Wall clock time and date at job start Wed Apr 1 2020 04:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86798 * 120.00223 * 2 1 4 4 H 1.48503 * 109.47009 * 269.99960 * 3 2 1 5 5 H 1.48504 * 109.46964 * 29.99404 * 3 2 1 6 6 H 1.48495 * 109.47412 * 149.99802 * 3 2 1 7 7 C 1.38657 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00283 * 180.02562 * 7 2 1 9 9 O 1.34835 * 119.99712 * 0.02562 * 7 2 1 10 10 C 1.35749 * 116.99650 * 185.05912 * 9 7 2 11 11 C 1.38881 * 120.07213 * 354.46407 * 10 9 7 12 12 C 1.38092 * 119.93310 * 179.97438 * 11 10 9 13 13 C 1.38305 * 120.07022 * 359.97438 * 12 11 10 14 14 C 1.50695 * 119.93141 * 179.97438 * 13 12 11 15 15 O 1.45208 * 109.47083 * 89.99819 * 14 13 12 16 16 C 1.34228 * 116.99980 * 180.02562 * 15 14 13 17 17 O 1.20829 * 120.00129 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00115 * 179.97438 * 16 15 14 19 19 H 1.08998 * 109.47138 * 59.99798 * 18 16 15 20 20 C 1.52995 * 109.46823 * 299.99670 * 18 16 15 21 21 C 1.53000 * 109.47231 * 179.97438 * 20 18 16 22 22 C 1.53010 * 109.46987 * 59.99890 * 21 20 18 23 23 C 1.52998 * 109.47045 * 300.00439 * 22 21 20 24 24 H 1.09003 * 109.46842 * 300.00068 * 23 22 21 25 25 C 1.50697 * 109.46919 * 180.02562 * 23 22 21 26 26 N 1.34777 * 120.00071 * 60.00059 * 25 23 22 27 27 O 1.21285 * 119.99866 * 239.99864 * 25 23 22 28 28 C 1.52998 * 109.47033 * 179.97438 * 18 16 15 29 29 C 1.38301 * 120.13652 * 0.27334 * 13 12 11 30 30 C 1.38099 * 120.06899 * 359.48911 * 29 13 12 31 31 H 0.96998 * 119.99850 * 0.02562 * 1 2 3 32 32 H 1.08007 * 120.03175 * 359.97438 * 11 10 9 33 33 H 1.08001 * 119.97007 * 179.97438 * 12 11 10 34 34 H 1.08997 * 109.47666 * 329.99684 * 14 13 12 35 35 H 1.09000 * 109.47230 * 209.99544 * 14 13 12 36 36 H 1.09005 * 109.47560 * 59.99853 * 20 18 16 37 37 H 1.08998 * 109.47368 * 299.99988 * 20 18 16 38 38 H 1.08998 * 109.46998 * 300.00292 * 21 20 18 39 39 H 1.08994 * 109.47587 * 179.97438 * 21 20 18 40 40 H 1.09001 * 109.46852 * 180.02562 * 22 21 20 41 41 H 1.08998 * 109.46923 * 60.00356 * 22 21 20 42 42 H 0.96994 * 120.00378 * 359.97438 * 26 25 23 43 43 H 0.96997 * 119.99653 * 180.02562 * 26 25 23 44 44 H 1.09003 * 109.47467 * 59.99924 * 28 18 16 45 45 H 1.08999 * 109.47477 * 300.00137 * 28 18 16 46 46 H 1.08003 * 119.96613 * 179.72960 * 29 13 12 47 47 H 1.08002 * 120.03797 * 180.25834 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4470 2.6527 0.6999 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2009 0.0010 9 8 1.3346 -2.3685 0.0005 10 6 2.0698 -3.5046 0.1077 11 6 3.4571 -3.4395 0.0953 12 6 4.2022 -4.5970 0.2051 13 6 3.5684 -5.8201 0.3279 14 6 4.3845 -7.0813 0.4469 15 8 4.6537 -7.3533 1.8476 16 6 5.3758 -8.4496 2.1277 17 8 5.7695 -9.1588 1.2322 18 6 5.6954 -8.7959 3.5591 19 1 4.7683 -8.9426 4.1132 20 6 6.4939 -7.6554 4.1936 21 6 6.8179 -8.0067 5.6470 22 6 7.6452 -9.2932 5.6886 23 6 6.8468 -10.4337 5.0540 24 1 5.9194 -10.5799 5.6078 25 6 7.6613 -11.7008 5.0954 26 7 8.0642 -12.2046 6.2788 27 8 7.9543 -12.2674 4.0639 28 6 6.5224 -10.0825 3.6000 29 6 2.1871 -5.8888 0.3354 30 6 1.4363 -4.7344 0.2309 31 1 -0.4850 0.8400 -0.0004 32 1 3.9526 -2.4846 -0.0001 33 1 5.2810 -4.5471 0.1951 34 1 5.3268 -6.9561 -0.0865 35 1 3.8305 -7.9147 0.0149 36 1 5.9044 -6.7390 4.1644 37 1 7.4210 -7.5088 3.6395 38 1 5.8906 -8.1531 6.2008 39 1 7.3871 -7.1945 6.0990 40 1 7.8757 -9.5437 6.7241 41 1 8.5725 -9.1468 5.1347 42 1 7.8302 -11.7513 7.1038 43 1 8.5888 -13.0200 6.3054 44 1 7.4496 -9.9363 3.0458 45 1 5.9533 -10.8948 3.1480 46 1 1.6950 -6.8458 0.4270 47 1 0.3577 -4.7882 0.2410 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787820804.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:24 Heat of formation + Delta-G solvation = -176.561640 kcal Electronic energy + Delta-G solvation = -29253.833401 eV Core-core repulsion = 24979.204488 eV Total energy + Delta-G solvation = -4274.628913 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.88154 -40.94639 -40.68467 -38.79699 -38.22794 -37.26565 -34.74393 -34.36729 -32.61601 -31.91032 -31.84612 -31.70830 -27.86832 -26.71958 -25.08290 -24.70921 -23.69347 -22.32755 -22.08666 -21.31588 -20.63745 -19.90254 -18.94093 -18.88274 -18.20234 -17.73830 -17.45314 -17.19484 -16.41066 -16.37844 -16.15384 -15.88786 -15.64857 -15.56817 -15.16842 -15.03479 -14.83574 -14.58724 -14.37743 -14.14226 -13.90628 -13.82701 -13.51863 -13.43820 -13.27741 -13.03235 -12.62385 -12.46230 -12.39950 -12.28207 -12.19132 -12.11571 -11.79057 -11.71837 -11.64749 -11.43222 -11.20700 -11.12407 -10.81421 -10.79147 -10.61209 -9.84806 -9.06305 -8.48686 -6.17174 0.43189 0.54922 1.17538 1.36455 1.44153 1.53741 1.65703 1.79757 2.17308 2.62883 2.82164 3.13464 3.44927 3.49950 3.66986 3.72186 3.83995 3.90019 3.90999 4.09134 4.12354 4.19981 4.28513 4.29673 4.38912 4.41317 4.45184 4.53790 4.57321 4.66761 4.73272 4.98228 4.99729 5.07673 5.12043 5.12961 5.18685 5.21797 5.26985 5.30829 5.43171 5.48834 5.53940 5.65317 5.68442 5.93328 6.00169 6.11061 6.50544 6.73991 6.95733 7.39332 7.73446 8.73893 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.021092 B = 0.001768 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.168537 B =15835.212810 C =16579.172151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.021 4.021 3 Si 1.019 2.981 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.252 1.252 7 C -0.416 4.416 8 H 0.104 0.896 9 O -0.226 6.226 10 C 0.126 3.874 11 C -0.244 4.244 12 C -0.043 4.043 13 C -0.180 4.180 14 C 0.128 3.872 15 O -0.353 6.353 16 C 0.460 3.540 17 O -0.543 6.543 18 C -0.072 4.072 19 H 0.136 0.864 20 C -0.115 4.115 21 C -0.109 4.109 22 C -0.109 4.109 23 C -0.099 4.099 24 H 0.133 0.867 25 C 0.516 3.484 26 N -0.835 5.835 27 O -0.599 6.599 28 C -0.080 4.080 29 C -0.042 4.042 30 C -0.205 4.205 31 H 0.274 0.726 32 H 0.125 0.875 33 H 0.140 0.860 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.056 0.944 42 H 0.420 0.580 43 H 0.405 0.595 44 H 0.051 0.949 45 H 0.057 0.943 46 H 0.149 0.851 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.971 -19.226 17.748 30.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.219 4.219 3 Si 0.838 3.162 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.175 1.175 7 C -0.492 4.492 8 H 0.122 0.878 9 O -0.132 6.132 10 C 0.075 3.925 11 C -0.263 4.263 12 C -0.061 4.061 13 C -0.181 4.181 14 C 0.056 3.944 15 O -0.269 6.269 16 C 0.305 3.695 17 O -0.433 6.433 18 C -0.090 4.090 19 H 0.154 0.846 20 C -0.152 4.152 21 C -0.147 4.147 22 C -0.146 4.146 23 C -0.121 4.121 24 H 0.151 0.849 25 C 0.302 3.698 26 N -0.398 5.398 27 O -0.480 6.480 28 C -0.119 4.119 29 C -0.060 4.060 30 C -0.224 4.224 31 H 0.083 0.917 32 H 0.142 0.858 33 H 0.158 0.842 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.121 0.879 41 H 0.075 0.925 42 H 0.252 0.748 43 H 0.237 0.763 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.167 0.833 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 15.748 -19.447 16.709 30.090 hybrid contribution 0.100 0.607 -0.488 0.785 sum 15.848 -18.840 16.221 29.483 Atomic orbital electron populations 1.70178 1.08025 1.28923 1.48343 1.26599 0.96847 1.02752 0.95670 0.84585 0.77879 0.74513 0.79244 1.18891 1.19578 1.17531 1.21856 0.92632 0.81282 1.53388 0.87848 1.83951 1.36017 1.12643 1.80571 1.19985 0.91591 0.88001 0.92937 1.21240 0.93068 0.99961 1.12063 1.20939 0.99922 0.90696 0.94566 1.19220 0.93498 0.93617 1.11765 1.21636 0.99167 0.94846 0.78789 1.86625 1.65778 1.43528 1.31014 1.24436 0.73838 0.77573 0.93688 1.90665 1.51294 1.51224 1.50103 1.21198 1.02736 0.97418 0.87696 0.84625 1.21602 0.99493 0.96435 0.97695 1.21527 1.01579 0.97331 0.94216 1.21616 0.97928 0.93072 1.02008 1.21349 1.00910 0.92511 0.97285 0.84894 1.20987 0.79062 0.86300 0.83436 1.43728 1.57134 1.30568 1.08418 1.90769 1.58637 1.63119 1.35440 1.21121 0.99572 0.95024 0.96141 1.20889 0.92887 0.97347 0.94829 1.20445 1.00228 0.90236 1.11468 0.91741 0.85763 0.84231 0.90400 0.90037 0.90258 0.92361 0.89157 0.89584 0.87885 0.92501 0.74844 0.76343 0.92976 0.92458 0.83336 0.86196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.29 13.67 21.61 0.30 -54.99 16 2 C -0.02 -1.15 5.49 84.83 0.47 -0.68 16 3 Si 1.02 41.85 29.55 68.60 2.03 43.88 16 4 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 5 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 6 H -0.25 -9.56 7.11 99.48 0.71 -8.86 16 7 C -0.42 -23.69 9.49 67.92 0.64 -23.05 16 8 H 0.10 5.38 5.20 -2.91 -0.02 5.36 16 9 O -0.23 -13.33 9.76 -22.79 -0.22 -13.55 16 10 C 0.13 6.15 6.65 22.58 0.15 6.30 16 11 C -0.24 -10.40 9.17 22.39 0.21 -10.20 16 12 C -0.04 -1.49 9.69 22.25 0.22 -1.27 16 13 C -0.18 -5.78 5.52 -19.83 -0.11 -5.89 16 14 C 0.13 3.50 5.59 71.23 0.40 3.90 16 15 O -0.35 -9.37 10.11 -51.40 -0.52 -9.89 16 16 C 0.46 11.49 7.26 71.24 0.52 12.00 16 17 O -0.54 -17.12 15.73 21.95 0.35 -16.77 16 18 C -0.07 -1.17 2.63 -11.54 -0.03 -1.20 16 19 H 0.14 1.53 8.14 -2.39 -0.02 1.51 16 20 C -0.11 -1.50 5.14 30.59 0.16 -1.34 16 21 C -0.11 -0.67 5.92 30.60 0.18 -0.49 16 22 C -0.11 -0.63 5.10 30.60 0.16 -0.47 16 23 C -0.10 -0.98 2.52 -11.52 -0.03 -1.01 16 24 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 25 C 0.52 7.53 7.43 87.66 0.65 8.18 16 26 N -0.83 -4.30 8.77 -173.53 -1.52 -5.83 16 27 O -0.60 -15.99 16.82 -3.05 -0.05 -16.04 16 28 C -0.08 -1.46 3.07 30.61 0.09 -1.37 16 29 C -0.04 -1.39 9.69 22.25 0.22 -1.17 16 30 C -0.20 -8.51 9.99 22.39 0.22 -8.28 16 31 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 32 H 0.12 5.33 5.64 -2.91 -0.02 5.31 16 33 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 34 H 0.08 2.03 8.08 -2.39 -0.02 2.01 16 35 H 0.08 2.08 8.07 -2.39 -0.02 2.06 16 36 H 0.08 1.15 8.11 -2.38 -0.02 1.13 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.10 -0.04 7.56 -2.39 -0.02 -0.06 16 41 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.42 -0.97 8.25 -92.71 -0.76 -1.73 16 43 H 0.41 1.85 8.93 -92.71 -0.83 1.02 16 44 H 0.05 1.24 8.06 -2.39 -0.02 1.22 16 45 H 0.06 1.29 8.06 -2.39 -0.02 1.27 16 46 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 47 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -83.02 393.37 3.88 -79.13 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -0.58 Total: 20.12 kcal Atomic # 6 Polarization: -30.16 SS G_CDS: 4.11 Total: -26.05 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: -1.23 Total: -60.82 kcal Atomic # 8 Polarization: -55.82 SS G_CDS: -0.45 Total: -56.26 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -83.02 3.88 -79.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787820804.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.427 kcal (2) G-P(sol) polarization free energy of solvation -83.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds