22 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.40 0.36 8.25 -40.82 -0.34 0.02 16 43 H 0.40 1.35 8.93 -40.82 -0.36 0.99 16 44 H 0.08 0.93 8.06 -51.93 -0.42 0.51 16 45 H 0.08 0.90 8.06 -51.93 -0.42 0.48 16 46 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 47 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 393.37 15.07 5.93 5.93 Total: -1.00 -34.86 393.37 -8.13 -42.99 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -6.70 Total: 3.71 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -2.77 Total: -14.84 kcal Atomic # 7 Polarization: -28.03 SS G_CDS: 1.03 Total: -26.99 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.60 Total: -25.79 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.86 -8.13 -42.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787820804.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.187 kcal (2) G-P(sol) polarization free energy of solvation -34.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds