Wall clock time and date at job start Wed Apr 1 2020 05:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48500 * 109.47031 * 270.00367 * 3 2 1 5 5 H 1.48500 * 109.46790 * 30.00128 * 3 2 1 6 6 H 1.48496 * 109.47074 * 150.00006 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.93037 * 179.72269 * 11 10 9 13 13 C 1.38324 * 120.06728 * 0.56797 * 12 11 10 14 14 C 1.38283 * 120.13947 * 359.68120 * 13 12 11 15 15 C 1.50702 * 119.96579 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 270.02222 * 15 14 13 17 17 O 1.20826 * 119.99723 * 359.97438 * 16 15 14 18 18 O 1.34223 * 119.99743 * 179.97438 * 16 15 14 19 19 C 1.45199 * 116.99656 * 179.97438 * 18 16 15 20 20 C 1.53000 * 109.47124 * 180.02562 * 19 18 16 21 21 N 1.46498 * 109.47283 * 65.00165 * 20 19 18 22 22 C 1.45754 * 117.94596 * 269.74047 * 21 20 19 23 23 C 1.53100 * 110.38790 * 160.74418 * 22 21 20 24 24 C 1.53341 * 108.53022 * 51.11117 * 23 22 21 25 25 C 1.53074 * 108.42692 * 292.31492 * 24 23 22 26 26 C 1.33351 * 117.94722 * 90.00066 * 21 20 19 27 27 O 1.21281 * 118.24572 * 2.24897 * 26 21 20 28 28 C 1.38123 * 120.06577 * 0.04594 * 14 13 12 29 29 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 31 31 H 1.07993 * 119.96486 * 180.27241 * 12 11 10 32 32 H 1.08001 * 119.93050 * 179.70445 * 13 12 11 33 33 H 1.08997 * 109.47004 * 30.02720 * 15 14 13 34 34 H 1.08999 * 109.46889 * 150.02243 * 15 14 13 35 35 H 1.09002 * 109.47370 * 300.00168 * 19 18 16 36 36 H 1.09004 * 109.47479 * 60.00306 * 19 18 16 37 37 H 1.09006 * 109.47268 * 185.00349 * 20 19 18 38 38 H 1.09002 * 109.47202 * 304.99806 * 20 19 18 39 39 H 1.08996 * 109.29714 * 281.23794 * 22 21 20 40 40 H 1.08999 * 109.30414 * 40.60649 * 22 21 20 41 41 H 1.08999 * 109.80329 * 291.32478 * 23 22 21 42 42 H 1.08998 * 109.68219 * 170.82635 * 23 22 21 43 43 H 1.08996 * 109.67804 * 172.57656 * 24 23 22 44 44 H 1.09009 * 109.70445 * 52.06019 * 24 23 22 45 45 H 1.09000 * 109.39994 * 288.76869 * 25 24 23 46 46 H 1.08996 * 109.33168 * 168.98552 * 25 24 23 47 47 H 1.08006 * 120.03219 * 180.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1986 13 6 3.5684 -5.8208 0.3192 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2649 -7.8051 -0.9051 17 8 1.6176 -7.1974 -1.8880 18 8 0.6629 -8.9979 -1.0335 19 6 0.4679 -9.4959 -2.3834 20 6 -0.2285 -10.8571 -2.3292 21 7 -1.5760 -10.6947 -1.7776 22 6 -1.7423 -10.8143 -0.3346 23 6 -3.0564 -10.1642 0.1065 24 6 -4.1908 -10.7197 -0.7630 25 6 -3.9930 -10.2172 -2.1953 26 6 -2.5742 -10.4520 -2.6278 27 8 -2.3230 -10.4197 -3.8139 28 6 1.4365 -4.7345 0.2256 29 1 -0.4849 0.8401 -0.0004 30 1 3.9527 -2.4857 -0.0140 31 1 5.2811 -4.5473 0.1885 32 1 4.1534 -6.7248 0.4030 33 1 2.1300 -7.9003 1.0435 34 1 0.5456 -7.0924 0.9735 35 1 -0.1499 -8.7942 -2.9439 36 1 1.4350 -9.6015 -2.8750 37 1 -0.2952 -11.2715 -3.3352 38 1 0.3446 -11.5335 -1.6950 39 1 -1.7475 -11.8688 -0.0587 40 1 -0.9110 -10.3182 0.1663 41 1 -2.9944 -9.0834 -0.0199 42 1 -3.2492 -10.3995 1.1532 43 1 -5.1503 -10.3712 -0.3810 44 1 -4.1644 -11.8093 -0.7495 45 1 -4.2128 -9.1504 -2.2383 46 1 -4.6683 -10.7531 -2.8622 47 1 0.3579 -4.7882 0.2370 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788187457.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:29 Heat of formation + Delta-G solvation = -128.818389 kcal Electronic energy + Delta-G solvation = -29848.387287 eV Core-core repulsion = 25575.828677 eV Total energy + Delta-G solvation = -4272.558610 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.92753 -40.26694 -38.97169 -37.05014 -36.70176 -36.17755 -34.59160 -32.47998 -32.09720 -30.37196 -29.68834 -29.21946 -27.34247 -25.31015 -24.96846 -23.84384 -22.36948 -21.73105 -21.44105 -20.34057 -18.96175 -17.70178 -17.62856 -17.23962 -17.01254 -16.69929 -16.44853 -16.13850 -15.52885 -15.12950 -14.78354 -14.56514 -14.51800 -14.40783 -14.04926 -13.71958 -13.57890 -13.53525 -13.24936 -13.00636 -12.92254 -12.51934 -12.45510 -12.20194 -11.97175 -11.83649 -11.57688 -11.55639 -11.34866 -11.30572 -11.28717 -10.86351 -10.82461 -10.71946 -10.65576 -10.44760 -10.30719 -9.89679 -9.35154 -9.04093 -8.83647 -8.12945 -7.24385 -6.43910 -4.03048 1.94836 2.34413 2.36669 2.38344 2.64412 2.85703 3.14155 3.14236 3.19144 3.97191 4.21283 4.35527 4.39290 4.43354 4.49820 4.63678 4.77612 4.82087 4.95936 5.01612 5.03884 5.08316 5.10429 5.15844 5.26073 5.35251 5.39086 5.44578 5.47824 5.49664 5.51542 5.60857 5.64248 5.71899 5.81445 5.89841 6.08454 6.14597 6.30653 6.43613 6.63794 6.88469 7.05635 7.15514 7.21030 7.34409 7.42249 7.78798 7.87738 7.90201 8.00813 9.01703 9.71602 10.74217 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013760 B = 0.002191 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.373949 B =12773.905653 C =13843.234735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.178 6.178 10 C 0.154 3.846 11 C -0.227 4.227 12 C -0.075 4.075 13 C -0.195 4.195 14 C -0.045 4.045 15 C -0.063 4.063 16 C 0.458 3.542 17 O -0.487 6.487 18 O -0.363 6.363 19 C 0.051 3.949 20 C 0.111 3.889 21 N -0.599 5.599 22 C 0.111 3.889 23 C -0.138 4.138 24 C -0.124 4.124 25 C -0.135 4.135 26 C 0.516 3.484 27 O -0.556 6.556 28 C -0.172 4.172 29 H 0.270 0.730 30 H 0.127 0.873 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.101 0.899 46 H 0.099 0.901 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.757 -24.183 2.976 24.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.082 6.082 10 C 0.101 3.899 11 C -0.246 4.246 12 C -0.093 4.093 13 C -0.214 4.214 14 C -0.045 4.045 15 C -0.100 4.100 16 C 0.299 3.701 17 O -0.372 6.372 18 O -0.281 6.281 19 C -0.024 4.024 20 C -0.012 4.012 21 N -0.332 5.332 22 C -0.011 4.011 23 C -0.176 4.176 24 C -0.161 4.161 25 C -0.175 4.175 26 C 0.304 3.696 27 O -0.435 6.435 28 C -0.192 4.192 29 H 0.080 0.920 30 H 0.145 0.855 31 H 0.127 0.873 32 H 0.122 0.878 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.127 0.873 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.119 0.881 46 H 0.118 0.882 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.995 -23.769 2.018 24.187 hybrid contribution 0.581 0.942 -0.156 1.118 sum -3.414 -22.827 1.862 23.156 Atomic orbital electron populations 1.70043 1.05952 1.27630 1.46192 1.25286 0.95847 0.98810 0.96572 0.85711 0.78900 0.80085 0.78727 1.19885 1.20251 1.19198 1.21322 0.91794 0.80806 1.52867 0.89082 1.83976 1.34250 1.11384 1.78562 1.19263 0.90257 0.87973 0.92456 1.21213 0.93832 0.99080 1.10490 1.20690 0.98477 0.92260 0.97849 1.20364 0.93170 0.97057 1.10798 1.18663 0.93353 0.91526 1.00955 1.20250 1.03439 0.95216 0.91092 1.23849 0.74457 0.78750 0.93005 1.90736 1.46426 1.59590 1.40468 1.86451 1.72620 1.36319 1.32681 1.23463 1.01238 0.96056 0.81627 1.21637 0.82258 0.95212 1.02068 1.47305 1.07596 1.70607 1.07681 1.21552 0.99348 1.00744 0.79467 1.21929 0.93709 1.01485 1.00479 1.21670 0.99469 1.01131 0.93878 1.21668 0.93112 1.04430 0.98277 1.20250 0.87630 0.75821 0.85852 1.90727 1.84260 1.51579 1.16949 1.19952 0.99102 0.90000 1.10118 0.92045 0.85495 0.87316 0.87763 0.87249 0.87219 0.90776 0.90207 0.87315 0.89245 0.91764 0.89230 0.90576 0.89573 0.90443 0.91195 0.88077 0.88244 0.86725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.55 13.67 55.48 0.76 -24.79 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 20.73 29.55 -169.99 -5.02 15.71 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 7 C -0.39 -11.10 9.49 30.89 0.29 -10.80 16 8 H 0.09 2.39 5.21 -52.49 -0.27 2.11 16 9 O -0.18 -5.18 9.76 0.05 0.00 -5.18 16 10 C 0.15 3.81 6.65 -39.11 -0.26 3.55 16 11 C -0.23 -5.06 9.17 -39.39 -0.36 -5.42 16 12 C -0.07 -1.40 10.04 -39.61 -0.40 -1.80 16 13 C -0.19 -3.42 9.70 -39.53 -0.38 -3.81 16 14 C -0.04 -0.80 4.37 -104.65 -0.46 -1.25 16 15 C -0.06 -0.81 5.94 -29.03 -0.17 -0.98 16 16 C 0.46 6.72 7.95 36.01 0.29 7.00 16 17 O -0.49 -9.33 15.78 -18.75 -0.30 -9.62 16 18 O -0.36 -4.26 8.73 -39.24 -0.34 -4.60 16 19 C 0.05 0.58 5.80 37.16 0.22 0.79 16 20 C 0.11 0.97 5.66 -4.04 -0.02 0.94 16 21 N -0.60 -5.37 2.78 -174.85 -0.49 -5.86 16 22 C 0.11 0.70 6.20 -4.39 -0.03 0.67 16 23 C -0.14 -0.76 6.03 -26.50 -0.16 -0.92 16 24 C -0.12 -0.65 6.03 -26.52 -0.16 -0.81 16 25 C -0.14 -1.04 6.03 -28.10 -0.17 -1.20 16 26 C 0.52 5.62 7.46 -11.87 -0.09 5.53 16 27 O -0.56 -8.26 16.18 5.56 0.09 -8.17 16 28 C -0.17 -3.71 9.65 -39.40 -0.38 -4.09 16 29 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.13 2.81 5.64 -52.49 -0.30 2.52 16 31 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 32 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.11 1.07 8.08 -51.93 -0.42 0.65 16 34 H 0.11 1.20 8.08 -51.93 -0.42 0.78 16 35 H 0.07 1.04 8.13 -51.93 -0.42 0.61 16 36 H 0.08 0.86 8.13 -51.93 -0.42 0.43 16 37 H 0.11 1.00 7.13 -51.93 -0.37 0.63 16 38 H 0.09 0.56 8.01 -51.93 -0.42 0.14 16 39 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.09 0.59 6.75 -51.93 -0.35 0.24 16 41 H 0.08 0.52 8.12 -51.93 -0.42 0.10 16 42 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.07 0.33 8.13 -51.92 -0.42 -0.09 16 45 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.11 2.39 8.06 -52.48 -0.42 1.97 16 LS Contribution 394.05 15.07 5.94 5.94 Total: -1.00 -36.28 394.05 -8.45 -44.73 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.75 Total: 3.46 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -2.34 Total: -11.62 kcal Atomic # 7 Polarization: -30.93 SS G_CDS: 0.27 Total: -30.65 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.55 Total: -27.57 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.28 -8.45 -44.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788187457.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.086 kcal (2) G-P(sol) polarization free energy of solvation -36.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds