Wall clock time and date at job start Wed Apr 1 2020 05:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48500 * 109.47031 * 270.00367 * 3 2 1 5 5 H 1.48500 * 109.46790 * 30.00128 * 3 2 1 6 6 H 1.48496 * 109.47074 * 150.00006 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.93037 * 179.72269 * 11 10 9 13 13 C 1.38324 * 120.06728 * 0.56797 * 12 11 10 14 14 C 1.38283 * 120.13947 * 359.68120 * 13 12 11 15 15 C 1.50702 * 119.96579 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 270.02222 * 15 14 13 17 17 O 1.20826 * 119.99723 * 359.97438 * 16 15 14 18 18 O 1.34223 * 119.99743 * 179.97438 * 16 15 14 19 19 C 1.45199 * 116.99656 * 179.97438 * 18 16 15 20 20 C 1.53000 * 109.47124 * 180.02562 * 19 18 16 21 21 N 1.46498 * 109.47283 * 65.00165 * 20 19 18 22 22 C 1.45754 * 117.94596 * 269.74047 * 21 20 19 23 23 C 1.53100 * 110.38790 * 160.74418 * 22 21 20 24 24 C 1.53341 * 108.53022 * 51.11117 * 23 22 21 25 25 C 1.53074 * 108.42692 * 292.31492 * 24 23 22 26 26 C 1.33351 * 117.94722 * 90.00066 * 21 20 19 27 27 O 1.21281 * 118.24572 * 2.24897 * 26 21 20 28 28 C 1.38123 * 120.06577 * 0.04594 * 14 13 12 29 29 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 31 31 H 1.07993 * 119.96486 * 180.27241 * 12 11 10 32 32 H 1.08001 * 119.93050 * 179.70445 * 13 12 11 33 33 H 1.08997 * 109.47004 * 30.02720 * 15 14 13 34 34 H 1.08999 * 109.46889 * 150.02243 * 15 14 13 35 35 H 1.09002 * 109.47370 * 300.00168 * 19 18 16 36 36 H 1.09004 * 109.47479 * 60.00306 * 19 18 16 37 37 H 1.09006 * 109.47268 * 185.00349 * 20 19 18 38 38 H 1.09002 * 109.47202 * 304.99806 * 20 19 18 39 39 H 1.08996 * 109.29714 * 281.23794 * 22 21 20 40 40 H 1.08999 * 109.30414 * 40.60649 * 22 21 20 41 41 H 1.08999 * 109.80329 * 291.32478 * 23 22 21 42 42 H 1.08998 * 109.68219 * 170.82635 * 23 22 21 43 43 H 1.08996 * 109.67804 * 172.57656 * 24 23 22 44 44 H 1.09009 * 109.70445 * 52.06019 * 24 23 22 45 45 H 1.09000 * 109.39994 * 288.76869 * 25 24 23 46 46 H 1.08996 * 109.33168 * 168.98552 * 25 24 23 47 47 H 1.08006 * 120.03219 * 180.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1986 13 6 3.5684 -5.8208 0.3192 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2649 -7.8051 -0.9051 17 8 1.6176 -7.1974 -1.8880 18 8 0.6629 -8.9979 -1.0335 19 6 0.4679 -9.4959 -2.3834 20 6 -0.2285 -10.8571 -2.3292 21 7 -1.5760 -10.6947 -1.7776 22 6 -1.7423 -10.8143 -0.3346 23 6 -3.0564 -10.1642 0.1065 24 6 -4.1908 -10.7197 -0.7630 25 6 -3.9930 -10.2172 -2.1953 26 6 -2.5742 -10.4520 -2.6278 27 8 -2.3230 -10.4197 -3.8139 28 6 1.4365 -4.7345 0.2256 29 1 -0.4849 0.8401 -0.0004 30 1 3.9527 -2.4857 -0.0140 31 1 5.2811 -4.5473 0.1885 32 1 4.1534 -6.7248 0.4030 33 1 2.1300 -7.9003 1.0435 34 1 0.5456 -7.0924 0.9735 35 1 -0.1499 -8.7942 -2.9439 36 1 1.4350 -9.6015 -2.8750 37 1 -0.2952 -11.2715 -3.3352 38 1 0.3446 -11.5335 -1.6950 39 1 -1.7475 -11.8688 -0.0587 40 1 -0.9110 -10.3182 0.1663 41 1 -2.9944 -9.0834 -0.0199 42 1 -3.2492 -10.3995 1.1532 43 1 -5.1503 -10.3712 -0.3810 44 1 -4.1644 -11.8093 -0.7495 45 1 -4.2128 -9.1504 -2.2383 46 1 -4.6683 -10.7531 -2.8622 47 1 0.3579 -4.7882 0.2370 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788187457.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:28 Heat of formation + Delta-G solvation = -151.493194 kcal Electronic energy + Delta-G solvation = -29849.370541 eV Core-core repulsion = 25575.828677 eV Total energy + Delta-G solvation = -4273.541863 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.84015 -41.33973 -40.65717 -38.51998 -37.71872 -37.31959 -35.29023 -34.36861 -33.62394 -31.19707 -30.87191 -30.37499 -28.71419 -27.29425 -25.62554 -24.63409 -23.50968 -23.17634 -22.52576 -21.74907 -19.61375 -19.52315 -18.81869 -18.76739 -18.06474 -17.64888 -17.30717 -17.13471 -16.75862 -16.42953 -16.31182 -16.11921 -15.53073 -15.43320 -15.14741 -15.12060 -14.69906 -14.45226 -14.29809 -14.21247 -14.07568 -13.88216 -13.64027 -13.53556 -13.03401 -12.95210 -12.87032 -12.58869 -12.50918 -12.43826 -12.25680 -12.15541 -12.11873 -11.83627 -11.80166 -11.77154 -11.56633 -11.22957 -10.82091 -10.69465 -9.79586 -9.70219 -9.01611 -8.48443 -6.17122 0.41058 0.72191 1.20735 1.33376 1.42409 1.51160 1.51432 1.70559 2.01545 2.16557 2.82255 3.14794 3.38897 3.58054 3.68262 3.80739 3.85649 3.92923 3.94262 3.97824 4.02239 4.07677 4.20213 4.28742 4.38016 4.48447 4.52824 4.56972 4.60559 4.64148 4.67133 4.71286 4.74832 4.89467 4.95385 5.01743 5.09726 5.10807 5.17999 5.25098 5.35125 5.38297 5.45089 5.60845 5.68492 5.71429 6.00886 6.20050 6.42848 6.74963 6.96088 7.08427 7.76966 8.75024 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013760 B = 0.002191 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.373949 B =12773.905653 C =13843.234735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.020 2.980 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.251 1.251 7 C -0.414 4.414 8 H 0.101 0.899 9 O -0.234 6.234 10 C 0.110 3.890 11 C -0.243 4.243 12 C -0.074 4.074 13 C -0.175 4.175 14 C -0.038 4.038 15 C -0.058 4.058 16 C 0.463 3.537 17 O -0.541 6.541 18 O -0.342 6.342 19 C 0.053 3.947 20 C 0.115 3.885 21 N -0.597 5.597 22 C 0.105 3.895 23 C -0.138 4.138 24 C -0.116 4.116 25 C -0.135 4.135 26 C 0.505 3.495 27 O -0.608 6.608 28 C -0.190 4.190 29 H 0.273 0.727 30 H 0.118 0.882 31 H 0.147 0.853 32 H 0.153 0.847 33 H 0.160 0.840 34 H 0.133 0.867 35 H 0.038 0.962 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.125 0.875 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.057 0.943 42 H 0.110 0.890 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.096 0.904 46 H 0.104 0.896 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.881 -27.272 5.148 27.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.839 3.161 4 H -0.191 1.191 5 H -0.194 1.194 6 H -0.175 1.175 7 C -0.490 4.490 8 H 0.118 0.882 9 O -0.141 6.141 10 C 0.060 3.940 11 C -0.262 4.262 12 C -0.092 4.092 13 C -0.194 4.194 14 C -0.038 4.038 15 C -0.095 4.095 16 C 0.308 3.692 17 O -0.430 6.430 18 O -0.259 6.259 19 C -0.022 4.022 20 C -0.008 4.008 21 N -0.328 5.328 22 C -0.016 4.016 23 C -0.175 4.175 24 C -0.154 4.154 25 C -0.175 4.175 26 C 0.295 3.705 27 O -0.490 6.490 28 C -0.209 4.209 29 H 0.082 0.918 30 H 0.136 0.864 31 H 0.165 0.835 32 H 0.170 0.830 33 H 0.178 0.822 34 H 0.151 0.849 35 H 0.056 0.944 36 H 0.104 0.896 37 H 0.119 0.881 38 H 0.143 0.857 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.076 0.924 42 H 0.129 0.871 43 H 0.110 0.890 44 H 0.100 0.900 45 H 0.114 0.886 46 H 0.122 0.878 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.096 -26.940 4.251 27.353 hybrid contribution 0.089 1.529 -0.814 1.735 sum -2.007 -25.410 3.437 25.720 Atomic orbital electron populations 1.70191 1.08040 1.28784 1.48973 1.26613 0.96885 1.02757 0.95855 0.84578 0.77888 0.74499 0.79179 1.19051 1.19359 1.17482 1.21826 0.92513 0.81456 1.53255 0.88165 1.83936 1.35939 1.12584 1.81659 1.19877 0.91703 0.87940 0.94447 1.21346 0.93116 1.00404 1.11322 1.21161 1.00362 0.91418 0.96223 1.21026 0.93321 0.98280 1.06747 1.19164 0.93921 0.92510 0.98228 1.20394 1.05290 0.93136 0.90689 1.24165 0.73291 0.78835 0.92933 1.90742 1.48935 1.61024 1.42265 1.86452 1.71650 1.34947 1.32803 1.23525 1.01238 0.96467 0.80977 1.21682 0.82424 0.93978 1.02744 1.47479 1.07216 1.69267 1.08863 1.21822 0.99841 1.02502 0.77431 1.21957 0.93411 1.00279 1.01897 1.21663 1.00151 1.01760 0.91809 1.21710 0.91169 1.04305 1.00317 1.20871 0.89142 0.75085 0.85413 1.90697 1.85185 1.54019 1.19131 1.20238 0.99354 0.90519 1.10839 0.91840 0.86393 0.83481 0.82967 0.82227 0.84901 0.94366 0.89591 0.88092 0.85659 0.89158 0.88999 0.92406 0.87125 0.89003 0.89996 0.88611 0.87812 0.87464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.77 13.67 21.61 0.30 -57.48 16 2 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 3 Si 1.02 43.80 29.55 68.60 2.03 45.83 16 4 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.25 -9.96 7.11 99.48 0.71 -9.26 16 7 C -0.41 -24.85 9.49 67.92 0.64 -24.21 16 8 H 0.10 5.52 5.21 -2.91 -0.02 5.51 16 9 O -0.23 -14.61 9.76 -22.74 -0.22 -14.83 16 10 C 0.11 5.72 6.65 22.58 0.15 5.87 16 11 C -0.24 -10.96 9.17 22.39 0.21 -10.76 16 12 C -0.07 -2.58 10.04 22.25 0.22 -2.36 16 13 C -0.18 -5.43 9.70 22.30 0.22 -5.21 16 14 C -0.04 -1.26 4.37 -19.88 -0.09 -1.35 16 15 C -0.06 -1.28 5.94 29.10 0.17 -1.10 16 16 C 0.46 12.50 7.95 71.24 0.57 13.07 16 17 O -0.54 -20.37 15.78 21.96 0.35 -20.02 16 18 O -0.34 -7.15 8.73 -51.35 -0.45 -7.60 16 19 C 0.05 1.16 5.80 71.98 0.42 1.57 16 20 C 0.11 1.81 5.66 86.38 0.49 2.30 16 21 N -0.60 -9.83 2.78 -826.29 -2.30 -12.13 16 22 C 0.11 0.99 6.20 86.55 0.54 1.53 16 23 C -0.14 -1.15 6.03 30.74 0.19 -0.96 16 24 C -0.12 -0.96 6.03 30.73 0.19 -0.77 16 25 C -0.14 -2.02 6.03 29.71 0.18 -1.84 16 26 C 0.50 11.02 7.46 87.71 0.65 11.67 16 27 O -0.61 -18.88 16.18 -3.03 -0.05 -18.93 16 28 C -0.19 -8.37 9.65 22.39 0.22 -8.15 16 29 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 30 H 0.12 5.40 5.64 -2.91 -0.02 5.39 16 31 H 0.15 3.99 8.06 -2.91 -0.02 3.97 16 32 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 33 H 0.16 2.00 8.08 -2.39 -0.02 1.98 16 34 H 0.13 2.40 8.08 -2.39 -0.02 2.38 16 35 H 0.04 1.12 8.13 -2.39 -0.02 1.10 16 36 H 0.09 1.78 8.13 -2.38 -0.02 1.76 16 37 H 0.10 1.82 7.13 -2.38 -0.02 1.80 16 38 H 0.13 1.10 8.01 -2.39 -0.02 1.08 16 39 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.09 0.85 6.75 -2.39 -0.02 0.84 16 41 H 0.06 0.71 8.12 -2.39 -0.02 0.69 16 42 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.08 0.52 8.13 -2.38 -0.02 0.50 16 45 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -88.55 394.05 6.05 -82.49 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 0.98 Total: 24.29 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: 5.42 Total: -21.62 kcal Atomic # 7 Polarization: -67.60 SS G_CDS: -2.01 Total: -69.61 kcal Atomic # 8 Polarization: -61.01 SS G_CDS: -0.37 Total: -61.38 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -88.55 6.05 -82.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788187457.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.000 kcal (2) G-P(sol) polarization free energy of solvation -88.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds